BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G62610.1
Length=1246
Score E
Sequences producing significant alignments: (Bits) Value
Ahg349318 jgi|Araly1|349318|fgenesh1_pg.C_scaffold_5002710 1404 0.0
> Ahg349318 jgi|Araly1|349318|fgenesh1_pg.C_scaffold_5002710
Length=987
Score = 1404 bits (760), Expect = 0.0
Identities = 910/983 (93%), Gaps = 8/983 (1%)
Strand=Plus/Plus
Query 1 ATGGGAAGGGCGCCGTGCTGTGAGAAGGTAGGAATTAAGAAGGGGCGCTGGACGGCGGAG 60
|||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1 ATGGGAAGAGCGCCTTGCTGTGAGAAGGTAGGAATGAAGAAGGGGCGCTGGACGGCGGAG 60
Query 61 GAAGACCGGACTCTCTCCGACTACATTCAGTCCAACGGCGAAGGATCATGGCGTTCTCTT 120
||||||| || ||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 61 GAAGACCAGATTCTCTCCGACTACATTCAGTCCAACGGCGAAGGCTCATGGCGTTCTCTT 120
Query 121 CCCAAAAATGCCGGGCTAAAGAGATGTGGAAAGAGCTGTAGATTGAGATGGATAAACTAT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CCCAAAAATGCCGGGCTAAAGAGATGTGGAAAGAGCTGTAGATTGAGATGGATAAACTAT 180
Query 181 TTGAGATCAGACATCAAGAGAGGAAACATAACTCCCGAAGAAGAGGACGTCATTGTTAAA 240
|||||||||||| |||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct 181 TTGAGATCAGACCTCAAGAGAGGAAACATAACTCCTGAAGAAGAGGACCTCATTGTTAAA 240
Query 241 CTGCATTCCACTTTGGGAACCAGGTGGTCAACAATTGCGAGCAATCTACCGGGAAGAACA 300
|||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 241 TTGCATTCCACTTTGGGAAACAGGTGGTCAATAATTGCGAGCAATCTACCGGGAAGAACA 300
Query 301 GACAACGAAATAAAAAACTATTGGAATTCTCATCTCAGCCGTAAACTCCACGGTTACTTC 360
||||| ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 301 GACAATGAAATTAAAAACTATTGGAATTCTCATCTCAGCCGTAAATTCCACGGTTACTTC 360
Query 361 AGAAAACCAACTGTCGCCAATACCGTCGAGAATGCGCCTCCGCCTCCTAAGCGTAGACCT 420
|| |||||||| ||| | | | ||||||||||||||||||||||| |||||||||||
Sbjct 361 AGGAAACCAACCGTCACTACTGTAGTCGAGAATGCGCCTCCGCCTCCGAAGCGTAGACCC 420
Query 421 GGAAGAACCAGCAGATCCGCCATGAAACCCAAATTTATCCTAAACCCTAAAAACCACAAA 480
||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||
Sbjct 421 GGAAGAACCAGCAGATCGGCCATGAAACCCAAATTTATCCTAAACCTTAAAAACCACAAA 480
Query 481 ACCCCTAATTCTTTTAAAG-CAAACAAAAGTGACATCGTTTTGCCAACTACGACAATAGA 539
| |||||||||||| |||| ||| ||||| ||||| |||||||||||||| ||||||||
Sbjct 481 AACCCTAATTCTTT-AAAGGCAAGCAAAAACGACATTGTTTTGCCAACTACAACAATAGA 539
Query 540 GAATGGAGAGGGAGACAAAGAAGACGCATTAATGGTGTTGTCAAGTAGTAGCTTAAGTGG 599
||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| |
Sbjct 540 GAATGGAGAGGGAGAAAAAGAAGACGCATTAATGGGGTTGTCAAGTAGTAGCTTAAGTCG 599
Query 600 AGC-AGAGGAACCCGGTTTAGGACCATGTGGTTATGGAGACGATGGCGATTGTAACCCAA 658
||| | |||| || |||||| |||||||||| |||||||||||||| ||||||||||||
Sbjct 600 AGCCA-AGGAGCCTGGTTTAAGACCATGTGGCTATGGAGACGATGGTTATTGTAACCCAA 658
Query 659 GCATTAATGGCGACGATGGAGCTTTGTGTCTCAATGACGACATTTTCGATTCTTGTTTTC 718
||||| ||||||||| ||||| ||||| |||||||||||| |||||||||||||||||||
Sbjct 659 GCATTGATGGCGACGTTGGAGTTTTGTCTCTCAATGACGATATTTTCGATTCTTGTTTTC 718
Query 719 TATTGGACGA-CTCTCATGCTGTCCACGTGTCCTCATGTGAGTCGAACAACGTAAAAAAC 777
|||||||||| | || ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 719 TATTGGACGAGC-CTTATGCTGTCCACGTGTCCTCATGTGAGTCGAACAGCGTAAAAAAC 777
Query 778 TCTGAGCCATATGGAGG-GATGTCAGTTGGGCACAAAAATATCGAAACGATGGCTGATGA 836
||||| ||||||||||| | | || |||||||||||||||||||| |||||||||||||
Sbjct 778 TCTGAACCATATGGAGGTG-TCTCCGTTGGGCACAAAAATATCGAGTCGATGGCTGATGA 836
Query 837 TTTCGTTGACTGGGACTTTGTATGGAGAGAAGGTCAAACCCTTTGGGACGAAAAAGAGGA 896
|||| ||||||||||||||||||| |||||||| |||| ||||||||||||| ||||||
Sbjct 837 CTTCGCTGACTGGGACTTTGTATGGGGAGAAGGTGAAACTCTTTGGGACGAAACAGAGGA 896
Query 897 TCTTGATTCGGTTTTGTCGAGGCTGTTAGATGGAGAGGAAATGGAATCTGAGATCAGACA 956
||||||||||||||||||| |||||||| |||||||||||||||||||||||| ||||||
Sbjct 897 TCTTGATTCGGTTTTGTCGTGGCTGTTAAATGGAGAGGAAATGGAATCTGAGACCAGACA 956
Query 957 AAGGGACTCCAACGACTTTGGAG 979
|||| |||||||||||||||||
Sbjct 957 GAGGGGCTCCAACGACTTTGGAG 979
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46548081657
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5