BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G62680.1
Length=1173
Score E
Sequences producing significant alignments: (Bits) Value
Ahg324693 jgi|Araly1|324693|fgenesh1_pm.C_scaffold_5002237 1046 0.0
Ahg474772 jgi|Araly1|474772|fgenesh2_kg.1__4726__AT1G54970.1 545 2e-154
Ahg924267 jgi|Araly1|924267|scaffold_105548.1 429 2e-119
> Ahg324693 jgi|Araly1|324693|fgenesh1_pm.C_scaffold_5002237
Length=882
Score = 1046 bits (566), Expect = 0.0
Identities = 694/754 (92%), Gaps = 16/754 (2%)
Strand=Plus/Plus
Query 259 CTCCGGTTTACACCCCACCGGTTTACAAG-CATACACCCT-CACCTCCGGTTTACACT-- 314
||||||||||||||||||| | |||||| || || | | |||||||||||||||||
Sbjct 131 CTCCGGTTTACACCCCACCCGCCTACAAGCCA-AC-TCTTCCACCTCCGGTTTACACTCC 188
Query 315 -AAGCCAACTATCCCACCCCCAGTGTACACCCCACCCGTTTACAAGCCAACTCTCTCACC 373
||||||||| ||||| || || ||||||||||| ||||||||||| |||||||||||
Sbjct 189 CCCGCCAACTATTCCACCTCCGGTTTACACCCCACCGGTTTACAAGCCTACTCTCTCACC 248
Query 374 TCCGGTTTACACTAAACCCACTATCCCACCTCCCGTTTACACCCCACCGGTTTACAAGCC 433
||||||||||||||| || |||||||||||||| |||||||| |||||||||||||||||
Sbjct 249 TCCGGTTTACACTAAGCCAACTATCCCACCTCCGGTTTACACTCCACCGGTTTACAAGCC 308
Query 434 -A-------A-CTCCGGTTTACACTAAGCCAACAATCCCACCTCCGGTTTACACTCCACC 484
| | |||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 309 AACTCTCTCACCTCCGGTTTACACTAAGCCAACTATCCCACCTCCGGTTTACACTCCACC 368
Query 485 GGTTTACAAGCCTACTCCCTCTCCCCCGGTCTACAAAAAGTCTCCAAGCTATTCGTCTCC 544
||||||||||||||||||||| || ||||||||||||||||||||||||||||| |||||
Sbjct 369 GGTTTACAAGCCTACTCCCTCACCTCCGGTCTACAAAAAGTCTCCAAGCTATTCTTCTCC 428
Query 545 TCCTCCTCCATACGTACCAAAACCAACCTACACTCCAACCACCAAGCCATACGTCCCAGA 604
|||||||||||| |||||| ||||||||||||||||| ||||||| ||||||||||||||
Sbjct 429 TCCTCCTCCATATGTACCAGAACCAACCTACACTCCACCCACCAAACCATACGTCCCAGA 488
Query 605 GATTCTTAAGGCCGTTGATGGCATCATTCTATGCAAAAACGGCTACGAAACCTACCCTAT 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 489 GATTCTTAAGGCCGTTGATGGCATCATTCTATGCAAAAACGGCTACGAAACCTACCCTAT 548
Query 665 TCTAGGAGCAAAGATACAGATTGTGTGTTCCGACCCAGCATCATACGGTAAAAGCAACAC 724
||||||||||||| || |||||||||| |||||||||||||||||||| |||||||| |
Sbjct 549 TCTAGGAGCAAAGGTAGAGATTGTGTGCTCCGACCCAGCATCATACGGGAAAAGCAAGAA 608
Query 725 CGAGGTTGTGATCTACAGTAATCCAACTGACTCTAAGGGATACTTCCACTTGTCGTTGAC 784
||||||||||||||||||| ||||||||||||||||||||||||||||| |||| |||||
