BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G62580.1
Length=961
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486758 jgi|Araly1|486758|fgenesh2_kg.5__2750__AT3G62580.1 1303 0.0
> Ahg486758 jgi|Araly1|486758|fgenesh2_kg.5__2750__AT3G62580.1
Length=883
Score = 1303 bits (705), Expect = 0.0
Identities = 801/847 (95%), Gaps = 8/847 (1%)
Strand=Plus/Plus
Query 8 ACCGAAACTCAATTCGACGTTTAGAAAACGTGTCGCTTCTTCTGATCTCAGCTTCAAAAT 67
||| ||||||||||||||||| |||||||||||||| ||||||| |||||||| | ||||
Sbjct 1 ACCCAAACTCAATTCGACGTTAAGAAAACGTGTCGCGTCTTCTGGTCTCAGCTACCAAAT 60
Query 68 TCGAGAAAGAGTGATCGGGAAAAATAATCATCGGCAATGGGTTGGTATACCAGTTTCTTA 127
|||||||||||||||| || |||| |||||||||| ||||||||||||||||||||| ||
Sbjct 61 TCGAGAAAGAGTGATC-GG-AAAACAATCATCGGCGATGGGTTGGTATACCAGTTTCATA 118
Query 128 GTAGTGGTGGCGTCCTTAGCCGTCGGAGTTATATTCTCGCCGGAGACATTCGGATCGTTG 187
| || | |||||| |||||||||||||||||||||||| |||||||||||||||||| ||
Sbjct 119 GCAGCGTTGGCGTTCTTAGCCGTCGGAGTTATATTCTCACCGGAGACATTCGGATCGCTG 178
Query 188 ACGAATGGAGAGAATTCGGCGAAGATTTCGATATTCCTGAAGCTAGCTCATCTACTCAGT 247
|||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct 179 TCGAATGGAGAGAATTCGGAGAAGATTTCGATATTCCTGAAGCTCGCTCATCTACTCAGT 238
Query 248 TTCGCTACAGCTTGGGGAGCTGCTCTCTGGGCTACCTTCATCGGAGGAATCATCATGTTC 307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 TTCGCTACAGCTTGGGGAGCTGCTCTCTGGGCTACCTTCATCGGAGGAATCATCATGTTC 298
Query 308 AAGAATTTACCGAGGCATCAGTTTGGTAATCTTCAGAGCAAGTTGTTTCCAGCTTACTTC 367
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 AAGAATTTACCGAGGCATCAGTTTGGTAATCTTCAGAGCAAGTTGTTTCCAGCTTACTTC 358
Query 368 ACTTTGGTTGGTTCTTGCTGCGCAATTTCACTCTCTGCTTTTGGTTATTTGCATCCATGG 427
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 ACTTTGGTTGGTTCTTGCTGCGCAATTTCACTCTCTGCTTTTGGTTATTTGCATCCATGG 418
Query 428 AAGTCATCTTCTACGGTCGAGAAATATCAGATAGGGTTTCTCCTATCCGCTTTTGCTTTC 487
|||||||||||||||||||| || |||||| |||| ||||||||||||||||||||||||
Sbjct 419 AAGTCATCTTCTACGGTCGACAAGTATCAGCTAGGCTTTCTCCTATCCGCTTTTGCTTTC 478
Query 488 AATCTCACCAATTTGTTTGTCTTCACTCCCATGACCATCGATATGATGAAACAAAGGCAC 547
||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct 479 AATCTCACCAATTTGTTTGTCTTCACTCCCATGACCATCAATATGATGAAGGAAAGGCAC 538
Query 548 AAAGTAGAGAGGGAAAACAACATTGGAGATGAAGTTGGTTGGTCCAAGAACAGAGAAAAG 607
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 539 AAAGTAGAGAGAGAAAACAACATTGGAGATGAGGTTGGTTGGTCCAAGAACAGAGAAAAG 598
Query 608 GCAAAGAGTATCCCAAAGCTAGCTGCTATGAACAAGAAGTTTGGAATGATTCACGGGTTA 667
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 GCAAAGACCATCCCAAAGCTAGCTGCTATGAACAAGAAGTTTGGAATGATTCACGGGTTG 658
Query 668 TCATCCCTTGCTAACATCTTT-TCATTTGGAAGCCTTGCTATGCATTCTTGGTATCTAGC 726
||||| ||||||||||| ||| |||||||| |||||||||||||||||||||||||||||
Sbjct 659 TCATCGCTTGCTAACAT-TTTGTCATTTGGCAGCCTTGCTATGCATTCTTGGTATCTAGC 717
Query 727 TGGGAAGTTGAATCTCTAGTTTCCTCCTCAATACTCATCTTGTCACAAAGGTCTGACCTT 786
|||||||||||||| |||||||||| ||||||||||||||||||||||||||| |||
Sbjct 718 AGGGAAGTTGAATCTTTAGTTTCCTC---AATACTCATCTTGTCACAAAGGTCTGATCTT 774
Query 787 TTACGCCCCC-TTAATGAATAAATCTCTTGCATTTCCTCGCCAATCCCTTTGTAAGATTG 845
||| |||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 775 TTATGCCCCCCTTATTGAATAAATCTCTTGCATTTCCTCGCCAATCCCTTTGTAAGATTA 834
Query 846 TGTCAGA 852
|||||||
Sbjct 835 TGTCAGA 841
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35683050312
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5