BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G62710.1
Length=2110
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486769 jgi|Araly1|486769|fgenesh2_kg.5__2761__AT3G62710.1 3127 0.0
> Ahg486769 jgi|Araly1|486769|fgenesh2_kg.5__2761__AT3G62710.1
Length=2075
Score = 3127 bits (1693), Expect = 0.0
Identities = 1968/2099 (94%), Gaps = 26/2099 (1%)
Strand=Plus/Plus
Query 1 AGGATTTAGAAAGATCATTATATCTTTTTAATCAATATTCTGAATTCTCCCTGGTTAAGG 60
||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||
Sbjct 1 AGGATTTAGAAAGATCACTATATCTTTTAAATCAATATTCTGAATTCTCCCTGGTTAAGG 60
Query 61 AGGAGGGTCTCCGTTAATGGCGGCGGCAATGTTCGGCGTCAGGAGCTTTTTCTTCTCGGC 120
|||||||||||| | ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 61 AGGAGGGTCTCCATCAATGGCGGCGGCAATGTACGGCGTCAGGAGCTTTTTCTTCTCGGC 120
Query 121 GGTGATTGTGATACTGTTCGCCGGCCGTTATGGAGAAGCCACCGCAGCTGACAGAGGATA 180
||||||||||||| |||||||| |||||| |||||| |||||||||||||||||||||||
Sbjct 121 GGTGATTGTGATATTGTTCGCCAGCCGTTTTGGAGACGCCACCGCAGCTGACAGAGGATA 180
Query 181 CATTAAGTACAAAGATCCTAAAGTAGCGGTCGAAGAAAGAGTAGAAGACTTGCTGATACG 240
|||||||||||||||||| ||||||||||| ||||||||||||||||||||| |||||||
Sbjct 181 CATTAAGTACAAAGATCCAAAAGTAGCGGTGGAAGAAAGAGTAGAAGACTTGTTGATACG 240
Query 241 TATGACGTTACCGGAGAAACTTGGTCAAATGTGTCAAATTGATCGGTTCAACTTCTCACA 300
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 241 GATGACGTTACCGGAGAAACTTGGTCAAATGTGTCAAATTGATCGGTTCAACTT-T-TCA 298
Query 301 AGTTACCGGTGGTGTGGCCACTGTTGTGCCAGAAATCTTCACAAAGTACATGATCGGAAG 360
| || | | || | | | |||| |||||||||||||| |||||||||||
Sbjct 299 A--TAAC--T--CGT---C-C------GACAGATATCTTCACAAAGTATATGATCGGAAG 342
Query 361 TGTTTTGAGCAATCCGTATGATACCGGGAAAGACATAGCAAAGCGGATATTCCAGACTAA 420
||||||||||||||||| ||||||||||||| | ||| || |||||||||| | | |||
Sbjct 343 TGTTTTGAGCAATCCGTTTGATACCGGGAAAAATATATCAGAGCGGATATTGGATATTAA 402
Query 421 CGCGATGAAGAAATTGAGTCTTTCGACGAGGCTCGGAATCCCTCTGCTTTACGCTGTTGA 480
|| |||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct 403 CGTGATGAAGAAATTGAGTCTTTCGACGAGGCTCGGAATTCCTCTGCTTTACGCTCTTGA 462
Query 481 CGCGGTTCATGGCCACAATACTTTTATTGATGCAACCATTTTCCCCCACAATGTCGGACT 540
||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct 463 CGCGGTTCATGGCCACAGTACTTTTATTGATGCAACCATTTTCCCCCACAACGTCGGACT 522
Query 541 TGGTGCCACTAGGGATCCTCAACTTGTTAAAAAGATTGGGGCTATAACCGCGCAGGAAGT 600
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 523 TGGTGCCACTAGGGATCCTCAACTTGTTAAAAAGATTGGAGCTATAACCGCGCAGGAAGT 582
Query 601 AAGGGCAACAGGAGTCGCTCAAGCTTTTGCACCTTGTGTTGCGGTTTGCAGAGATCCTAG 660
