BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G62660.1
Length=1957
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486764 jgi|Araly1|486764|fgenesh2_kg.5__2756__AT3G62660.1 2730 0.0
> Ahg486764 jgi|Araly1|486764|fgenesh2_kg.5__2756__AT3G62660.1
Length=1931
Score = 2730 bits (1478), Expect = 0.0
Identities = 1838/1993 (92%), Gaps = 99/1993 (5%)
Strand=Plus/Plus
Query 1 GACAAAATGAATAGAGATAATATATAAACACAAGCATTAGG--CTGTCGAGAAAACATAA 58
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1 GACAAAATGAATAGAGATAATATATAAACACAAGCATTAGGCTCTGTCGAGAAAACATAA 60
Query 59 ATTTTCTATGATTAGGCCATACAAATCATAATAAGTAGTAGAAATACaaaaaaaTCTGTT 118
|||||||||||||||||||||||||| | ||| || | | | | | |
Sbjct 61 ATTTTCTATGATTAGGCCATACAAAT-A-AATCTGTT-T-G---T---------TG-GCT 103
Query 119 TGTTGGCTAAAGAGAAATCGAAGGAATTAGTC-TTTTCACCCATTTttctctctctgtgt 177
| | || | || || || |||||||||||| |||| |||||||||||||||||| | |
Sbjct 104 T-T-GG--A--GA-AA-TCCAAGGAATTAGTCCTTTT-ACCCATTTTTCTCTCTCTCTCT 154
Query 178 ggcttcttcttcttcttcttcttcCTATCAAAATCATCATCATCATCTTCTCTATATTAC 237
||||||||||||||||||||| | ||||||| ||| | |||| | | |||||||||||
Sbjct 155 GGCTTCTTCTTCTTCTTCTTC--C-TATCAAA-TCA-C--CATC-T-T-CTCTATATTAC 204
Query 238 TAAAATAGAGAG--A--GCCA-ACAAAAGAGAGGAGAGGGCGTAAAACAGCAGACGGTGG 292
|||||||||||| | | || | ||||||||||||||||||||||||||||||||||||
Sbjct 205 TAAAATAGAGAGCCAAAGACATA-AAAAGAGAGGAGAGGGCGTAAAACAGCAGACGGTGG 263
Query 293 CGCACCGTAGCACCGCCCCCTCCTAACCTGCGCCTTTCTTCCTTCTCTTTCAtttttttt 352
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 264 CGCACCGTAGCACCGCCCCCTCCTAACCTGCGCCTCTCTTC-TTCTCTTTCATTTTTTTT 322
Query 353 ttttCCGGTTTCAGGAATTATTCCTCTCCTCCTCTCTCAGGTCGCTTCGATCCCAAGGCA 412
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 323 TT--CCGGTTTCAGGAATTATTCCTCTCCTCCTCTCTCAGGTCGCTTCGATCCCAAGGCA 380
Query 413 AAATAGTTTCCTGATTTTT-GATTCTTACCTTCGATTTTGGc-tt----cttcttcttct 466
|| |||||| |||||||| ||||||||||||| |||||| | || |||||||||||
Sbjct 381 AA-TAGTTTTCTGATTTTCCGATTCTTACCTTCAATTTTG-CATTTTTTCTTCTTCTTCT 438
Query 467 tcttcAGATGCATTCACCTAGAAAACTCTGGCGGACATCAAAGGAACCCTAGCTTTTCTC 526
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 439 TCTTCAGATGCATTCACCTACAAAACTCTGGCGGACATCAAAGGAACCCTAGCTTTTCTC 498
Query 527 CGGTCTTGTTATATCGCCTCTATCGCCGCCGATCGGTGGTTTGATTTCAAATCCAAGA-G 585
||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 499 CGGTCTT---ATATCGCCTCTATCGCCGCCGATCGGTGGTTTGATTTCAAATCCAAGAAG 555
Query 586 AAAGAAACGCAGAGGTTC-ATT--T---C-TC--AGGATGCTTTGGATCATGAGATTCTC 636
