BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G62590.1
Length=2188
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486759 jgi|Araly1|486759|fgenesh2_kg.5__2751__AT3G62590.1 3120 0.0
> Ahg486759 jgi|Araly1|486759|fgenesh2_kg.5__2751__AT3G62590.1
Length=2167
Score = 3120 bits (1689), Expect = 0.0
Identities = 2032/2192 (93%), Gaps = 45/2192 (2%)
Strand=Plus/Plus
Query 1 AGATTTGATCGGACGAGGAAGCTGAGaaaaaaac-aaaaaCGACAAGAGATTCATTCAAA 59
|||||||||||||||||||||||||||| | | | ||||||||||| |||||||||||||
Sbjct 1 AGATTTGATCGGACGAGGAAGCTGAGAAGATACCAAAAAACGACAACAGATTCATTCAAA 60
Query 60 CTTGCACGCCAACGCCGGATTATTCCCGGTGTATACGTATTTTATACGGTTCTATTTAGg 119
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 61 CTTGCACGCCAACGCCGGATTATTCCCGGTGTATACGTATTTTATACGGGTCTATTT--- 117
Query 120 aagaagaagaagaagaagaagaagaagaGGAAATTTTAAGGAAAGAGTTTTTGTT-TGAA 178
| | | | |||||| |||||||||||| |||||||||||||| ||| |
Sbjct 118 ----A-CTCCATTA-ACGAAGAACAAGAGGAAATTTGAAGGAAAGAGTTTTGGTTAAGTG 171
Query 179 TTG--GAATGGAGGGTGTTTTCTTAAAAATGTCGGTGGTTGGA---GTATCTCCGATGAT 233
||| ||||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 172 TTGTTAAATGGAGGGTGTTTTCTTAAAAATGTCGGTGCAAGGAGTTGTATCTCCGATGAT 231
Query 234 ACCGGTGGGACCTTCTTCTTTCATATGCGCCATCGGAGGCTCTGTTGAGGAGAAATCAAC 293
|||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 232 TCCGGTGGGGCCTTCTTCTTTCATACGCGCCATCGGAGGCTCTGTTGAGGAGAAATCAAC 291
Query 294 GGCTGCTTCTCTGCCGCGTTGGGTTTCCCTTCGTCGTCTTCGTCCGCTTGAGTTTCTTCG 353
||||| ||||||||||||||||||||| | ||| |||| |||||||||||||||||||||
Sbjct 292 GGCTGGTTCTCTGCCGCGTTGGGTTTCACGTCGACGTCCTCGTCCGCTTGAGTTTCTTCG 351
Query 354 GATCGGTGGTAAGAGAGAGGAAAAGGGAACGGTAAGAGACGACGACGCCGTTTTGTTGGA 413
|||||||||||||||||| || |||||| ||||||||||||||| |||||||||||||||
Sbjct 352 GATCGGTGGTAAGAGAGATGAGAAGGGACCGGTAAGAGACGACGCCGCCGTTTTGTTGGA 411
Query 414 GAGAAGGGACCGGAACCGCAACGAAAACGATAACGGAAACTGGGTTTTGAAAATTTTGGA 473
||| | || || | || || ||||||||||||||||||||||||||||||||||||
Sbjct 412 GAG-A--GA--GG-AGCGGGTCGGAAACGATAACGGAAACTGGGTTTTGAAAATTTTGGA 465
Query 474 GGTTGGATCAATCTGGAAAGGGAAGAGACAACGATCAGGTGGCGGTGGCGGTGGAGAAGA 533
|||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 466 AGTTGGATCAATCTGGAAAGGGAAGAGACAACGATCA------GGTGGCGGTGGAGAAGA 519
Query 534 GGACGAGGAAGAGGAAGTTGCTGAGCCTAAGAA-G--AAGGAAGATTTATGTGAGGAATG 590
|||||| |||||||||| | |||| | ||||| | |||||||||||||||||||||||
Sbjct 520 GGACGACGAAGAGGAAGATACTGAATCGAAGAAGGACAAGGAAGATTTATGTGAGGAATG 579
Query 591 CGATTTCTGCAGGATCGATGATGATGATGAAGACGAAGAAAAGGAGAAGACAGTG-TT-- 647
||||||||||||| |||||||||||||||| || |||||||||||| |||| ||| ||
Sbjct 580 CGATTTCTGCAGGGTCGATGATGATGATGATGAAGAAGAAAAGGAGGAGACTGTGTTTGG 639
Query 648 T------GAGTTCTCGGAGATGTTAAGCAAAATTCCTGTTGAAGATGCTCAGATGTTTGC 701