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 583 AAGGGCAACAGGAGTCGCTCAAGTTTTTGCACCTTGTGTTGCGGTTTGCAGAGATCCTAG 642
Query 661 ATGGGGAAGGTGTTACGAGAGCTATAGTGAAGACCCTGCAGTTGTGAATATGATGACCGA 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 643 ATGGGGAAGGTGTTACGAGAGCTATAGTGAAGACCCTGCAGTTGTGAATATGATGACCGA 702
Query 721 AAGTATCATCGATGGATTACAAGGAAATGCTCCTTACCTCGCTGATCCCAAGATTAATGT 780
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 703 AAGTATCATCGATGGATTACAAGGAAATGCTCCTTACCTCGCCGATCCCAAGATTAATGT 762
Query 781 GGCTGGTTGCGCCAAACATTTTGTTGGGGACGGAGGCACAATAAATGGAATCAATGAGAA 840
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 763 GGCTGGTTGCGCCAAACATTTTGTTGGGGACGGAGGGACAATAAATGGAATCAATGAGAA 822
Query 841 CAACACTGTGGCTGATAACGCTACTCTCTTTGGTATCCATATGCCTCCGTTTGAGATAGC 900
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 823 CAACACTGTGGCTGATAACGCTACTCTTTTTGGTATCCATATGCCTCCGTTTGAGATAGC 882
Query 901 AGTGAAGAAAGGGATCGCATCAATCATGGCTTCTTACTCTAGTCTTAACGGTGTTAAGAT 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 883 AGTGAAGAAAGGGATCGCATCAATCATGGCTTCTTACTCTAGTCTTAACGGTGTTAAAAT 942
Query 961 GCATGCAAACCGTGCAATGATCACTGATTACCTCAAGAACACTCTCAAATTCCAAGGCTT 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 943 GCATGCAAACCGTGCAATGATCACTGATTACCTCAAGAACACTCTCAAATTCCAAGGCTT 1002
Query 1021 TGTTATCTCTGACTGGCTCGGAATTGATAAGATCACACCGATAGAAAAATCAAACTACAC 1080
|||||||||||| ||| | |||||||||| ||||||||||||| |||||||||||||||
Sbjct 1003 TGTTATCTCTGATTGGTTTGGAATTGATAGGATCACACCGATACCAAAATCAAACTACAC 1062
Query 1081 TTACTCCATCGAAGCTTCTATTAATGCCGGCATTGACATGGTTATGGTTCCATGGGCGTA 1140
||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1063 TTACTCCATTGAAGCTTCTATTAATGCCGGCATTGACATGGTTATGGTTCCATGGGAGTA 1122
Query 1141 TCCAGAGTACTTGGAGAAATTGACAAATCTAGTGAACGGAGGATACATCCCTATGAGCCG 1200
| ||||||||||| | |||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1123 TAAAGAGTACTTGGCGGAATTGACAAAACTAGTGAACGGAGGATACATCCCTATGAGCCG 1182
Query 1201 CATCGACGATGCTGTTCGAAGGATCTTGAGAGTCAAATTCTCTATCGGTCTCTTTGAGAA 1260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1183 CATCGACGATGCTGTTCGAAGGATCTTGAGAGTCAAATTCTCTATCGGTCTCTTTGAGAA 1242
Query 1261 CTCATTGGCAGATGAAAAACTTCCCACTACTGAGTTTGGATCTGAGGCTCATCGAGAAGT 1320
|||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 1243 CTCATTGGCAGATGAAAAACTTGCCACTCCTGAGTTTGGATCTGAGGCTCATCGAGAAGT 1302
Query 1321 AGGGAGAGAGGCGGTGAGGAAATCAATGGTGCTTCTAAAGAACGGAAAGACAGACGCCGA 1380
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 1303 AGGGAGAGAGGCGGTGAGGAAATCAATGGTGCTTCTAAAGAACGGGAAGACAGACGCGGA 1362
Query 1381 TAAAATTGTGCCGCTCCCGAAGAAGGTGAAAAAGATCGTTGTCGCGGGACGACACGCTAA 1440