Sbjct 609 CGAGGTTGTGATCTACAGTGATCCAACTGACTCTAAGGGATACTTCCACGTGTCTTTGAC 668
Query 785 CAGTATTAAGGATCTAGCTTACTGTCGTGTCAAGCTCTACTTATCTCCGGTCGAGACTTG 844
|| ||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 669 CAATATCAAGGATCTAGCTTACTGTCGTGTCAAGCTTTACTTCTCTCCGGTCGAGACTTG 728
Query 845 CAAGAACCCGACCAATGTTAACAAGGGTCTCACAGGAGTTCCCTTGGCGTTGTACGGATA 904
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct 729 CAAGAACCCGACCAATGTTAACAAGGGTCTCACAGGAGTTCCCTTGTCGTTGTACGCATA 788
Query 905 CCGTTTCTACCCGGACAAGAACTTGGAGCTCTTTAGCGTCGGACCTTTCTACTACACTGG 964
|||||||||| | |||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct 789 CCGTTTCTACTCTGACAAGAACTTGAAGCTCTTTAGCGTCGGACCTTTCTACTACACCGG 848
Query 965 TCCCAAGGCTGCCCCCGCCACTCCCAAATACtga 998
||||||||||||||||||||||||||||||||||
Sbjct 849 TCCCAAGGCTGCCCCCGCCACTCCCAAATACTGA 882
Score = 532 bits (288), Expect = 2e-150
Identities = 355/387 (92%), Gaps = 5/387 (1%)
Strand=Plus/Plus
Query 57 ATGGCGATCACACGCTCCTCCTTGGCCATTTGCCTCATCCTCTCTTTGGTTACCATAACC 116
||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct 1 ATGGCGATCACACGCGCCTACTTGGCCATTTGCCTCATCCTCTCTTTGGTTACCATAGCC 60
Query 117 ACCGCCGATTACTACTCTCCCTCATCTCCTCCGGTTTACAAATCACCGGAACACAAACCC 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 ACCGCCGATTACTACTCTCCCTCATCTCCTCCGGTTTACAAATCACCGGAACACAAACCC 120
Query 177 ACGCTCCCGTCTCCGGTTTACACTCCACCCGTTTACAAGCCTACCCTCTCC-CCTCCAGT 235
||||| ||||||||||||||||| ||||||| |||||||| || || ||| ||||| ||
Sbjct 121 ACGCTTCCGTCTCCGGTTTACACCCCACCCGCCTACAAGCCAACTCT-TCCACCTCCGGT 179
Query 236 CTACACTAA---GCCAACTATCCCACCTCCGGTTTACACCCCACCGGTTTACAAGCATAC 292
|||||| ||||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct 180 TTACACTCCCCCGCCAACTATTCCACCTCCGGTTTACACCCCACCGGTTTACAAGCCTAC 239
Query 293 ACCCTCACCTCCGGTTTACACTAAGCCAACTATCCCACCCCCAGTGTACACCCCACCCGT 352
| |||||||||||||||||||||||||||||||||||| || || ||||| ||||| ||
Sbjct 240 TCTCTCACCTCCGGTTTACACTAAGCCAACTATCCCACCTCCGGTTTACACTCCACCGGT 299
Query 353 TTACAAGCCAACTCTCTCACCTCCGGTTTACACTAAACCCACTATCCCACCTCCCGTTTA 412
|||||||||||||||||||||||||||||||||||| || |||||||||||||| |||||
Sbjct 300 TTACAAGCCAACTCTCTCACCTCCGGTTTACACTAAGCCAACTATCCCACCTCCGGTTTA 359
Query 413 CACCCCACCGGTTTACAAGCCAACTCC 439
||| ||||||||||||||||| |||||
Sbjct 360 CACTCCACCGGTTTACAAGCCTACTCC 386
Score = 261 bits (141), Expect = 8e-69
