BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G62560.1

Length=860
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg939342 jgi|Araly1|939342|scaffold_503533.1                       1035    0.0  


> Ahg939342 jgi|Araly1|939342|scaffold_503533.1
Length=623

 Score = 1035 bits (560),  Expect = 0.0
 Identities = 603/623 (97%), Gaps = 5/623 (1%)
 Strand=Plus/Plus

Query  98   aga-agaagaagaagCGATGTTCCTGGTGGATTGGTTCTATGGAGTTCTGGCAACTCTGG  156
            ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct  5    AGAGAGAAGAAGAAGCGATGTTCCTGGTGGATTGGTTCTATGGAGTTCTGGCAACTCTCG  64

Query  157  GACTATGGCAGAAAGAAGCGAAGATTCTGTTTCTAGGTCTCGACAACGCCGGCAAAACCA  216
            || | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  65   GATTGTGGCAGAAAGAAGCGAAGATTCTGTTTCTAGGTCTCGACAACGCCGGCAAAACCA  124

Query  217  CCTTGCTTCACATGTTAAAGGACGAGAGACTGGTCCAGCATCAGCCGACACAGCATCCGA  276
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  125  CCTTGCTTCACATGTTAAAGGACGAGAGACTGGTCCAGCATCAGCCGACACAGCATCCGA  184

Query  277  CATCGGAAGAGCTTAGTATCGGCAAAATCAAGTTCAAAGCCTTCGATTTGGGAGGTCATC  336
            ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  185  CATCGGAAGAGCTAAGTATCGGCAAAATCAAGTTCAAAGCCTTCGATTTGGGAGGTCATC  244

Query  337  AGATTGCTCGTAGAGTCTGGAAGGACTATTACGCTAAGGTTGATGCAGTGGTATACCTAG  396
            ||||||| || ||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct  245  AGATTGCACGCAGAGTCTGGAAGGACTACTATGCTAAGGTTGATGCAGTGGTATACCTAG  304

Query  397  TTGATGCATATGACAAAGAGAGGTTTGCAGAATCAAAGAAAGAGCTTGACGCTCTTCTCT  456
            | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  305  TGGATGCATATGACAAAGAGAGGTTTGCAGAATCAAAGAAAGAGCTTGACGCTCTTCTCT  364

Query  457  CTGATGAATCCCTAGCAAATGTCCCTTTCCTCATCCTTGGAAACAAAATCGACATTCCGT  516
            |||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |
Sbjct  365  CTGATGAATCCCTAGCAAATGTCCCTTTCCTCGTTCTTGGAAACAAAATCGACATTCCTT  424

Query  517  ACGCTGCATCAGAAGACGAGCTGCGTTATCATCTAGGCCTCACCAGTTTCACCACTGGGA  576
            |||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||
Sbjct  425  ACGCTGCATCAGAAGACGAGCTACGTTATCATCTAGGCCTCACCAATTTCACCACTGGGA  484

Query  577  AAGGTAAAGTGAATCTAGCAGGAACAAATGTTCGTCCTCTTGAGGTGTTCATGTGCAGCA  636
            ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct  485  AAGGTAAAGTGAATCTAGCAGGAACAAATGTTCGTCCCCTTGAGGTGTTCATGTGCAGCA  544

Query  637  TTGTCAGAAAGATGGGTTACGGCGAAGGATTTAAATGGGTTTCTCAATATATCGACTAGA  696
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  545  TTGTCAGAAAGATGGGTTACGGCGAAGGATTTAAATGGGTTTCTCAATATATCGACTAGA  604

Query  697  TCAATCATATTTAAGTCTTATCT  719
            |||||  |||  |||||||||||
Sbjct  605  TCAAT--TAT--AAGTCTTATCT  623



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 31832635695


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5