BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G62630.1
Length=1449
Score E
Sequences producing significant alignments: (Bits) Value
Ahg939349 jgi|Araly1|939349|scaffold_503540.1 1797 0.0
Ahg894572 jgi|Araly1|894572|Al_scaffold_0006_2568 222 5e-57
> Ahg939349 jgi|Araly1|939349|scaffold_503540.1
Length=1183
Score = 1797 bits (973), Expect = 0.0
Identities = 1120/1190 (94%), Gaps = 13/1190 (1%)
Strand=Plus/Plus
Query 96 CAATCTCTATCACTCTCTACTATGGATCTTGTTGAGAGTTTTTCCCATGGCGATCCTGAT 155
||||||||||||| || ||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1 CAATCTCTATCACACT-TACTATGGATCTTGTTGAGAGTTTTGGCCATGGCGATCCTGAT 59
Query 156 ACTCCGCGTTTCAGTGACGACTTCGGTTCTGGCTCTGCTTGCTCTACTCCGTTCGTTAGC 215
|| |||||||||||||||||||| |||||||||||||||||||| |||||||| |||||
Sbjct 60 ACGCCGCGTTTCAGTGACGACTTTGGTTCTGGCTCTGCTTGCTCGACTCCGTTTGTTAGT 119
Query 216 GCTCCGTCTAGTCCCGGCCGTGGTCCTCCGCCTGGTTATTTCTTCAGTGCACCGTCGAGT 275
||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 120 GCTCCTTCTAGTCCCGGTCGTGGTCCTCCGCCGGGTTATTTCTTCAGTGCACCGTCGAGT 179
Query 276 CCGATGCATTTCTTCCTTTGCTCTGCTTCTTCTTCATCGGAGAATCCTAAAAAGCTTGAC 335
|||||||||||||||||||||||||| ||||||||||| ||||||| |||||||| ||
Sbjct 180 CCGATGCATTTCTTCCTTTGCTCTGCCTCTTCTTCATCTGAGAATCAGAAAAAGCTCGAG 239
Query 336 ACGTCTTCATGCGGCGACTTTGAGTTTGACTTCTCGTCGAGGTTGTCTTCAAGCAGTGGT 395
| || ||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 240 TCCTCGTCATGCGGCGACTTTGAGTTTGATTTCTCGTCGAGGTTGTCTTCGAGCAGTGGT 299
Query 396 CCTTTAGGCGGTGTTTCCATGACTTCAGCTGAAGAGCTTTTCTCTAATGGCCAGATCAAG 455
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 CCTTTAGGCGGCGTTTCCATGACTTCAGCTGAAGAGCTTTTCTCTAATGGCCAGATCAAG 359
Query 456 CCAATGAAGCTCTCTTCGCATCTTCAGAGACCTCAGATCTTATCTCCGCTTCTAGATCTG 515
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 CCGATGAAGCTCTCTTCGCATCTTCAGAGACCTCAGATCTTATCTCCGCTTCTAGATCTG 419
Query 516 GAGAACGAGGAAGAAGACGAC---GATGATGAGACCAAACCAAACGGTGAGAT-G--AAG 569
||||||||||||||||||||| || |||||||||||||||||||||||||| | ||
Sbjct 420 GAGAACGAGGAAGAAGACGACGAAGACGATGAGACCAAACCAAACGGTGAGATGGTTAAA 479
Query 570 CGTGGGAGAGATCTGAAACTAAGAAGCAGATCTGTTCACCGGAAGGCCAGATCCCTCTCT 629
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 480 CGTGGGAGAGATCTGAAACTAAGAAGCAGATCTGTTCACCGGAAAGCCAGATCTCTCTCT 539
Query 630 CCGCTCCGAAACGCAGCGTATCAATGGAACCaagaagaaggagaagaagaagaagtcgcc 689
|||||| |||||||||||||||||||||||||||||| | || || ||||||||||||
Sbjct 540 CCGCTCAGAAACGCAGCGTATCAATGGAACCAAGAAG-A--AG-AG--GAAGAAGTCGCC 593
Query 690 ggagagagagaagttaaagagtgtataagaaagcttcaagaagaCGAAAACGTGCCTTCA 749
|||||||||||||| || ||||||||||| |||||||||||||||||||||||||| |||
Sbjct 594 GGAGAGAGAGAAGTGAAGGAGTGTATAAGGAAGCTTCAAGAAGACGAAAACGTGCCGTCA 653
Query 750 GCTGAAACGACACCGTCTTGTTCTGCTTCTTCTTCACGATCATCGTCTTACGGTAGAAAC 809
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 654 GCTGAAACGACACCGTCTTGTTCTGCTTCTTCTTCACGATCATCTTCTTACGGTAGAAAC 713
Query 810 TCTAAGAAATGGATCTTTCTTAAAGATCTGCTTCACAGAAGCAAAAGCGAAGGAAGAGGC 869
