BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G62690.1
Length=1354
Score E
Sequences producing significant alignments: (Bits) Value
Ahg939357 jgi|Araly1|939357|scaffold_503548.1 1205 0.0
> Ahg939357 jgi|Araly1|939357|scaffold_503548.1
Length=819
Score = 1205 bits (652), Expect = 0.0
Identities = 761/815 (93%), Gaps = 2/815 (0%)
Strand=Plus/Plus
Query 79 TCTCTATCTATCTTCAAAACAATGGGAAACCTGTTTGACAGTAGCAAGACTTTATGGGGA 138
|||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct 5 TCTCTATCTATCTTCAAAACAATGGGAAACATGTTTGACAGTAGCAAGACGATATGGGGA 64
Query 139 AACATGAACCATGGATCGTCACGTTACTCTCTAAACGGCAAAATCATGCTTGCTTCCGTC 198
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 65 AACATGAACCATGGATCGTCACGTTACTCTCTCAACGGCAAAATCATGCTTGCTTCCGTC 124
Query 199 ATCATCCTCTTCGTCGCCGTCATTTTAATCCTCTGTTTCCACAGCTACGCTAGATGGTTA 258
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 125 ATCATCCTCTTCGTCGCCGTCATTTTAATCCTCTGTTTCCACAGCTACGCCAGATGGTTG 184
Query 259 TTCCGCCGTCAAAACCGCCGTATTCGCCGCCGTATCAGTGCTCACCTCCGATCACTCGCC 318
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 185 TTCCGCCGTCAAAACCGCCGTATTCGCCGCCGTATCAGTGCTCACCTCCGATCACTTGCC 244
Query 319 GCCGCTAGAGACCCCACCCAATCATCATCCTCCCTCTCTCCTCTTGATCCGACGGTGCTC 378
|||||| |||||||||| ||||| || || || || ||||||||||||||||||||||||
Sbjct 245 GCCGCTCGAGACCCCACTCAATCTTCCTCATCTCTATCTCCTCTTGATCCGACGGTGCTC 304
Query 379 GAGAAGATCCCTATCTTCGTCTACTCCGTTAAAACCCATGAATCTCCGCTTGAGGAATGC 438
||||||||||| |||||||||||||||| |||||||||||||||||| || ||||| |||
Sbjct 305 GAGAAGATCCCGATCTTCGTCTACTCCGCTAAAACCCATGAATCTCCACTGGAGGAGTGC 364
Query 439 TCTGTTTGCTTGTCGGAATTCGAAGAAGACGACGAAGGACGTGTCCTTCCCAAATGCGGC 498
||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 365 TCTGTTTGCTTATCGGAGTTTGAAGAAGACGACGAAGGACGTGTCCTTCCCAAATGCGGC 424
Query 499 CACGTGTTCCATGTCGATTGTATAGACACGTGGTTCCGGTCCAGATCAAGTTGTCCTCTT 558
||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 425 CACGTGTTCCACGTTGATTGTATCGACACGTGGTTCCGGTCCAGATCAAGTTGTCCTCTT 484
Query 559 TGTAGAGCTCCGGTTCAACCCGCACAGCCGGTTACCGAACCCGAACCGGTTGCTGCTGTG 618
||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||
Sbjct 485 TGTAGAGCTCCGGTTCAACCCGCACAGCCGGTTACCGAATCCGAACCGGTTGCTGCCGTG 544
Query 619 TTTCCATCGGTTAAACCAATTGAGGATACCGAAGCCGGAAGTTCCTCTTCATCGGACGAA 678
|| ||||||||||||||| |||| |||||||||||||||||||| || ||||||||||||
Sbjct 545 TTCCCATCGGTTAAACCAGTTGAAGATACCGAAGCCGGAAGTTCTTCATCATCGGACGAA 604
Query 679 TCCGAATCCTCGACGCCGTCTTCCTCCTCTGGTTCGCCGGTGAGGTTTCCGATGGAAGCT 738
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 605 TCCGAATCCTCGACGCCGTCTTCCTCCTCTGGGTCGCCGGTTAGGTTTCCGATGGAAGCT 664
Query 739 TGTGAGAGAGAACCGATTGATTTAGTCGGTATCATTGTGGAGATTCCCAGGGAATTTCAA 798
|||||||||| ||||||||||||| || ||| ||||||||||| ||||||| |||| ||
Sbjct 665 TGTGAGAGAGCACCGATTGATTTAATCCATATAATTGTGGAGATCCCCAGGGCATTTGAA 724
Query 799 GATTCTAATTCGGATCTACCCGCAGATAACGGGTCGAATCGTCGGGCTTCGTTGA-AAAG 857
||||||||||||| |||||||| |||||||||||||||| ||| |||| || | ||||
Sbjct 725 GATTCTAATTCGGGTCTACCCGGAGATAACGGGTCGAATAACCGGACTTCATT-ACAAAG 783
Query 858 GCTATGGATTATTTGATCACATAATTGGATAGTGA 892
|||||||| |||||||| ||| |||||||||||||
Sbjct 784 GCTATGGAGTATTTGATTACAAAATTGGATAGTGA 818
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50665356693
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5