BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G62560.1
Length=860
Score E
Sequences producing significant alignments: (Bits) Value
Ahg939342 jgi|Araly1|939342|scaffold_503533.1 1035 0.0
> Ahg939342 jgi|Araly1|939342|scaffold_503533.1
Length=623
Score = 1035 bits (560), Expect = 0.0
Identities = 603/623 (97%), Gaps = 5/623 (1%)
Strand=Plus/Plus
Query 98 aga-agaagaagaagCGATGTTCCTGGTGGATTGGTTCTATGGAGTTCTGGCAACTCTGG 156
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 5 AGAGAGAAGAAGAAGCGATGTTCCTGGTGGATTGGTTCTATGGAGTTCTGGCAACTCTCG 64
Query 157 GACTATGGCAGAAAGAAGCGAAGATTCTGTTTCTAGGTCTCGACAACGCCGGCAAAACCA 216
|| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 65 GATTGTGGCAGAAAGAAGCGAAGATTCTGTTTCTAGGTCTCGACAACGCCGGCAAAACCA 124
Query 217 CCTTGCTTCACATGTTAAAGGACGAGAGACTGGTCCAGCATCAGCCGACACAGCATCCGA 276
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 125 CCTTGCTTCACATGTTAAAGGACGAGAGACTGGTCCAGCATCAGCCGACACAGCATCCGA 184
Query 277 CATCGGAAGAGCTTAGTATCGGCAAAATCAAGTTCAAAGCCTTCGATTTGGGAGGTCATC 336
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 185 CATCGGAAGAGCTAAGTATCGGCAAAATCAAGTTCAAAGCCTTCGATTTGGGAGGTCATC 244
Query 337 AGATTGCTCGTAGAGTCTGGAAGGACTATTACGCTAAGGTTGATGCAGTGGTATACCTAG 396
||||||| || ||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 245 AGATTGCACGCAGAGTCTGGAAGGACTACTATGCTAAGGTTGATGCAGTGGTATACCTAG 304
Query 397 TTGATGCATATGACAAAGAGAGGTTTGCAGAATCAAAGAAAGAGCTTGACGCTCTTCTCT 456
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 305 TGGATGCATATGACAAAGAGAGGTTTGCAGAATCAAAGAAAGAGCTTGACGCTCTTCTCT 364
Query 457 CTGATGAATCCCTAGCAAATGTCCCTTTCCTCATCCTTGGAAACAAAATCGACATTCCGT 516
|||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |
Sbjct 365 CTGATGAATCCCTAGCAAATGTCCCTTTCCTCGTTCTTGGAAACAAAATCGACATTCCTT 424
Query 517 ACGCTGCATCAGAAGACGAGCTGCGTTATCATCTAGGCCTCACCAGTTTCACCACTGGGA 576
|||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||
Sbjct 425 ACGCTGCATCAGAAGACGAGCTACGTTATCATCTAGGCCTCACCAATTTCACCACTGGGA 484
Query 577 AAGGTAAAGTGAATCTAGCAGGAACAAATGTTCGTCCTCTTGAGGTGTTCATGTGCAGCA 636
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 485 AAGGTAAAGTGAATCTAGCAGGAACAAATGTTCGTCCCCTTGAGGTGTTCATGTGCAGCA 544
Query 637 TTGTCAGAAAGATGGGTTACGGCGAAGGATTTAAATGGGTTTCTCAATATATCGACTAGA 696
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 545 TTGTCAGAAAGATGGGTTACGGCGAAGGATTTAAATGGGTTTCTCAATATATCGACTAGA 604
Query 697 TCAATCATATTTAAGTCTTATCT 719
||||| ||| |||||||||||
Sbjct 605 TCAAT--TAT--AAGTCTTATCT 623
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31832635695
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5