BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G62550.1
Length=798
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486755 jgi|Araly1|486755|fgenesh2_kg.5__2747__AT3G62550.1 1133 0.0
> Ahg486755 jgi|Araly1|486755|fgenesh2_kg.5__2747__AT3G62550.1
Length=786
Score = 1133 bits (613), Expect = 0.0
Identities = 739/797 (93%), Gaps = 20/797 (3%)
Strand=Plus/Plus
Query 1 GTAAAAATTACACAAAG-GATAGTGTCTGCAAATATCTAAATGAAAACACTTAATTCCAA 59
||||||||||| ||| |||| ||||| ||||||||||||| ||||||||||||||| |
Sbjct 1 GTAAAAATTAC-TTAAGAGATAATGTCTACAAATATCTAAATAAAAACACTTAATTCC-A 58
Query 60 AAT-GAGAAATCAAGTGGGTTTTGCCTAGCTAATTGTATAAATAGTAACACAATCATAAT 118
||| | |||||||||||||||||||||||||| |||||||||||| ||||||||| ||||
Sbjct 59 AATAGGGAAATCAAGTGGGTTTTGCCTAGCTAGTTGTATAAATAGAAACACAATCGTAAT 118
Query 119 CTCTTCTTCCATCAG-GTCTTCTTCATAATATATTTCTTCTCTAATAATTGAAAGCAAAA 177
||||||||||||| | | ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 119 CTCTTCTTCCATC-GAGCCTTCTTCATAAGATATTTCTTCTCTAATAATTGAAAGCAAAA 177
Query 178 GAAAACAGtttttttttttAGAAAGGTAAAGAAATGGAGGAAACAAAGGAGAGAAAGATA 237
|||| ||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 GAAATCAG-TATTTTTTTTAGAAAGGTAAAGAAATGGAGGAAACAAAGGAGAGAAAGATA 236
Query 238 GTAGTAGCAGTAGACGAAAGCGAAGAGAGCATGGAAGCTCTGTCATGGAGTCTTGACAAT 297
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 237 GTAGTAGCAGTGGACGAAAGCGAAGAGAGCATGGAAGCTCTTTCATGGAGTCTTGACAAT 296
Query 298 CTTTTTCCATATGGTTCCAATAATACACTCATCCTCCTCTACGTCAAGCCCCCTCTTCCC 357
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 297 CTTTTTCCATATGGTTCCAATAATACACTCATCCTCCTCTACGTAAAGCCCCCTCTTCCC 356
Query 358 GTTTACTCTTCCCTCGATGCCGCAGGGTTTATAGTGACAGGAGACCCGGTTGCAGCTTTG 417
|||||||||||||| || |||||||||||||||||||| |||||||||||||||||||||
Sbjct 357 GTTTACTCTTCCCTTGACGCCGCAGGGTTTATAGTGACCGGAGACCCGGTTGCAGCTTTG 416
Query 418 AAGAAGTATGAATACGAGCTCGTGGAATCGGTCATGGCTCGGTCTCGAACCGTGTACCAA 477
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 417 AAGAAGTATGAATACGAGCTGGTGGAATCGGTCATGGCTCGATCTCGAACCGTGTACCAA 476
Query 478 GATTATGAGTCTGATATTAATATAGAGAGACGAGTTGGAAGAGGAGATGCTAAGGAAGTT 537
|||||||| || |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 477 GATTATGAATCCGATATTAATATAGAAAGACGAGTTGGAAGAGGAGATGCTAAGGAAGTT 536
Query 538 ATATGCAACGCAGTTCAGAAACTTAGAGTTGATATGTTAGTAATGGGCACTCATGACTAT 597
|||||||| |||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct 537 ATATGCAAGGCAGTTGAGAAACTTAGAGCTGATATGTTAGTAATGGGCACTCATGACTAT 596
Query 598 GGCTTCTTCAAAAGGGCTTTGCTAGGGAGTGTGAGCGAGTATTGCGCCAAACGAGTCAAG 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 GGCTTCTTCAAAAGGGCTTTGCTAGGGAGTGTGAGCGAGTATTGCGCCAAACGAGTCAAG 656
Query 658 TGTCCTGTGGTTATCGTCAAGAAGCAAGCTCAAGATAATTAAGCTCATA--TGAT-TGCA 714
||||||||| |||| |||||||||||| || ||||||||||| | ||| | | || |
Sbjct 657 TGTCCTGTGATTATTGTCAAGAAGCAACCTGAAGATAATTAAA-T-ATAACTCTTGTG-A 713
Query 715 TTGTGTATATGTTTCGAAAGAACTGGTGTAACACTTGAATCAATCTTCGTAT---GCGAT 771
||||||||||||||||||||||||| ||||||| || || | ||||||||| || ||
Sbjct 714 TTGTGTATATGTTTCGAAAGAACTGATGTAACATTT-AA--A-TCTTCGTATATTGCAAT 769
Query 772 AATAAAATACATAACGG 788
||||||||||| |||||
Sbjct 770 AATAAAATACACAACGG 786
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29469014841
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5