BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G62610.1 Length=1246 Score E Sequences producing significant alignments: (Bits) Value Ahg349318 jgi|Araly1|349318|fgenesh1_pg.C_scaffold_5002710 1404 0.0 > Ahg349318 jgi|Araly1|349318|fgenesh1_pg.C_scaffold_5002710 Length=987 Score = 1404 bits (760), Expect = 0.0 Identities = 910/983 (93%), Gaps = 8/983 (1%) Strand=Plus/Plus Query 1 ATGGGAAGGGCGCCGTGCTGTGAGAAGGTAGGAATTAAGAAGGGGCGCTGGACGGCGGAG 60 |||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||| Sbjct 1 ATGGGAAGAGCGCCTTGCTGTGAGAAGGTAGGAATGAAGAAGGGGCGCTGGACGGCGGAG 60 Query 61 GAAGACCGGACTCTCTCCGACTACATTCAGTCCAACGGCGAAGGATCATGGCGTTCTCTT 120 ||||||| || ||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 61 GAAGACCAGATTCTCTCCGACTACATTCAGTCCAACGGCGAAGGCTCATGGCGTTCTCTT 120 Query 121 CCCAAAAATGCCGGGCTAAAGAGATGTGGAAAGAGCTGTAGATTGAGATGGATAAACTAT 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 CCCAAAAATGCCGGGCTAAAGAGATGTGGAAAGAGCTGTAGATTGAGATGGATAAACTAT 180 Query 181 TTGAGATCAGACATCAAGAGAGGAAACATAACTCCCGAAGAAGAGGACGTCATTGTTAAA 240 |||||||||||| |||||||||||||||||||||| |||||||||||| ||||||||||| Sbjct 181 TTGAGATCAGACCTCAAGAGAGGAAACATAACTCCTGAAGAAGAGGACCTCATTGTTAAA 240 Query 241 CTGCATTCCACTTTGGGAACCAGGTGGTCAACAATTGCGAGCAATCTACCGGGAAGAACA 300 |||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| Sbjct 241 TTGCATTCCACTTTGGGAAACAGGTGGTCAATAATTGCGAGCAATCTACCGGGAAGAACA 300 Query 301 GACAACGAAATAAAAAACTATTGGAATTCTCATCTCAGCCGTAAACTCCACGGTTACTTC 360 ||||| ||||| ||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 301 GACAATGAAATTAAAAACTATTGGAATTCTCATCTCAGCCGTAAATTCCACGGTTACTTC 360 Query 361 AGAAAACCAACTGTCGCCAATACCGTCGAGAATGCGCCTCCGCCTCCTAAGCGTAGACCT 420 || |||||||| ||| | | | ||||||||||||||||||||||| ||||||||||| Sbjct 361 AGGAAACCAACCGTCACTACTGTAGTCGAGAATGCGCCTCCGCCTCCGAAGCGTAGACCC 420 Query 421 GGAAGAACCAGCAGATCCGCCATGAAACCCAAATTTATCCTAAACCCTAAAAACCACAAA 480 ||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| Sbjct 421 GGAAGAACCAGCAGATCGGCCATGAAACCCAAATTTATCCTAAACCTTAAAAACCACAAA 480 Query 481 ACCCCTAATTCTTTTAAAG-CAAACAAAAGTGACATCGTTTTGCCAACTACGACAATAGA 539 | |||||||||||| |||| ||| ||||| ||||| |||||||||||||| |||||||| Sbjct 481 AACCCTAATTCTTT-AAAGGCAAGCAAAAACGACATTGTTTTGCCAACTACAACAATAGA 539 Query 540 GAATGGAGAGGGAGACAAAGAAGACGCATTAATGGTGTTGTCAAGTAGTAGCTTAAGTGG 599 ||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| | Sbjct 540 GAATGGAGAGGGAGAAAAAGAAGACGCATTAATGGGGTTGTCAAGTAGTAGCTTAAGTCG 599 Query 600 AGC-AGAGGAACCCGGTTTAGGACCATGTGGTTATGGAGACGATGGCGATTGTAACCCAA 658 ||| | |||| || |||||| |||||||||| |||||||||||||| |||||||||||| Sbjct 600 AGCCA-AGGAGCCTGGTTTAAGACCATGTGGCTATGGAGACGATGGTTATTGTAACCCAA 658 Query 659 GCATTAATGGCGACGATGGAGCTTTGTGTCTCAATGACGACATTTTCGATTCTTGTTTTC 718 ||||| ||||||||| ||||| ||||| |||||||||||| ||||||||||||||||||| Sbjct 659 GCATTGATGGCGACGTTGGAGTTTTGTCTCTCAATGACGATATTTTCGATTCTTGTTTTC 718 Query 719 TATTGGACGA-CTCTCATGCTGTCCACGTGTCCTCATGTGAGTCGAACAACGTAAAAAAC 777 |||||||||| | || ||||||||||||||||||||||||||||||||| |||||||||| Sbjct 719 TATTGGACGAGC-CTTATGCTGTCCACGTGTCCTCATGTGAGTCGAACAGCGTAAAAAAC 777 Query 778 TCTGAGCCATATGGAGG-GATGTCAGTTGGGCACAAAAATATCGAAACGATGGCTGATGA 836 ||||| ||||||||||| | | || |||||||||||||||||||| ||||||||||||| Sbjct 778 TCTGAACCATATGGAGGTG-TCTCCGTTGGGCACAAAAATATCGAGTCGATGGCTGATGA 836 Query 837 TTTCGTTGACTGGGACTTTGTATGGAGAGAAGGTCAAACCCTTTGGGACGAAAAAGAGGA 896 |||| ||||||||||||||||||| |||||||| |||| ||||||||||||| |||||| Sbjct 837 CTTCGCTGACTGGGACTTTGTATGGGGAGAAGGTGAAACTCTTTGGGACGAAACAGAGGA 896 Query 897 TCTTGATTCGGTTTTGTCGAGGCTGTTAGATGGAGAGGAAATGGAATCTGAGATCAGACA 956 ||||||||||||||||||| |||||||| |||||||||||||||||||||||| |||||| Sbjct 897 TCTTGATTCGGTTTTGTCGTGGCTGTTAAATGGAGAGGAAATGGAATCTGAGACCAGACA 956 Query 957 AAGGGACTCCAACGACTTTGGAG 979 |||| ||||||||||||||||| Sbjct 957 GAGGGGCTCCAACGACTTTGGAG 979 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 46548081657 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5