BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G62570.1
Length=1836
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486757 jgi|Araly1|486757|fgenesh2_kg.5__2749__AT3G62570.1 2558 0.0
> Ahg486757 jgi|Araly1|486757|fgenesh2_kg.5__2749__AT3G62570.1
Length=1748
Score = 2558 bits (1385), Expect = 0.0
Identities = 1632/1753 (93%), Gaps = 10/1753 (1%)
Strand=Plus/Plus
Query 72 tctctctctTTTCTCAAATCTTGGAGGAGAAGAAGCAAAGAATTAGACTACTCTG---CA 128
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1 TCTCTCTCTTTTCTCAAATCTTGGAGGAGAAGAAGCAAAGAATTAGACTACTCTGCAACA 60
Query 129 ACAATGGCTATTTATTCTGTCCATAACGGCGACAAGAAACATTGGTGGTTCACTCACAAG 188
|||||||| ||||| |||||| ||||||||||||||| |||||||||||||||||||||
Sbjct 61 ACAATGGCGGTTTATCCTGTCCTTAACGGCGACAAGAAGCATTGGTGGTTCACTCACAAG 120
Query 189 AAGATTGTTGATAAGTACATTAAGGACGCAAGATCTTTAATGGAGAGTGAGGAGCAAAAC 248
||||||||||| ||||||||| |||||||||| ||||||||| ||||||||||||||||
Sbjct 121 AAGATTGTTGACAAGTACATTCAGGACGCAAGGTCTTTAATGTCGAGTGAGGAGCAAAAC 180
Query 249 GACGTTGCTTCAGCCATTCATTTACTAGACGCGGCTTTATCAATATCCCCGCGTTCGGAA 308
|||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||
Sbjct 181 GACGTTGCTTCAGCCATTCATTTACTTGACGCGGCGTTATCAATATCGCCGCGTTCGGAA 240
Query 309 ACTGCGTTAGAACTTAAAGCCAGATCTTTGCTCTTTCTACGTCGCTTCAAAGATGTAGTT 368
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 241 ACTGCGTTAGAACTTAAAGCCAGATCTTTGCTTTTTCTTCGTCGCTTCAAAGATGTAGTT 300
Query 369 GATATGCTTCAAGATTATATCCCAAGCCTCAAGCTTGCCGTGAACGAGGAAGATGGATCT 428
||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 301 AATATGCTTCAAGATTATATTCCAAGCCTCAAGCTCACCGTGAACGAGGAAGATGGATCT 360
Query 429 TATTCATACGAAGG-ttcttcttactcttcctcctcttctcagctctcccggaaacttct 487
|||||||||||||| | |||| ||||||||||||| ||||||||||||||||||||||
Sbjct 361 TATTCATACGAAGGCAGC-TCTTTCTCTTCCTCCTCTGCTCAGCTCTCCCGGAAACTTCT 419
Query 488 ctctgactcatctcctcGCCGTGACTCATCCTTCAAGTGCTTCTCTGTTTCTTACCTGAA 547
||| |||||||||||||||||||||| |||||||||||||||||||||||| || ||||
Sbjct 420 CTCCAACTCATCTCCTCGCCGTGACTCCTCCTTCAAGTGCTTCTCTGTTTCTGACTTGAA 479
Query 548 AAAGAAAATTATGGCTGGGATTTGTAAAAATCGCGATCAAGATAAACAATGGAGATACGT 607
||| |||||||||||||||||||||||||| |||||| ||||||||||||||||||| ||
Sbjct 480 AAATAAAATTATGGCTGGGATTTGTAAAAACCGCGATAAAGATAAACAATGGAGATATGT 539
Query 608 TGTTTTAGGACAAGCTTGTTGCCACCTAGGATTAATGGAGGACGCATTGGTTCTTCTTCA 667
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 540 TGTTTTAGGACAAGCTTGTTGCCACCTAGGATTAATGGAGGACGCATTGATTCTTCTTCA 599
Query 668 AACCGGAAAACGTCTCGCAACAGTCGAGTTCCGCCGTCTAAGTGTAAGCTTGTCAGATGA 727
|||||||||||| |||||||| | ||||||||||||| |||||||||||||| |||||||
Sbjct 600 AACCGGAAAACGCCTCGCAACCGCCGAGTTCCGCCGTTTAAGTGTAAGCTTGGCAGATGA 659
Query 728 TAGCGtctctctcctcctctctgaatcgtcatcatcatcatcctcatcctctTATGCTTT 787
||||||||||||||||||||| ||| |||||||||||||| ||||||||||||||||
Sbjct 660 TAGCGTCTCTCTCCTCCTCTCCGAA---TCATCATCATCATCATCATCCTCTTATGCTTA 716
Query 788 TCCTCCACGCAAAGTCTCCGAATGCGAAACCGTCACTAACCTTCTCGCCCACACGAAAAA 847
||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 717 TCCTCCACGCAAACTCTCCGAATGCGAAACCGTCACTAACCTTCTCGCCCACACAAAAAA 776
Query 848 TCTCCTCCGGCGTCGCTCCGCCGGATTCGCCGCCTTTGACGCTGGACTTTTCGCCGACTC 907
||||||||| |||||| ||||||| ||||||||||||||||||||||| ||| |||||||
Sbjct 777 TCTCCTCCGTCGTCGCGCCGCCGGTTTCGCCGCCTTTGACGCTGGACTATTCTCCGACTC 836
Query 908 GATACGTCACTTCTCCAAAATTCTCGACGGTCGTCGTCGTCCCGCGCCACAAGGATTCCT 967