|| ||||||||||||||| ||| | | || ||||||||||||||||||||||||||
Sbjct 556 AA-GAAACGCAGAGGTTCGATTCGTAGTCGTCTCAGGATGCTTTGGATCATGAGATTCTC 614
Query 637 CGGTTTATTCTCCGCCGCTTTGGTTATCATCGTCCTCTCTCCTTCTCTCCAATCGTTTCC 696
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 615 CGGTTTATTCTCCGCCGCTTTGGTTATCATCGTCCTCTCTCCTTCTCTCCAATCGTTTCC 674
Query 697 TCCAGCTGAAGCTATCAGATCCTCTCATCTCGACGCTTACCTCCG-TTTCCCCTCCTCCG 755
||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct 675 TCCAGCTGAAGCTATCAGATCCTCTCATCTCGACGCTTACCTCCGATTTCCC-TCCTCCG 733
Query 756 ATCCACCGCCGCATAGATTCTCCTTCAGAAAAGCTCCTGTTTTCCGCAATGCCGCCGATT 815
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 734 ATCCACCGCCGCATAGATTCTCCTTCAGAAAAGCTCCTGTTTTCCGCAATGCCGCCGATT 793
Query 816 GCGCCGCCGCAGATATCGATTCCGGCGTCTGTAACCCTTCCTTGGTCCACGTCGCGATTA 875
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 794 GCGCCGCCGCAGATGTCGATTCCGGCGTCTGTAACCCTTCCTTGGTCCACGTCGCGATTA 853
Query 876 CTCTCGATTTCGAGTACCTGCGTGGCTCAATCGCCGCCGTTCATTCGATTCTCAAGCACT 935
|||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 854 CTCTGGATTTCGAGTACCTACGTGGCTCAATCGCCGCCGTTCATTCGATTCTCAAGCATT 913
Query 936 CGTCGTGTCCCGAGAGCGTCTTCTTCCATTTCCTCGTCTCCGAGACTGACCTAGAATCCT 995
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 914 CGTCGTGTCCCGAGAGCGTCTTCTTCCATTTCCTCGTCTCCGAGACTGACCTAGAATCCT 973
Query 996 TGATTCGTTCGACTTTTCCCGAATTGAAATTAAAGGTTTACTACTTCGATCCGGAGATTG 1055
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 974 TGATTCGTTCGACTTTTCCCGAATTGAAATTAAAGGTTTACTTCTTCGATCCGGAGATTG 1033
Query 1056 TACGGACGCTGATCTCAACCTCCGTGAGACAAGCGCTCGAGCAGCCGTTGAATTACGCTA 1115
||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 1034 TACGGACTCTGATCTCAACCTCCGTCAGACAAGCGCTTGAGCAGCCGTTGAATTACGCTC 1093
Query 1116 GAAATTACCTAGCTGACCTTCTCGAGCCTTGCGTGCGTCGCGTGATCTACCTAGATTCCG 1175
|||||||||| ||||| ||||| |||||||||||||||||||| || |||||||||||||
Sbjct 1094 GAAATTACCTTGCTGATCTTCTTGAGCCTTGCGTGCGTCGCGTCATTTACCTAGATTCCG 1153
Query 1176 ATCTAATCGTCGTCGACGACATCGCAAAGCTCTGGATGACGAAACT-GGGATCGAAAACG 1234
||||| ||||||||||||| ||||| ||||| |||| |||||| || |||||||||||||
Sbjct 1154 ATCTAGTCGTCGTCGACGATATCGCGAAGCTGTGGAAGACGAA-CTTGGGATCGAAAACG 1212
Query 1235 ATCGGAGCTCCCGAGTACTGTCACGCGAACTTCACAAAGTATTTCACACCGGCGTTCTGG 1294
||||||||||| || |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1213 ATCGGAGCTCCTGAATACTGTCACGCGAACTTCACGAAGTATTTCACACCGGCGTTCTGG 1272
