BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G62670.1
Length=1287
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486765 jgi|Araly1|486765|fgenesh2_kg.5__2757__AT3G62670.1 1339 0.0
> Ahg486765 jgi|Araly1|486765|fgenesh2_kg.5__2757__AT3G62670.1
Length=1296
Score = 1339 bits (725), Expect = 0.0
Identities = 1004/1127 (89%), Gaps = 65/1127 (6%)
Strand=Plus/Plus
Query 198 AGTAACGAAATATG-AGAGCGGAGAAGAGGCCATGGCTTTCTTGATGAAGAATAAGCATG 256
|||||||||||| | ||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct 198 AGTAACGAAATACGAAGA-CGGAGAAGAGGCCATGGCTTTCTTGATGAAGAATAAGCAAG 256
Query 257 AGATCGATCTAGTGATTTGGGATTTCCATATGCCCGATATCAATGGACTCGACGCTCTCA 316
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 257 AAATCGATCTAGTGATTTGGGATTTCCATATGCCCGATATCAATGGACTCGACGCTCTCA 316
Query 317 ATATCATTGGTAAACAGATGGATTTACCCGTAGTAATCATGTCTCATGAAT-ACAAGAAG 375
||| |||||||||| |||||||||||||| |||||||||||||||||| || |||| |||
Sbjct 317 ATACCATTGGTAAAGAGATGGATTTACCCTTAGTAATCATGTCTCATG-ATCACAAAAAG 375
Query 376 GAAACGGTGATGGAATCGATTAAGTACGGTGCGTGTGACTTTCTTGTGAAGCCGGTGAGC 435
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 376 GAAACGGTGATGGAATCGATTAAGTACGGCGCGTGTGACTTTCTTGTGAAGCCGGTGAGC 435
Query 436 AAAGAGGTCATTGCAGTTCTATGGCGACATGTTTATCGAAAAAGGATGTCAAAATCTGGT 495
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 436 AAAGAGGTCATTGCAGTTCTATGGCGACATGTTTATCGCAAAAGGATGTCAAAATCTGGT 495
Query 496 TTAGATAAACCGGGTGAATCAGGTACGGTTGAATCAGATCCGGACGAATACGACGATTTA 555
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 496 TTAGATAAACCGGGTGAATCAGGTACGGTTGAATCAGATCCGGACGAATACGACGATTTA 555
Query 556 GAGCAAGACAATCTCTATGAGAGCAACGAAGAAGGCTCCAAAAACACTTGCGATCACAAA 615
| |||||||||||||||| |||||||||||||||||||||||||| ||| |||||| |||
Sbjct 556 GGGCAAGACAATCTCTATCAGAGCAACGAAGAAGGCTCCAAAAACTCTTCCGATCAAAAA 615
Query 616 GAAGAGAAGTCTCCGACCAAGAAACCGCGGATGCAATGGACTCCTGAACTTCACCACAAA 675
| ||||||| || ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 616 GGAGAGAAGCCTGCGACCAAGAAACCGCGGATGCAATGGACTACTGAACTTCACCACAAA 675
Query 676 TTTGAAGTAGCCGTCGAAAAAATGGGCAGCCTTGAGAAGGCTTTTCCAAAGACGATTCTC 735
||||||||||||||||||||| | ||||||||||||||||||||||| ||||||||||||
Sbjct 676 TTTGAAGTAGCCGTCGAAAAACTCGGCAGCCTTGAGAAGGCTTTTCCGAAGACGATTCTC 735
Query 736 AAATATATGCAAGAAGAATTGAATGTCCAGGGGCTCACTAGAAACAACGTAGCCAGTCAT 795
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 736 AAATATATGCAAGAAGAAATGAATGTCCAGGGGCTCACTAGAAACAACGTAGCCAGTCAT 795
Query 796 CTCCAGAAGTACCGTCAAAGTTCCAAA-AA--GACCTGCACTC-CTCAGGAGCCTCAAGA 851
|| |||||||||||||||| ||| ||| || |||| |||||| | |||||||| |||||
Sbjct 796 CTTCAGAAGTACCGTCAAAATTCAAAACAAAAGACCCGCACTCAC-CAGGAGCCCCAAGA 854
Query 852 AGATTTTGTCTGGGGTAATGCTGGGCCAGATGTCACTCTTGCAGCCTCTAAAACGCTCCT 911
||||||| ||||| |||||||||||||||||| |||||| ||||||||||| ||| |||
Sbjct 855 AGATTTTTTCTGGCGTAATGCTGGGCCAGATGCCACTCTCGCAGCCTCTAATCCGCCCCT 914
Query 912 AAGCTC---CC--A-TG-CTA--C-ACC--ATCGTATTTGATAAACAATCAAGCTGCGCC 959
|||||| || | | | | | ||| |||||||||||| |||||||||||||||||
Sbjct 915 AAGCTCGAACCTCAATATCCATGCTACCGCATCGTATTTGATGAACAATCAAGCTGCGCC 974
Query 960 TAGAGGATCATATTTCATGAACAAT-A-------TCCC-------GTATCCATCAACCAG 1004
||||| ||||||||||||||||||| | |||| ||||||||||| |||
Sbjct 975 TAGAGCATCATATTTCATGAACAATCAAGCCGCATCCCCAATCCCGTATCCATCAAACAG 1034
Query 1005 TTGCCTGCCAGTGAACAACAACAACTGCTTCATGACCAACCCTTCCACTTATATTGACCA 1064
|||||||||| ||||||||||||||| |||||||||||| |||| |||||||||||||||
Sbjct 1035 TTGCCTGCCAATGAACAACAACAACTACTTCATGACCAAACCTTTCACTTATATTGACCA 1094
Query 1065 ATTCCAGCACCAGCTGCAGCAGCAGCAGCAACATCAACAGTACCAGTC-TACTCTAAATA 1123
||||||||| || |||| | || | || |||||| || | ||||||||
Sbjct 1095 ATTCCAGCA---GC---AGCA--A-CA--A-CA------GTACCATTCGT-CTCTAAAT- 1134
Query 1124 GTATATC-TGCCATGCTAACCAAGCAAGAATCTAGACACGTGCCATCATCAGCCATGGAA 1182
| || | | |||||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct 1135 -T-TACCCT-CCATGCTAACCAAGCAAGAACCTAGACACGTGCCATTATCAGCCATGGAA 1191
Query 1183 AATTCCGAGCCGCTCATGATCTATAATTCAAATCTACC-TTTCGGT-ATCGACGAGTGTT 1240
|||| ||| ||| ||||||||||||||||| | | || ||||| | | |||||||| ||
Sbjct 1192 AATTTCGATACGCCCATGATCTATAATTCAAGTTT-CCATTTCGATCA-CGACGAGTATT 1249
Query 1241 TCCCACCTGCAGGATTCAACATTTTCGATCAGATTGGTCACAATTGA 1287
||||||||| ||||||||||| |||||||||||||||||| ||||||
Sbjct 1250 TCCCACCTGAAGGATTCAACAATTTCGATCAGATTGGTCAGAATTGA 1296
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48111121254
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5