BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G62620.1
Length=1387
Score E
Sequences producing significant alignments: (Bits) Value
Ahg939348 jgi|Araly1|939348|scaffold_503539.1 1367 0.0
> Ahg939348 jgi|Araly1|939348|scaffold_503539.1
Length=1165
Score = 1367 bits (740), Expect = 0.0
Identities = 1025/1153 (89%), Gaps = 58/1153 (5%)
Strand=Plus/Plus
Query 37 TCTTTCTTCCCGGCGGAGCGACTACGATGTTTGCGGCGGTGAGTGTACGAGCTTCTCTCA 96
||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |
Sbjct 1 TCTTTCTTCCCGGCGGAGCGACTACGATGTTTGCGGCGGTGCGAGTACGAGCTTCTCTTA 60
Query 97 AAACTTTGTTCCATGGAAGACACAGCTCATCTTACAGCCGATATTGTGAAATTGCAGCGA 156
|||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||
Sbjct 61 AAACTTTGTTCCATGGCAGACACAGCTCATCTTTCAGCCGATATTGTGAAATTGCAGCGA 120
Query 157 TTTCGAAGCGTATTTCACAAGATAGATTCAGTGATGGAAAT-CGGATTCTGAATAGCTTG 215
||||||||| ||||||||||||||||||||||||||| ||| | ||||||||||||||||
Sbjct 121 TTTCGAAGCATATTTCACAAGATAGATTCAGTGATGG-AATGCTGATTCTGAATAGCTTG 179
Query 216 AAATTATCTGGAAATGGAGTAGGAATCAAACTGTTCAACTGCGGATTTCATAGTTCTCCA 275
|||||||||||||||||||| ||||||| || ||||| ||| ||||||||||||||||
Sbjct 180 CGATTATCTGGAAATGGAGTAGCAATCAAATTGCTCAACCGCGCATTTCATAGTTCTCCA 239
Query 276 CAGTGT--TGTACATCAGAATCTGATGTAGGAGTGAAAACTCATGCACCTGCGTTATTTA 333
| |||| | ||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 CCGTGTAAT-TAC-TCGGAATCTGATGTAGGAGTGAAAACTCATGCACCTGCGTTATTTA 297
Query 334 GTCATCTTGA-G--GATGATTATTTCTCAGAGTTGGGTCCTGTAGAAAAAGAA---G-T- 385
|||||||||| | |||||||||||||||||||||||| |||||||||||||| | |
Sbjct 298 GTCATCTTGAGGATGATGATTATTTCTCAGAGTTGGGTTCTGTAGAAAAAGAAGCGGATC 357
Query 386 GG-A--TGA----G-A-ATG-TGATTGTG-A---AGA---TGTT-A-ACTGAGAAGCCAG 426
|| | ||| | | ||| | | || | | ||| |||| | |||||| ||||
Sbjct 358 GGAATGTGATTGTGAAGATGTTAACTGAGAAGCCAGAGCCTGTTCAGGTTGAGAATCCAG 417
Query 427 TGATATCTCTGAAAACTAAAGGCAATAAGAAAAAG--AAA-ACGAAGAAGCAGGAGCTAG 483
||||||||||||| ||||||||||| ||||||||| ||| | |||||||||||| | ||
Sbjct 418 TGATATCTCTGAATACTAAAGGCAAGAAGAAAAAGAAAAAGAAGAAGAAGCAGGAACAAG 477
Query 484 CTTCTGATTCTATTTCCAAACCAAAGTTGTTGACTGAAAAGCCAGAAGTTTCTTGGAAAG 543
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 CTTCTGATTCAATTTCGAAACCAAAGTTGTTGACTGAAAAGCCAGAAGTTTCTTGGAAAG 537
Query 544 TAAATGGCAAGAAGAAGACGGAAGCAAATGCATCTTCACCAGCAAAAGATGCTACAGATT 603
| ||||||||||| |||||||||||| |||| ||||||||||||| ||||||||||||||
Sbjct 538 TTAATGGCAAGAAAAAGACGGAAGCACATGCTTCTTCACCAGCAAGAGATGCTACAGATT 597
Query 604 CAAAGGT-TTCATT-CTCCAAGCCAACTAAGTCATCGTCTCAAGTTCAAGATCAGAAATC 661
|||| | ||| || |||||||||||| | ||||||||||||| |||||||||| |||||
Sbjct 598 CAAA--TATTCCTTACTCCAAGCCAACCATGTCATCGTCTCAAATTCAAGATCACAAATC 655
Query 662 CAAATCTCAAAAGAAAATCAGTCCCAGTTCTGAGCC-GGAAAACGAAACTATCTCCAAGG 720
|||||||||||| | ||||||||||||||||||||| || | |||||| || ||||||||
Sbjct 656 CAAATCTCAAAACATAATCAGTCCCAGTTCTGAGCCAGG-AGACGAAAATAGCTCCAAGG 714
Query 721 GTTCTGCGACCTCCAAT--A----C--A-C-T--CTCTTCAGTACTCGTTATAAGGATTG 768
||||||| ||||||||| | | | | | ||||||||||||||||||||||||||
Sbjct 715 GTTCTGCTACCTCCAATACACCCTCAAATCATCCCTCTTCAGTACTCGTTATAAGGATTG 774
Query 769 GTAATCTAAACTCGAAAACAGCTGATTCATTGATACACTCGATGTGCTTTTCGATTGGCC 828
|||||||||| |||||||||||||||||| ||||||||||||||||||| |||||| |||
Sbjct 775 GTAATCTAAATTCGAAAACAGCTGATTCAATGATACACTCGATGTGCTTGTCGATTTGCC 834
Query 829 CTCTCGAAGGGCTTACTAGGGTTAATGAGGACACTGTTGACGTTTTATTTAGATTGAAAG 888
||||||| ||| || ||||||||||||||||||||||||||||||||||| || |||||
Sbjct 835 CTCTCGAGGGGATTGCTAGGGTTAATGAGGACACTGTTGACGTTTTATTTCGAGTGAAAA 894
Query 889 ACCTG-AAGGAAGCAGATTCTATACTGGAAGAGCTAAACGATGCAACCGTAGATAACTCT 947
||| | || ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 895 ACC-GAAACGAAGCAGATTCTATACTGGAAGAGCTAAAAGATGCAACCGTAGATAACTCT 953
Query 948 CAATGGACGGCTGAGATTGTACTGGAAGCCGAAGAAGCTTCCAAAAATCAAATGGGTATG 1007
|||||||||||||||||||||| ||||| ||||||| ||| ||||||||||||||||||
Sbjct 954 CAATGGACGGCTGAGATTGTACAAGAAGCGGAAGAAGGTTCGAAAAATCAAATGGGTATG 1013
Query 1008 AGGATCACCAGTTGTCT-CGAAGATTTGGATAAGCAACTGTTAATGCAACGCATTCTTGG 1066
|| ||||| || ||| | |||||||||||||||||||||| ||||||| |||||||||||
Sbjct 1014 AGAATCACAAGCTGT-TACGAAGATTTGGATAAGCAACTGGTAATGCAGCGCATTCTTGG 1072
Query 1067 AAAAGACTTGGAAGTTCTGCTCCATTCAGTTATGCATCTGGAAAATCACCCAATGGCTCG 1126
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 1073 AAAAGACTTGGAAGTTCTGCTCCATTCAGTAATGCATCTGGAGAATCACCCAATGGCTCG 1132
Query 1127 AGGAAGAGACTAA 1139
|||||||||||||
Sbjct 1133 AGGAAGAGACTAA 1145
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51840823445
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5