Query 1295 TCCGACGAGAGGTTCTCCGGAGCTTTCTCCGGGAGGAAACCGTGCTACTTCAACACGGGA 1354
||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct 1273 TCCGACGAGAGGTTCTCCGGAGCTTTCACCGGGAGAAAACCGTGCTACTTCAACACGGGA 1332
Query 1355 GTGATGGTGATGGATCTAGAGAGATGGAGGCGCGTAGGGTACACGGAGGTGATAGAGAAA 1414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333 GTGATGGTGATGGATCTAGAGAGATGGAGGCGCGTAGGGTACACGGAGGTGATAGAGAAA 1392
Query 1415 TGGATGGAGATTCAGAAGAGTGATAGGATTTACGAGCTGGGATCATTGCCGCCGTTCTTG 1474
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 1393 TGGATGGAGATTCAGAAGAGTGATAGGATCTACGAGCTGGGATCATTGCCACCGTTCTTG 1452
Query 1475 TTGGTGTTCGCCGGAGAAGTAGCTCCGATAGAGCATCGGTGGAACCAGCATGGGCTTGGT 1534
|||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1453 CTGGTATTCGCCGGAGAAGTAGCTCCGATAGAGCATCGGTGGAACCAGCATGGACTTGGT 1512
Query 1535 GGAGATAACGTGAGAGGAAGCTGTAGAGATTTACATCCCGGTCCGGTTAGCTTGCTTCAT 1594
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1513 GGAGATAACGTGAGAGGAAGCTGTAGAGATCTACATCCCGGTCCGGTTAGCTTGCTTCAT 1572
Query 1595 TGGTCCGGTAGTGGTAAACCGTGGTTTCGGTTAGATTCGAGACGGCCTTGTCCACTTGAT 1654
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1573 TGGTCCGGTAGTGGTAAACCGTGGTTCCGGTTAGATTCGAGACGGCCTTGTCCACTTGAT 1632
Query 1655 ACTCTTTGGGCACCTTATGATTTGTATGGACACTACTCTCGCTGATGATGAT--TGATGA 1712
||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct 1633 ACTCTTTGGGCACCTTATGATTTGTATGGACACTAGTCTCGCTGATGATGATGATGATGA 1692
Query 1713 T---CTCTGTTATTACATATTATTATAGTCTCAGTCTCAGCTGGTAAATTCTCTCATCTC 1769
| ||||||||||||||||||| | ||||||| || | | |||||||||||||| |
Sbjct 1693 TGATCTCTGTTATTACATATTAT-A--GTCTCAG-CT--G--G-TAAATTCTCTCATCGC 1743
Query 1770 CTTTGACaaaaaa-aaaaaC-ATTCTTTCTT-CT--CT-CTTTTGATTTTACCAACTTTT 1823
||||||||||||| |||||| ||| ||||| || || |||||||||| ||||||||||
Sbjct 1744 CTTTGACAAAAAACAAAAACCATTAATTCTTTCTTTCTTCTTTTGATTT-ACCAACTTTT 1802
Query 1824 GGTTGGAATTTGTTTCGTTACTCTGTATTCTATTCGATTGTTCTGTGCATCAAACCATAG 1883
|||||||||||||||||| ||||||| |||||||||||||||||||||| |||||||||
Sbjct 1803 TGTTGGAATTTGTTTCGTTCCTCTGTACTCTATTCGATTGTTCTGTGCATAAAACCATAG 1862
Query 1884 GATACAATCAGATTTGTTGTTGTACAAACTTTTTTACCATATGTTTCTTTAATATAATTC 1943
|||||| ||||||||||||| ||| ||||||| ||||||||||| |||||||||||||
Sbjct 1863 GATACATTCAGATTTGTTGT---ACAGACTTTTT-ACCATATGTTTTTTTAATATAATTC 1918
Query 1944 TGTCATCTTTTTT 1956
|||||||||||||
Sbjct 1919 TGTCATCTTTTTT 1931
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73552263095
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5