|| ||||||||||||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct 837 CATCCGTCACTTCTCCAAAATCCTCGACAGTCGTCGTCGTCCCGCGCCACAAGGATTCCT 896
Query 968 CGCTGATTGCTATATGCACCGCGCCGCCGCTTACAAATCCGCCGGGAAAATCGCGGAAGC 1027
||| ||||||||||||||||||||||||||||| | ||||||||| ||||||||||||||
Sbjct 897 CGCCGATTGCTATATGCACCGCGCCGCCGCTTATAGATCCGCCGGTAAAATCGCGGAAGC 956
Query 1028 GATCGCCGATTGTAATAAAACCTTAGCTCTTGAGCCGTCGTGTATCCATGCGTTGGAGAC 1087
||||||||||||||| |||||||||||||||||||||||||| || || |||||||||||
Sbjct 957 GATCGCCGATTGTAACAAAACCTTAGCTCTTGAGCCGTCGTGCATTCACGCGTTGGAGAC 1016
Query 1088 TAGAGCCACTCTTTTGGAAACGGTTCGGTGTCTACCGGATTCGCTTCACGATTTAGAGCA 1147
||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1017 TAGAGCCGCTCTTTTGGAAACAGTTCGGTGTCTACCGGATTCGCTTCACGATTTAGAGCA 1076
Query 1148 TTTGAAGATACTCTACAACACTATCTTACGTGATCGGAAACTTCCCGGACCACCGTGGAA 1207
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1077 CTTGAAGATACTCTACAACACCATCTTACGTGATCGGAAACTTCCCGGACCACCGTGGAA 1136
Query 1208 ACGACACAATGTGAAATACAGAGAGATACCGGGAAAGTTATGCGAACTGACGACGAAATC 1267
|||||||||||||||||||||||| || |||||||| ||||||||| | |||||||||||
Sbjct 1137 ACGACACAATGTGAAATACAGAGAAATTCCGGGAAAATTATGCGAATTAACGACGAAATC 1196
Query 1268 GAAGAAACTGAAAGCAAAAATGGCGAATGGAGAAATCGGAAACGTTGATTATTACGGATT 1327
||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 1197 GAAGAAACTGAAAGCAAAAATCGCGAATGGAGAAATCGGTGACGTTGATTATTACGGATT 1256
Query 1328 GGTCGGAGTTAGACGCGGTTGCACGAGATCGGAGCTTGATCGAGCAAATCTCTTGCTCTG 1387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1257 GGTCGGAGTTAGACGCGGTTGCACGAGATCGGAGCTTGATCGAGCAAATCTCTTGCTCTG 1316
Query 1388 TCTCAGGCATAAACCGGACAAGGCTTTAGCATTCATGGAACGTTGCGATTTCTTCGATCA 1447
||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 1317 TCTCAGGCATAAACCTGACAAGGCTTTAGCATTCATCGAACGCTGCGATTTCTTCGATCA 1376
Query 1448 GAGTGAGATTAGTTCCGTTAAAGATCGAGCGAAGATGTCTTCTTTGTTGCTTTACCGATT 1507
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1377 GAACGAGATTAGTTCCGTTAAAGATCGAGCGAAGATGTCTTCTTTGTTGCTTTACCGATT 1436
Query 1508 GATTCAGAGAGGTTATACAGCTTTGGCGGCAGCGATAGCTGAGGAGGAACAGAGGAAGAA 1567
|||||||||||||||| ||| |||||||||| ||||||| ||||| ||||||||||||||
Sbjct 1437 GATTCAGAGAGGTTATTCAGTTTTGGCGGCAACGATAGCAGAGGAAGAACAGAGGAAGAA 1496
Query 1568 GATGATGGTGTTGACTCAAATGTCAACGAAAACGGTTGAAGAACATGAACCGGTTGAAAA 1627
|||||||| ||||||||||| ||||||||||||||||||||| || ||||||||||||||
Sbjct 1497 GATGATGGCGTTGACTCAAACGTCAACGAAAACGGTTGAAGAGCACGAACCGGTTGAAAA 1556
Query 1628 ATCC-GGTTCAATTACTTTAACCGATTTTGCAGAAATTAAACCGGGGAATTCGAACGCGT 1686
||| ||| |||| | |||||| ||| | ||| ||||||||||| ||||| |||||||
Sbjct 1557 -TCCCGGTACAATAAAGATAACCGGTTTCGTAGATATTAAACCGGGAAATTCAAACGCGT 1615
Query 1687 ACCAAGGAGTTTTCTGCCGAGATCTTGCTGCTGTTGGGAGTTTGTTATCTAGGACCGGAT 1746
|||||||||||||||||||||||||| || ||||||||||| |||||| | ||||| |
Sbjct 1616 TTCAAGGAGTTTTCTGCCGAGATCTTGCCGCCGTTGGGAGTTTATTATCTCGAACCGGTT 1675
Query 1747 TTAACCAACCGATACCAATGAAATACGATGCGATCAGTTGTTAACCGGGAATTTTAGTTT 1806
||||||||||||| ||||||||||||||||| ||||||||||||||| ||||| ||||||
Sbjct 1676 TTAACCAACCGATTCCAATGAAATACGATGCAATCAGTTGTTAACCGAGAATTATAGTTT 1735
Query 1807 GTATATAATTAAG 1819
|| ||||| ||||
Sbjct 1736 GTGTATAAGTAAG 1748
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68943343450
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5