BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G62600.1
Length=1453
Score E
Sequences producing significant alignments: (Bits) Value
Ahg939346 jgi|Araly1|939346|scaffold_503537.1 1777 0.0
> Ahg939346 jgi|Araly1|939346|scaffold_503537.1
Length=1082
Score = 1777 bits (962), Expect = 0.0
Identities = 1042/1081 (96%), Gaps = 4/1081 (0%)
Strand=Plus/Plus
Query 149 TCC-GATTTCCGTTTCCATGGCGATTCGGTGGTCGGAGCTGTGTATCGTACTGTTCGCTC 207
||| |||||||||||| ||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 5 TCCTGATTTCCGTTTCTATGGCGATTCGGTGGTCGGAGTTGTGTATCGTATTGTTCGCTC 64
Query 208 TTTCCTACGCCATCTGCGTCCTTGCCGGGAAGAGTTACTACGATGTGTTGCAAGTCCCGA 267
|||| || ||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 65 TTTCTTATGCCATTTGCGTCCTTGCCGGGAAGAGTTACTACGATGTGTTGCAAGTTCCGA 124
Query 268 AAGGTGCATCTGATGAACAGATCAAGAGAGCTTATAGGAAACTAGCTTTGAAGTATCATC 327
||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 125 AAGGTGCATCTGACGAACAGATCAAGAGAGCTTATAGGAAACTCGCTTTGAAGTATCATC 184
Query 328 CCGATAAGAATCAAGGAAATGAGGAAGCGACTCGCAAATTCGCTGAGATCAACAATGCTT 387
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 185 CGGATAAGAATCAAGGAAATGAGGAAGCGACTCGCAAATTCGCTGAGATCAACAATGCTT 244
Query 388 ATGAAGTGTTATCGGATGAGGAGAAGAGGGAGATATATAACAAGTATGGTGAAGAGGGAC 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 245 ATGAAGTGTTATCGGATGAGGAGAAGAGGGAGATATATAACAAGTATGGTGAAGAGGGAC 304
Query 448 TTAAACAGTTTTCTGCAAATggaggaagaggaggaggaggaggCGGCATGAATATGCAGG 507
|||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||
Sbjct 305 TTAAACAGTTTTCTGCAAATGGAGGAAGAGGAGGTGGAGGCGGAGGCATGAATATGCAGG 364
Query 508 ACATCTTCAGCTCGTTTTTTGGTGGAGGTTCGATGGAGGAAGAAGAGAAGGTTGTCAAGG 567
|||| || ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 365 ACATTTTTAGCTCGTTTTTCGGTGGAGGTTCGATGGAGGAAGAAGAGAAGGTTGTCAAGG 424
Query 568 GGGATGACGTAATTGTGGAACTTGAGGCAACTCTAGAAGATTTGTACATGGGAGGCTCTA 627
| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 425 GTGATGACGTGATTGTGGAACTTGAGGCAACTCTAGAAGATTTGTACATGGGAGGCTCTA 484
Query 628 TGAAGGTATGGAGGGAAAAGAATGTGATAAAACCAGCTCCTGGAAAGAGAAAGTGTAACT 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 485 TGAAGGTATGGAGGGAAAAGAATGTGATAAAACCAGCTCCTGGAAAGAGAAAGTGTAACT 544
Query 688 GCAGGAACGAGGTCTATCACAGACAAATTGGTCCTGGAATGTTCCAACAGATGACAGAGC 747
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 545 GCAGGAACGAGGTCTACCACAGACAAATTGGTCCTGGAATGTTCCAACAGATGACAGAGC 604
Query 748 AGGTCTGTGACAAATGCCCTAATGTCAAATACGAACGGGAGGGATACTTTGTGACAGTTG 807
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 605 AGGTCTGTGACAAATGCCCTAATGTCAAATACGAACGGGAGGGATACTTTGTGACAGTTG 664
Query 808 ATATCGAGAAAGGAATGAAAGATGGAGAAGAAGTGTCTTTCTATGAAGACGGCGAACCCA 867
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 665 ATATCGAGAAAGGAATGAAAGATGGAGAAGAAGTGTCTTTCTATGAAGACGGTGAACCCA 724
Query 868 TTCTTGACGGTGACCCTGGTGACCTTAAGTTCCGAATCAGAACTGCACCACATGCCCGTT 927
|||| |||||||| ||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 725 TTCTCGACGGTGAACCTGGTGACCTTAAGTTTCGAATCAGAACTGCACCACACACCCGTT 784
Query 928 TCAGAAGGGATGGCAACGATCTACACATGAACGTGAACATTACACTGGTTGAGGCGCTAG 987
|| |||| |||||||||||||||||||||| ||| ||||| |||||||||||||||||||
Sbjct 785 TCCGAAGAGATGGCAACGATCTACACATGACCGTTAACATAACACTGGTTGAGGCGCTAG 844
Query 988 TTGGTTTTGAGAAATCATTCAAACACTTGGATGATCACGAAGTTGACATCAGTTCCAAGG 1047
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 845 TTGGTTTTGAGAAATCATTCAAACACTTAGATGATCACGAAGTTGACATCAGTTCCAAGG 904
Query 1048 GAATTACAAAGCCGAAGGAAGTAAAGAAGTTCAAAGGAGAAGGGATGCCACTTCACTACA 1107
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 905 GAATTACAAAGCCGAAGGAAGTGAAGAAGTTCAAAGGAGAAGGGATGCCACTTCACTACA 964
Query 1108 GCACAAAGAAAGGCAACCTCTTTGTCACTTTTGAGGTTTTGTTTCCGTCTTCTCTCACTG 1167
||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 965 GCACAAAGAAAGGGAACCTCTTTGTCACTTTTGAGGTTTTGTTTCCTTCTTCTCTCACTG 1024
Query 1168 ACGATCAGAAGAAGAAGATTAAAGAAGTCTTTGCTTAGTGctcttctctcgctttcgctc 1227
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |||
Sbjct 1025 ACGATCAGAAGAAGAAGATTAAAGAAGTCTTTGCTTAGTGCTCT-CTCTC--TTTCTCTC 1081
Query 1228 t 1228
|
Sbjct 1082 T 1082
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54354779615
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5