BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G62560.1 Length=860 Score E Sequences producing significant alignments: (Bits) Value Ahg939342 jgi|Araly1|939342|scaffold_503533.1 1035 0.0 > Ahg939342 jgi|Araly1|939342|scaffold_503533.1 Length=623 Score = 1035 bits (560), Expect = 0.0 Identities = 603/623 (97%), Gaps = 5/623 (1%) Strand=Plus/Plus Query 98 aga-agaagaagaagCGATGTTCCTGGTGGATTGGTTCTATGGAGTTCTGGCAACTCTGG 156 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 5 AGAGAGAAGAAGAAGCGATGTTCCTGGTGGATTGGTTCTATGGAGTTCTGGCAACTCTCG 64 Query 157 GACTATGGCAGAAAGAAGCGAAGATTCTGTTTCTAGGTCTCGACAACGCCGGCAAAACCA 216 || | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 65 GATTGTGGCAGAAAGAAGCGAAGATTCTGTTTCTAGGTCTCGACAACGCCGGCAAAACCA 124 Query 217 CCTTGCTTCACATGTTAAAGGACGAGAGACTGGTCCAGCATCAGCCGACACAGCATCCGA 276 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 125 CCTTGCTTCACATGTTAAAGGACGAGAGACTGGTCCAGCATCAGCCGACACAGCATCCGA 184 Query 277 CATCGGAAGAGCTTAGTATCGGCAAAATCAAGTTCAAAGCCTTCGATTTGGGAGGTCATC 336 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 185 CATCGGAAGAGCTAAGTATCGGCAAAATCAAGTTCAAAGCCTTCGATTTGGGAGGTCATC 244 Query 337 AGATTGCTCGTAGAGTCTGGAAGGACTATTACGCTAAGGTTGATGCAGTGGTATACCTAG 396 ||||||| || ||||||||||||||||| || |||||||||||||||||||||||||||| Sbjct 245 AGATTGCACGCAGAGTCTGGAAGGACTACTATGCTAAGGTTGATGCAGTGGTATACCTAG 304 Query 397 TTGATGCATATGACAAAGAGAGGTTTGCAGAATCAAAGAAAGAGCTTGACGCTCTTCTCT 456 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 305 TGGATGCATATGACAAAGAGAGGTTTGCAGAATCAAAGAAAGAGCTTGACGCTCTTCTCT 364 Query 457 CTGATGAATCCCTAGCAAATGTCCCTTTCCTCATCCTTGGAAACAAAATCGACATTCCGT 516 |||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| | Sbjct 365 CTGATGAATCCCTAGCAAATGTCCCTTTCCTCGTTCTTGGAAACAAAATCGACATTCCTT 424 Query 517 ACGCTGCATCAGAAGACGAGCTGCGTTATCATCTAGGCCTCACCAGTTTCACCACTGGGA 576 |||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| Sbjct 425 ACGCTGCATCAGAAGACGAGCTACGTTATCATCTAGGCCTCACCAATTTCACCACTGGGA 484 Query 577 AAGGTAAAGTGAATCTAGCAGGAACAAATGTTCGTCCTCTTGAGGTGTTCATGTGCAGCA 636 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 485 AAGGTAAAGTGAATCTAGCAGGAACAAATGTTCGTCCCCTTGAGGTGTTCATGTGCAGCA 544 Query 637 TTGTCAGAAAGATGGGTTACGGCGAAGGATTTAAATGGGTTTCTCAATATATCGACTAGA 696 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 545 TTGTCAGAAAGATGGGTTACGGCGAAGGATTTAAATGGGTTTCTCAATATATCGACTAGA 604 Query 697 TCAATCATATTTAAGTCTTATCT 719 ||||| ||| ||||||||||| Sbjct 605 TCAAT--TAT--AAGTCTTATCT 623 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 31832635695 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5