Identities = 180/199 (90%), Gaps = 2/199 (1%)
Strand=Plus/Plus
Query 187 CTCCGGTTTACACTCCACCCGTTTACAAGCCTACCCTCTCCCCTCCAGTCTACACTAAGC 246
||||||||||||| ||||| |||||||||||||| ||||| ||||| || ||||||||||
Sbjct 206 CTCCGGTTTACACCCCACCGGTTTACAAGCCTACTCTCTCACCTCCGGTTTACACTAAGC 265
Query 247 CAACTATCCCACCTCCGGTTTACACCCCACCGGTTTACAAG-CATACACCCTCACCTCCG 305
||||||||||||||||||||||||| ||||||||||||||| || || | ||||||||||
Sbjct 266 CAACTATCCCACCTCCGGTTTACACTCCACCGGTTTACAAGCCA-ACTCTCTCACCTCCG 324
Query 306 GTTTACACTAAGCCAACTATCCCACCCCCAGTGTACACCCCACCCGTTTACAAGCCAACT 365
|||||||||||||||||||||||||| || || ||||| ||||| ||||||||||| |||
Sbjct 325 GTTTACACTAAGCCAACTATCCCACCTCCGGTTTACACTCCACCGGTTTACAAGCCTACT 384
Query 366 CTCTCACCTCCGGTTTACA 384
| |||||||||||| ||||
Sbjct 385 CCCTCACCTCCGGTCTACA 403
Score = 196 bits (106), Expect = 2e-49
Identities = 167/194 (86%), Gaps = 14/194 (7%)
Strand=Plus/Plus
Query 339 TACACCCCACCCGTTTACAAGCCAACTC-TCTCACCTCCGGTTTACACT-AAAC-CC-AC 394
||||||||||||| ||||||||||||| || ||||||||||||||||| | || ||
Sbjct 139 TACACCCCACCCGCCTACAAGCCAACTCTTC-CACCTCCGGTTTACACTCCCCCGCCAAC 197
Query 395 TATCCCACCTCCCGTTTACACCCCACCGGTTTACAAGCC-A-------A-CTCCGGTTTA 445
||| |||||||| |||||||||||||||||||||||||| | | ||||||||||
Sbjct 198 TATTCCACCTCCGGTTTACACCCCACCGGTTTACAAGCCTACTCTCTCACCTCCGGTTTA 257
Query 446 CACTAAGCCAACAATCCCACCTCCGGTTTACACTCCACCGGTTTACAAGCCTACTCCCTC 505
|||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 258 CACTAAGCCAACTATCCCACCTCCGGTTTACACTCCACCGGTTTACAAGCCAACTCTCTC 317
Query 506 TCCCCCGGTCTACA 519
|| ||||| ||||
Sbjct 318 ACCTCCGGTTTACA 331
Score = 178 bits (96), Expect = 9e-44
Identities = 116/126 (92%), Gaps = 0/126 (0%)
Strand=Plus/Plus
Query 187 CTCCGGTTTACACTCCACCCGTTTACAAGCCTACCCTCTCCCCTCCAGTCTACACTAAGC 246
||||||||||||||||||| ||||||||||| || ||||| ||||| || ||||||||||
Sbjct 278 CTCCGGTTTACACTCCACCGGTTTACAAGCCAACTCTCTCACCTCCGGTTTACACTAAGC 337
Query 247 CAACTATCCCACCTCCGGTTTACACCCCACCGGTTTACAAGCATACACCCTCACCTCCGG 306
||||||||||||||||||||||||| |||||||||||||||| ||| |||||||||||||
Sbjct 338 CAACTATCCCACCTCCGGTTTACACTCCACCGGTTTACAAGCCTACTCCCTCACCTCCGG 397
Query 307 TTTACA 312
| ||||
Sbjct 398 TCTACA 403
> Ahg474772 jgi|Araly1|474772|fgenesh2_kg.1__4726__AT1G54970.1
Length=1011
Score = 545 bits (295), Expect = 2e-154
Identities = 629/779 (81%), Gaps = 68/779 (9%)