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 714 TCTAAGAAATGGATCTTTCTTAAAGATCTGCTTCACAGAAGCAAAAGCGAAGGAAGAGGC 773
Query 870 AACGGGAAAGAGAAGTTCTGGTCCAACATTTCCTTCTCTCCTTCCAATTTCAAAGACAAG 929
||||| |||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 774 AACGGTAAAGAGAAGTTCTGGTCCAACATTTCATTCTCTCCTTCTAATTTCAAAGACAAG 833
Query 930 AAACTCAAATCATCTCAACTTGAAGAGAAACCGATTCAAGAAACAGTTGACGCTGCCGTG 989
||||||||||| ||||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct 834 AAACTCAAATCTTCTCAACCTGAAGAGAAACCGATTCAAGAAACAGTTGAAGCTGCCGTG 893
Query 990 GAATCAAAGAAGCAGAAGCAGAAACAACCGCCGGCGAAGAAAGCTCCGGTTAACGGAAAA 1049
||||| |||||| ||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 894 GAATCCAAGAAGAAGAAGCAGAAACAACCGCCGGCGAAGAAAGCTCCGGTCACCGGAAAA 953
Query 1050 CCAACCAACGGGATAGCAAAACGGAGAGGATTGCAGCCGTCTGCTCACGAGCTACATTAC 1109
||||| |||||||| || ||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 954 CCAACAAACGGGATCGCGAAACGGAGAGGGTTGCAGCCGTCTGCTCACGAGCTGCATTAC 1013
Query 1110 ACAACGAACAGAGCTCAAGCAGAGGAAATGAAGAAGAGAACATATTTGCCTTACAGGCAT 1169
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1014 ACGACGAACAGAGCTCAAGCAGAGGAGATGAAGAAGAGAACATATTTGCCTTACAGGCAT 1073
Query 1170 GGACTCTTTGGTTGTTTAGGGTTTAGTTCCAAAGGTTACAGTGCCTTGAACGGTTTAGCC 1229
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1074 GGACTCTTTGGCTGTTTAGGGTTTAGTTCCAAAGGTTACAGTGCCTTGAACGGTTTAGCC 1133
Query 1230 CGTAGCTTAAACCCAGTTTCATCTGGTTAAATCATAGATTAAGCAAATGT 1279
|||||||||||||||||||| || |||||| | ||||||||||| |||||
Sbjct 1134 CGTAGCTTAAACCCAGTTTCCTCCGGTTAAGTTATAGATTAAGCCAATGT 1183
> Ahg894572 jgi|Araly1|894572|Al_scaffold_0006_2568
Length=462
Score = 222 bits (120), Expect = 5e-57
Identities = 181/208 (87%), Gaps = 13/208 (6%)
Strand=Plus/Plus
Query 509 AGATCTGGAGAACGAGGAAGAAGACGACGA-TGATGAGACCAAACCAAAC---GGTGAGA 564
|||||||||||||||||||||||||||||| || | ||||||||| || |||| ||
Sbjct 98 AGATCTGGAGAACGAGGAAGAAGACGACGACAGAAAAAACCAAACCAGACGGTGGTGTGA 157
Query 565 TGAAGCGTGGGAGAGATCTGAAACTAAGAAGCAGATCTGTTCACCGGAAGGCCAGATCCC 624
| ||||||||||||||||||||||||||||||||||||||||| ||||| || ||||| |
Sbjct 158 TTAAGCGTGGGAGAGATCTGAAACTAAGAAGCAGATCTGTTCATCGGAAAGCAAGATCTC 217
Query 625 TCTCTCCGCTCCGAAACGCAGCGTATCAATGGAACCaagaagaaggagaag-----aa-g 678
||||||| ||||||||||||||||||||||||||||||||||||| ||||| || |
Sbjct 218 TCTCTCCTCTCCGAAACGCAGCGTATCAATGGAACCAAGAAGAAGAAGAAGTCGCCAAAG 277
Query 679 a-aga-a-gtcgccggagagagagaagt 703
| ||| | ||| ||||||||||||||||
Sbjct 278 AGAGAGAAGTCACCGGAGAGAGAGAAGT 305
Score = 145 bits (78), Expect = 1e-33
Identities = 84/87 (97%), Gaps = 0/87 (0%)
Strand=Plus/Plus
Query 366 TTCTCGTCGAGGTTGTCTTCAAGCAGTGGTCCTTTAGGCGGTGTTTCCATGACTTCAGCT 425
||||||||||||||| |||||| |||||||||||||||||| ||||||||||||||||||
Sbjct 16 TTCTCGTCGAGGTTGGCTTCAAACAGTGGTCCTTTAGGCGGCGTTTCCATGACTTCAGCT 75
Query 426 GAAGAGCTTTTCTCTAATGGCCAGATC 452
|||||||||||||||||||||||||||
Sbjct 76 GAAGAGCTTTTCTCTAATGGCCAGATC 102
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54202418635
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5