| |||||||| ||||||||||||||| |||||||||||||||||||||| |||||
Sbjct 640 TAGAGAAGAGTTCTCTGAGATGTTAAGCAAAGTTCCTGTTGAAGATGCTCAGATCTTTGC 699
Query 702 CAAATTGTCGTTTCTGGGGAATTTGGCTTATTCAATCCCTAAAATCAAGCCTGAGAATCT 761
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 700 CAAATTGTCGTTTTTGGGGAATTTGGCTTATTCAATCCCTAAAATCAAGCCTGAGAATCT 759
Query 762 GTTGAAATATCAGAAACTGAGATTCGTTACATCCTCAATTGAGAAGAGGATGAGTCTTAA 821
|||||||||||||||||||||||||||||| ||||||||||||||||| | |||||||||
Sbjct 760 GTTGAAATATCAGAAACTGAGATTCGTTACTTCCTCAATTGAGAAGAGAACGAGTCTTAA 819
Query 822 GGTTGAAGAGAACAACAATGGCGAGGAAGATGAGGAGAAGAAGAAGCTAATCAACCCTGC 881
||||||||||||||||||||||||||| || ||||||||||||||||| || ||||| ||
Sbjct 820 GGTTGAAGAGAACAACAATGGCGAGGACGAGGAGGAGAAGAAGAAGCTTATTAACCCAGC 879
Query 882 TGTTGCTTACAGAATCGCTGCTTCTGCAGCCTCTCGTCTCTTTTCCCATTCTAAGTCTGT 941
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 880 TGTTGCTTACAGAATCGCTGCTTCTGCTGCTTCTCGTCTCTTTTCCCATTCTAAGTCTGT 939
Query 942 GCTTCCTTTTGGATCATCTAAACGTCAAGACAACGAAGAAGCTTCTCTACTGGCTACTGC 1001
|||||||||||||||||||||||||||| |||||||||||||||||||| |||| |||||
Sbjct 940 GCTTCCTTTTGGATCATCTAAACGTCAACACAACGAAGAAGCTTCTCTATTGGCAACTGC 999
Query 1002 TGATTCGGTTACTGCAGTCGTGGCAGCCAAAGAGGAAGTTAAGCAGGCCGTCGCAGATGA 1061
|||||| ||||| ||||||||||||||||||||||||||||| ||||| ||||| |||||
Sbjct 1000 TGATTCAGTTACGGCAGTCGTGGCAGCCAAAGAGGAAGTTAAACAGGCGGTCGCCGATGA 1059
Query 1062 TCTCAAATCAAACCGTTCACCGCCTTGTGAGTGGTTTGTATGTGATGATGATAAAAGCGG 1121
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 1060 TCTCAAATCAAACCGTTCACCGCCTTGTGAGTGGTTTGTCTGTGATGATGATAAAAGTGG 1119
Query 1122 CACCAGGTTCTTCTTTATTCAGGGATCAGATTCACTGGCCTCATGGCAAGCTAACCTTCT 1181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1120 CACCAGGTTCTTCTTTATTCAGGGATCAGATTCACTGGCCTCATGGCAAGCTAACCTTCT 1179
Query 1182 GTTCGAGCCTGTTCCATTTGAGGACCTTGATGTGCTTGTTCACAGAGGCATATACGAAGC 1241
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1180 GTTCGAGCCTGTTCCATTTGAGGACCTTGATGTGCTTGTTCACAGAGGCATCTACGAAGC 1239
Query 1242 TGCAAAAGGAATATACGAACAGATGTTACCAGAAGTTCATGCCCACCTCAATTCCCGTGG 1301
|||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1240 TGCAAAAGGACTATACGAACAGATGTTACCGGAAGTTCATGCCCACCTCAATTCCCGTGG 1299
Query 1302 CAAGAACCGTGCTTTTCTCAGGTTTAGTGGACATTCTCTAGGCGGAAGCTTGTCATTGTT 1361
|||| |||||||||||||||||||||| ||||||||||||||||||||| ||||| ||||
Sbjct 1300 CAAGCACCGTGCTTTTCTCAGGTTTAGCGGACATTCTCTAGGCGGAAGCCTGTCACTGTT 1359
Query 1362 AGTGAACCTCATGCTTCTGATAAGAGGTCAAGTCCCTGCTTCTTCTCTGCTTCCAGTGAT 1421
||||||||||||||||||||| ||||||||||||| |||||||||||||| || |||||
Sbjct 1360 AGTGAACCTCATGCTTCTGATCCGAGGTCAAGTCCCGGCTTCTTCTCTGCTCCCGGTGAT 1419
Query 1422 CACTTTTGGTTCGCCTTGCATCATGTGCGGAGGCGATAGGCTTCTTCAGAAACTTGGTTT 1481