Strand=Plus/Plus
Query 240 ACTAAGCCAACTATCCCACCTCCGGTTTACACCCCACCGGTTTACAAGCATACACCCTCA 299
|||||||||||| | | | |||| || ||||| |||||||||||||||| ||||| |||
Sbjct 271 ACTAAGCCAACTCTACAAGCTCCTGTCTACACTCCACCGGTTTACAAGCCTACACTTTCA 330
Query 300 CCTCCGGTTTACACTAAGCCAACTATCCCACCCCCAG--T----G--TACAC-CCCA-C- 348
||||| |||||||||||||||||| || |||| |||| | | ||||| |||| |
Sbjct 331 CCTCCTGTTTACACTAAGCCAACTCTCTCACCTCCAGTTTACAAGCCTACACTCCCACCT 390
Query 349 CC-G-TTT-AC-AAGCCAACTCTCTCACCTCCGGTTTACACTAAACCCACTA-TCCCACC 403
|| | ||| || ||||||||||||||||||||||||| || || || || | || | ||
Sbjct 391 CCGGTTTTCACTAAGCCAACTCTCTCACCTCCGGTTT--AC-AAGCCTAC-ACTCTCTCC 446
Query 404 TCCCGTTTACACCCCACCGGTTTACAAGC-CAACTCCGGTTTACACTAAGCCAACAATCC 462
||||||||||| || | || | || ||||||||| || ||||| ||| ||
Sbjct 447 TCCCGTTTACA---CA-AAGCCAACTCTCTCACCTCCGGTTT--AC-AAGCCTACACTCT 499
Query 463 CACCTCCGGTTTACACTCCACCGGTTTACAAGCCTACTCCCTCTCCCCCGGTCTACAAAA 522
||||||||||||||||| | | ||| || || || ||| |||||||||||||
Sbjct 500 CACCTCCGGTTTACACT--A--AG---CCAA--CT-CT-CC-ATCCTCCGGTCTACAAAA 547
Query 523 AGTCTCCAAGCTATTCGTCTCCTCCTCCTCCATACGTACCAAAACCAACCTACACTCCAA 582
|||||||||||| || |||||||| |||||||| ||||||||||||||||||||||||
Sbjct 548 AGTCTCCAAGCT-TT--TCTCCTCCACCTCCATATGTACCAAAACCAACCTACACTCCAC 604
Query 583 CCACCAAGCCATACGTCCCAGAGATTC-TTAAGGCCGTTGATGGCATCATTC-TATGCAA 640
||||||||||||||||||| |||| || |||| |||||||||||||||| || |||||||
Sbjct 605 CCACCAAGCCATACGTCCCTGAGA-TCATTAAAGCCGTTGATGGCATCA-TCTTATGCAA 662
Query 641 AAACGGCTACGAAACCTACCCTATTCTAGGAGC-AAAGATACAGATTGTGTGTTCCGACC 699
|||||||||||||| |||||| |||| |||||| |||| | |||||||||| |||||
Sbjct 663 AAACGGCTACGAAAGCTACCCAATTCAAGGAGCAAAAG-CAAAGATTGTGTGCTCCGAGA 721
Query 700 CAGCATCATACGGTAA-AAGCAACACCGAGGTTGTGATCTACAGTAATCCAACTGACTCT 758
| ||||||||| || || ||| | ||||||||| |||||||| |||||||||||||||
Sbjct 722 TGGTATCATACGGGAAGAA-CAAGAACGAGGTTGTTATCTACAGCAATCCAACTGACTCT 780
Query 759 AAGGGATACTTCCACTTGTCGTTGA-CCAGTATTAAGGATCTAGCTTACTGTCGTGTCAA 817
|||||||| |||||| || |||| | ||| ||| ||| | ||| || |||| ||||||||
Sbjct 781 AAGGGATATTTCCACGTGGCGTTAACCCA-TATCAAGAACCTATCTCACTGCCGTGTCAA 839
Query 818 GCTCTACTTATCTCCGGTCGAGACTTGCAAGAACCCGACCAATGTTAACAAGGGTCTCAC 877
|||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 840 ACTCTACACATCTCCGGTCGAGACTTGCAAGAACCCGACCAATGTCAACAAGGGTCTCAC 899