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1363 TAAAATTGTGCCGCTCCCGAAGAAGGTGAAAAAGATCGTTGTCGCGGGGCGACACGCTAA 1422
Query 1441 CGACATGGGATGGCAATGCGGTGGCTTTAGTCTCACTTGGCAAGGATTTAACGGAACCGG 1500
| ||||||||||||||||||||||||||| |||||| ||||||||||| |||||||||||
Sbjct 1423 CAACATGGGATGGCAATGCGGTGGCTTTACTCTCACGTGGCAAGGATTCAACGGAACCGG 1482
Query 1501 TGAAGATATGCCCACTAACACGAAACAT--GGACTCCCTACCGGTAAAATAAAAGGAACC 1558
|||||||| ||| |||||| ||| || ||| ||||||||||||||| || ||||||
Sbjct 1483 AGAAGATATCCCCGCTAACAA-AAA-ATTCGGATTCCCTACCGGTAAAACAAGAGGAACA 1540
Query 1559 ACCATATTGGAAGCCATCCAGAAAGCAGTAGATCCCACTACTGAGGTTGTCTACGTGGAG 1618
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1541 ACAATATTGGAAGCCATCCAGAAAGCAGTAGATCCCACTACTGAGGTTGTCTACGTGGAA 1600
Query 1619 GAACCAAACCAAGATACAGCGAAGCTTCACGCCGACGCAGCATACACAATTGTGGTCGTC 1678
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1601 GAACCAAACCAAGATACAGCGAAGCTTCACGCCGACGCAGCATACACAATTGTGGTCGTC 1660
Query 1679 GGAGAAACCCCTTACGCAGAGACATTTGGGGACAGCCCCACGCTGGGTATAACCAAGCCA 1738
||||||||||| |||||||||||| ||||||||| || || || ||||| || | |||
Sbjct 1661 GGAGAAACCCCGTACGCAGAGACACGTGGGGACAGTCCTACTCTAGGTATCGCCGACCCA 1720
Query 1739 GGTCCAGACACGCTCAGCCACACGTGTGGTAGTGGGATGAAGTGTCTAGTGATCCTAGTC 1798
|||||||| |||||||| ||||| |||| ||||||||||||||||||||||||||||
Sbjct 1721 GGTCCAGATACGCTCAGATTGACGTGCGGTAATGGGATGAAGTGTCTAGTGATCCTAGTC 1780
Query 1799 ACTGGACGTCCGCTCGTGATCGAACCTTACATTGATATGCTCGATGCTCTTGCAGTCGCA 1858
|||||||||||||||||||| || |||||| |||||||| ||||||||||||||||||||
Sbjct 1781 ACTGGACGTCCGCTCGTGATGGAGCCTTACCTTGATATGATCGATGCTCTTGCAGTCGCA 1840
Query 1859 TGGCTTCCCGGAACCGAAGGACAAGGAGTTGCTGATGTCTTGTTTGGTGATCATCCCTTC 1918
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1841 TGGCTTCCTGGAACCGAAGGACAAGGAGTCGCTGATGTCTTGTTTGGTGATCATCCCTTC 1900
Query 1919 ACCGGCACGTTGCCTCGCACGTGGATGAAGCATGTTACCCAGCTTCCGATGAACGTTGGC 1978
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 1901 ACCGGCACGTTGCCTCGCACGTGGATGAAGCATGTTGTTCAGCTTCCAATGAACGTTGGC 1960
Query 1979 GACAAGAACTACGACCCTCTCTACCCCTTCGGATACGGAATCAAAACCTAAATCAATAAC 2038
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1961 GACGAGTACTACGACCCTCTCTACCCCTTCGGATACGGAATCAAAACCTAAATCAATAAC 2020
Query 2039 GTACGATAACCATGTATTTATATGAACAATGTAACTGTAACACTTTCCCGATCAATATT 2097
| | |||||||||| |||| |||||||| |||||||||||||||||| |||||||||
Sbjct 2021 G-A---TAACCATGTAATTATGTGAACAATATAACTGTAACACTTTCCCAATCAATATT 2075
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79380070580
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5