|||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1420 CACTTTTGGTTCACCATGCATCATGTGCGGAGGTGATAGGCTTCTTCAGAAACTTGGTTT 1479
Query 1482 GCCTAAGAGTCATCTTCTCGGAATCTCAATGCATAGAGATATTGTTCCTCGAGCATTCTC 1541
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1480 GCCTAAGAGTCATCTTCTCGGAATCTCAATGCATAGAGATATTGTTCCCCGAGCATTCTC 1539
Query 1542 CTGCAATTACCCTAACCGAGCCGCAAAGCTTCTCAAGGCATTGAATGGAAACTTCCGGAA 1601
|||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1540 TTGCAATTATCCTAACCGAGCCGCAAAGCTTCTCAAGGCATTGAATGGAAACTTCAGGAA 1599
Query 1602 CCATCCTTGTCTGAATAACCAGAATGTATTGTATTCTCCAATGGGGAAGCTTCTAATTCT 1661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1600 CCATCCTTGTCTGAATAACCAGAATGTATTGTATTCTCCAATGGGGAAGCTTCTAATTCT 1659
Query 1662 GCAACCATCCGAGAGATTCTCTCCCCCACACCCCCTGCTTCCTCCCGGAAGTGGTCTCTA 1721
|||||||||||||||||||||||||||||| || ||||||||||||||||||||| ||||
Sbjct 1660 GCAACCATCCGAGAGATTCTCTCCCCCACATCCTCTGCTTCCTCCCGGAAGTGGTATCTA 1719
Query 1722 TCTCTTAGCATCTAAGAATACCGATGAAACAGAGAAAAGTCTAAGGGCTGCAAAGATTCT 1781
||||||| ||||||||||||| |||||||||||||||||| ||||||||||||||| | |
Sbjct 1720 TCTCTTAACATCTAAGAATACGGATGAAACAGAGAAAAGTTTAAGGGCTGCAAAGAGTGT 1779
Query 1782 CTTCTTTAACTCACCACACCCCCTAGAGATTCTCAGTGATCGTCGTTCTTACGGGTCGGA 1841
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1780 CTTCTTTAACTCACCACACCCCCTAGAGATTCTCAGTGATCGTCGTTCTTACGGGTCAGA 1839
Query 1842 AGGAAAAATCAAAAGAAACCATGACATGAGCTCTTACCTGAAGGCCTTGAGGCATGTGAT 1901
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1840 AGGAAAAATCAAAAGAAACCATGACATGAGCTCTTACCTGAAGGCCTTGAGGCATGTGGT 1899
Query 1902 CCGGAAGGAGCTGAAGCAGATGAAAG-CTGAGCGGGATCAATGGCTGCGCAAGTTCTTTA 1960
|||||||||||||||||||| |||| ||||||||||||| |||| ||||||||||||||
Sbjct 1900 TCGGAAGGAGCTGAAGCAGAT-AAAGGCTGAGCGGGATCAGTGGCGGCGCAAGTTCTTTA 1958
Query 1961 TTATAAACATTTTATTTAGTGGGAGAGATTCTTTGAAACTCATAACAAGATTCGTGGCAT 2020
|||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct 1959 TTATAAACATTTTATTTACTGGGAGAGATTCTTTGAAACTCATAACAAGATTTGTGGCAT 2018
Query 2021 CAAGGAGTAGTCAACTAGTGATCATCTTCTTTCTCCCAATTAGATTGTTAATAATGAGTG 2080
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2019 CAAGGAGTAGTCAACTAGTGATCATCTTCTTTCTCCCAATTAGATTGTTAATTATGAGTG 2078
Query 2081 TCTACAGTGTGGTCTTTCACCATTCACAAGCACATTTTAGTTTCTTCAAGTGAAGCAGCT 2140
|||| |||||||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct 2079 TCTATGGTGTGGTCTTTCACCACTCACAAGCACATTTTAGTTTCTTCAAGTGAAGC---T 2135
Query 2141 TAGGCCTATTCTGTAATAGAATCTATCAAACA 2172
|||||||| ||||||||||||||||||| |||
Sbjct 2136 TAGGCCTACTCTGTAATAGAATCTATCACACA 2167
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82351109690
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5