Query 878 AGGAGTTCCCTTGGCGTTGTACGGATACCGTTTCTACCCGGACAAGAACTTGGAGCTCTT 937
||||||| | | || | || || || || || | ||| |||||| | |||||
Sbjct 900 CGGAGTTC--T---C-TTAT-CG-AT---GTA-CT-CC-G-ACATTAACTTGAAACTCTT 944
Query 938 TAGCGTCGGACCTTTCTACTACACTGGTCCCAAGGCTGCCCCCGCCACTCCCAAATACt 996
|| |||||| |||||||||| ||| ||| |||||||||| |||||||||||||||||||
Sbjct 945 TAACGTCGGTCCTTTCTACTTCACCGGTTCCAAGGCTGCTCCCGCCACTCCCAAATACT 1003
Score = 99.0 bits (53), Expect = 7e-20
Identities = 188/246 (76%), Gaps = 37/246 (15%)
Strand=Plus/Plus
Query 187 CTCCGGTTTACACTCCACCCGTTTACAAGCCTACCCTCTCCCCTCCAGTCTACACTAAGC 246
|||| || ||||||||||| |||||||||||||| || || ||||| || ||||||||||
Sbjct 290 CTCCTGTCTACACTCCACCGGTTTACAAGCCTACACTTTCACCTCCTGTTTACACTAAGC 349
Query 247 CAACTATCCCACCTCCGGTTTACACCCCACCGGTTTACAAGCATACAC-CCTCACCTCCG 305
|||| | || | | || || || |||||||||| ||||| || ||||||||
Sbjct 350 CAAC--T-----CT-C----T-CA--CCTCCAGTTTACAAGCCTACACTCC-CACCTCCG 393
Query 306 GTTTACACTAAGCCAACTATCCCACC-CC------C-AGTGTACA--C-C-CCACCCGTT 353
|||| ||||||||||||| || |||| || | || |||| | | || ||||||
Sbjct 394 GTTTTCACTAAGCCAACTCTCTCACCTCCGGTTTACAAGCCTACACTCTCTCCTCCCGTT 453
Query 354 T--AC-AAGCCAACTCTCTCACCTCCGGTTTACACTAAACCCACTA-TCCCACCTCCCGT 409
| || |||||||||||||||||||||||||||| | || || | || ||||||| ||
Sbjct 454 TACACAAAGCCAACTCTCTCACCTCCGGTTTACA--AG-CCTAC-ACTCTCACCTCCGGT 509
Query 410 TTACAC 415
||||||
Sbjct 510 TTACAC 515
Score = 80.5 bits (43), Expect = 3e-14
Identities = 49/52 (94%), Gaps = 0/52 (0%)
Strand=Plus/Plus
Query 276 CCGGTTTACAAGCATACACCCTCACCTCCGGTTTACACTAAGCCAACTATCC 327
||||||||||||| ||||| |||||||||||||||||||||||||||| |||
Sbjct 478 CCGGTTTACAAGCCTACACTCTCACCTCCGGTTTACACTAAGCCAACTCTCC 529
> Ahg924267 jgi|Araly1|924267|scaffold_105548.1
Length=968
Score = 429 bits (232), Expect = 2e-119
Identities = 692/897 (77%), Gaps = 99/897 (11%)
Strand=Plus/Plus
Query 144 CCTCCGGTTTACAAAT-CACCGGAACACAAACCCACGCTCCCGTCTCCGGTTTACACTCC 202
|||||||||||| | | |||||| || ||||| || || || |||||||||||||||||
Sbjct 150 CCTCCGGTTTAC-ATTCCACCGGTTCAAAAACCTACCCTTCCATCTCCGGTTTACACTCC 208
Query 203 ACCCGTTTACAAGCCTACCCTCTCCCCTCCAGTCTACACTAAGCCAACTATCCCACCTCC 262
||| | ||| |||||| ||||| ||||| || || ||||| |||||| | || |||||
Sbjct 209 ACCTGCCCACAGGCCTACACTCTCACCTCCGGTTTATACTAAACCAACTCTACCTCCTCC 268
Query 263 GGTTTACACCCCACCGG-TT-TAC-AAG-CATACAC-CCTCACCTCCGGTTTACACTAAG 317
|| |||||| ||||||| || ||| ||| || || | | || |||| || ||||||
Sbjct 269 GGCTTACACTCCACCGGTTTATACTAAGCCA-ACTCTAC-CAGCTCCTGTCTACACT--- 323
Query 318 CCAAC--TATCCCA-CCCCCAGTGTACACCCCACCCGTTT--AC-AAGCCAACTCTCTCA 371
||| | | | | | || || | | || || || |||| || |||||||||||||||
Sbjct 324 CCACCTGTTTACAAGCCTACACT-TTCA--CCTCCTGTTTACACTAAGCCAACTCTCTCA 380
Query 372 CCTCCGGTTTACACTAAACCCACTATCCCACCTCCCGTTTACACC---CCACCGGTTTAC 428
||||||||||||| | || ||| || ||||||| |||||||| ||| | | | |
Sbjct 381 CCTCCGGTTTACA--AG-CCAACTCTCTCACCTCCGGTTTACACTAAGCCAACTCTCT-C 436
Query 429 AAGCCAACTCCGGTTTACACTAAGCCAACAATCCCACCTCCGGTTTACACTCCACCGGTT 488
|| |||||||||||| | ||| ||| || ||||||||||||||||| | |
Sbjct 437 ---CC--CTCCGGTTTACA--A-GCCTACACTCTCACCTCCGGTTTACACTA-AGC---- 483
Query 489 TACAAGCCTACTCCCTCTCCCCCGGTCTACAAAAAGTCTCCAAGCTATTCGTCTCCTCCT 548
||| | | |||| || | || ||||||||||||||||||||||| || ||||||||
Sbjct 484 --CAA-C-T-CTCCATC-CTCC-GGTCTACAAAAAGTCTCCAAGCT-TT--TCTCCTCCA 533
Query 549 CCTCCATACGTACCAAAACCAACCTACACTCCAACCACCAAGCCATACGTCCCAGAGATT 608
|||||||| |||||||||||||||||||||||| ||||||| ||||||||||| |||||
Sbjct 534 CCTCCATATGTACCAAAACCAACCTACACTCCACCCACCAAACCATACGTCCCTGAGAT- 592
Query 609 C-TTAAGGCCGTTGATGGCATCATTCT-ATGCAAAAACGGCTACGAAACCTACCCTATTC 666
| |||| ||||||||||||||||| || |||||||||||| | | | | |
Sbjct 593 CATTAAAGCCGTTGATGGCATCAT-CTTATGCAAAAACGG--A-G---C--A----A--- 636
Query 667 TAGGAGCAAAGATACAGATTGTGTGTTCCGACCC-AGCATCATACGGTAA-AAGCAACAC 724
| ||||||||| | ||||| ||||| | ||||||||| || || ||| |
Sbjct 637 -A--AGCAAAGAT-----T-GTGTGCTCCGAGATGAT-ATCATACGGAAAGAA-CAAGAA 685
Query 725 CGAGGTTGTGATCTACAGTAATCCAACTGACTCTAAGGGATACTTCCACTTGTCGTTGAC 784
|||||||||||||||||| || |||||||||||||||||||| |||||| || |||| ||
Sbjct 686 CGAGGTTGTGATCTACAGCAACCCAACTGACTCTAAGGGATATTTCCACGTGGCGTTAAC 745
Query 785 C-AGTATTAAGGATCTAGCTTACTGTCGTGTCAAGCTCTACTTATCTCCGGTCGAGACTT 843
| | ||| ||| | ||| || |||| |||||||| |||||| |||||||||||| ||||
Sbjct 746 CCA-TATCAAGAACCTATCTCACTGCCGTGTCAAACTCTACACATCTCCGGTCGAAACTT 804
Query 844 GCAAGAACCCGACCAATGTTAACAAGGGTCTCACAGGAGTTCCCTTGGCGTTGTACGGAT 903
||||||||||||||||||| |||||||||||||| ||||||| ||| || ||||| |
Sbjct 805 GCAAGAACCCGACCAATGTCAACAAGGGTCTCACCGGAGTTCTCTTATCGATGTAC---T 861
Query 904 ACCGTTTCTACCCGGACAAGAACTTGGAGCTCTTTAGCGTCGGACCTTTCTACTACACTG 963
| | | | | ||||||||||| | ||||||| |||||| ||||| |||| ||| |
Sbjct 862 -CGG---C--C--G-ACAAGAACTTGAAACTCTTTAACGTCGGTCCTTTATACTTCACCG 912
Query 964 GTCCCAAGGCTGCCCCCGCCACTCCCAAATACtgatcgtgatgatcat-attatgat 1019
|| |||||||||| ||||||||||||||||||| ||| | || | ||| ||||||||
Sbjct 913 GTTCCAAGGCTGCTCCCGCCACTCCCAAATACTAATCATCATCA-CATTATTATGAT 968
Score = 126 bits (68), Expect = 3e-28
Identities = 189/242 (78%), Gaps = 29/242 (12%)
Strand=Plus/Plus
Query 240 ACTAAGCCAACTATCCCACCTCCGGTTTACACCCCACCGGTTTACAAGCATACACCCTCA 299
|||||||||||| | ||| |||| || ||||| ||||| |||||||||| ||||| |||
Sbjct 291 ACTAAGCCAACTCTACCAGCTCCTGTCTACACTCCACCTGTTTACAAGCCTACACTTTCA 350
Query 300 CCTCCGGTTTACACTAAGCCAACTATCCCACCCCCAGTGTACACCCCACCCGTTTACAAG 359
||||| ||||||||||||||||| | | | | || || || |||||||||
Sbjct 351 CCTCCTGTTTACACTAAGCCAAC--T--------C--TCT-CA--CCTCCGGTTTACAAG 395
Query 360 CCAACTCTCTCACCTCCGGTTTACACTAAACCCACTATC-CCACCTCCCGTTTACACCCC 418
||||||||||||||||||||||||||||| || ||| || || ||||| ||||||| ||
Sbjct 396 CCAACTCTCTCACCTCCGGTTTACACTAAGCCAACTCTCTCC-CCTCCGGTTTACAAGCC 454
Query 419 -AC-CGGTTTACAAGCCAACTCCGGTTTACACTAAGCCAACAATCCCA-CCTCCGGTTTA 475
|| | | | || || ||||||||||||||||||||| ||| | |||||||| ||
Sbjct 455 TACAC--TCT-CA--CC---TCCGGTTTACACTAAGCCAACTCTCC-ATCCTCCGGTCTA 505
Query 476 CA 477
||
Sbjct 506 CA 507
Score = 102 bits (55), Expect = 5e-21
Identities = 109/134 (81%), Gaps = 7/134 (5%)
Strand=Plus/Plus
Query 142 CTCCTCCGGTTTACAAAT-CACCGG--AACAC-AAACCCACGCT-CCCGTCTCCGGTTTA 196
||||||||| |||| | | |||||| | || || || || || || | |||| || ||
Sbjct 262 CTCCTCCGGCTTAC-ACTCCACCGGTTTATACTAAGCCAACTCTACCAG-CTCCTGTCTA 319
Query 197 CACTCCACCCGTTTACAAGCCTACCCTCTCCCCTCCAGTCTACACTAAGCCAACTATCCC 256
||||||||| |||||||||||||| || || ||||| || ||||||||||||||| || |
Sbjct 320 CACTCCACCTGTTTACAAGCCTACACTTTCACCTCCTGTTTACACTAAGCCAACTCTCTC 379
Query 257 ACCTCCGGTTTACA 270
||||||||||||||
Sbjct 380 ACCTCCGGTTTACA 393
Score = 84.2 bits (45), Expect = 2e-15
Identities = 53/57 (93%), Gaps = 0/57 (0%)
Strand=Plus/Plus
Query 271 CCCCACCGGTTTACAAGCATACACCCTCACCTCCGGTTTACACTAAGCCAACTATCC 327
|||| ||||||||||||| ||||| |||||||||||||||||||||||||||| |||
Sbjct 436 CCCCTCCGGTTTACAAGCCTACACTCTCACCTCCGGTTTACACTAAGCCAACTCTCC 492
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43765108716
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5