BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G62720.1
Length=1791
Score E
Sequences producing significant alignments: (Bits) Value
Ahg939360 jgi|Araly1|939360|scaffold_503551.1 2311 0.0
> Ahg939360 jgi|Araly1|939360|scaffold_503551.1
Length=1421
Score = 2311 bits (1251), Expect = 0.0
Identities = 1361/1413 (96%), Gaps = 12/1413 (1%)
Strand=Plus/Plus
Query 206 GAAGATGATAGAGAAGTGTATAGGAGCGCATCGGTTTCGGAGATTACAGAGATTCATGCG 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 18 GAAGATGATAGAGAAGTGTATAGGAGCGCATCGGTTTCGGAGATTACAGAGATTCTTGCG 77
Query 266 TCAAGGGAAAGTGACGATTCTTTGTCTCGTTCTCACCGTCATCGTCTTACGTGGCACAAT 325
|||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 78 TCAAGGAAAAGTGACGATTCTTTGCCTTGTTCTCACCGTCATCGTCTTACGTGGCACAAT 137
Query 326 CGGAGCCGGTAAGTTTGGTACGCCGGAGAAAGATATCGAGGAGATCCGTGAGCATTTCTT 385
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 138 CGGAGCCGGTAAGTTTGGTACGCCGGAGAAAGATATCGAAGAGATCCGTGAGCATTTCTT 197
Query 386 CTACACGCGTAAACGCGGCGAGCCTCACCGTGTCCTCGTCGAGGTCTCTTCCAAAACGAC 445
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 198 CTACACGCGTAAACGCGGCGAGCCTCACCGTGTTCTCGTCGAGGTCTCTTCCAAAACGAC 257
Query 446 GTCGTCCGAAGACGGAG--G-AAATGGTGGTAACAGCTACGAGACCTTCGATATCAACAA 502
||| ||||||||||||| | ||| |||||||||||||||||||||||||||||||||
Sbjct 258 GTCATCCGAAGACGGAGATGCAAA---TGGTAACAGCTACGAGACCTTCGATATCAACAA 314
Query 503 GCTATTCGTTGATGAAGGAGACGAAGAGAAATCTCGAGACCGGACTAATAAACCTTATTC 562
||||||||||||||||||||| ||||||||||||| ||||||||| ||||||||||||
Sbjct 315 GCTATTCGTTGATGAAGGAGATGAAGAGAAATCTCAAGACCGGAC---TAAACCTTATTC 371
Query 563 TCTTGGTCCCAAGATCTCTGATTGGGATGAGCAGAGACGTGATTGGCTCAAACAAAACCC 622
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 372 TCTCGGTCCCAAGATCTCTGATTGGGATGAGCAGAGACGTGATTGGCTCAAACAAAACCC 431
Query 623 TAGCTTCCCTAATTTCGTGGCGCCAAACAAGCCTAGGGTTCTTCTTGTCACAGGTTCAGC 682
|| ||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 432 TAATTTCTCTAATTTCGTGGCGCCAAAGAAGCCTAGGGTTCTTCTTGTCACAGGTTCAGC 491
Query 683 TCCTAAACCGTGTGAGAATCCTGTAGGAGACCATTACCTCTTGAAATCGATTAAGAACAA 742
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 492 TCCTAAACCGTGTGAGAATCCAGTAGGAGACCATTACCTCTTGAAATCGATTAAGAACAA 551
Query 743 AATCGATTACTGTAGAATACACGGAATCGAGATCTTCTACAACATGGCGTTGCTCGATGC 802
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 552 AATCGATTACTGTAGGATTCACGGAATCGAGATCTTCTACAACATGGCGTTGCTCGATGC 611
Query 803 TGAGATGGCTGGATTCTGGGCTAAGCTTCCGTTGATTAGGAAGTTACTCTTGTCACATCC 862
||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 612 TGAGATGGCTGGATTCTGGGCCAAGCTTCCGTTGATTAGGAAGTTACTCTTGTCTCATCC 671
Query 863 TGAGATTGAGTTTCTATGGTGGATGGATAGTGATGCCATGTTCACGGACATGGTGTTCGA 922
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 672 TGAGATTGAGTTTCTATGGTGGATGGATAGTGATGCCATGTTTACGGACATGGTGTTCGA 731
Query 923 GCTTCCATGGGAGAGGTACAAAGATTACAACTTGGTGATGCATGGTTGGAACGAGATGGT 982
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 732 GCTTCCATGGGAGAGGTATAAAGATTACAACTTGGTGATGCATGGTTGGAACGAGATGGT 791
Query 983 TTATGACCAGAAGAATTGGATTGGTCTCAACACGGGAAGTTTCTTGCTCAGGAACTCACA 1042
||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||
Sbjct 792 TTATGACCAGAAGAATTGGATTGGTCTGAACACAGGAAGTTTCTTGCTTAGGAACTCACA 851
Query 1043 GTGGTCGCTTGATCTTCTTGACGCTTGGGCTCCTATGGGCCCAAAAGGGAAGATCCGAGA 1102
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 852 GTGGTCGCTTGATCTTCTTGACGCTTGGGCTCCTATGGGTCCGAAAGGGAAGATCCGAGA 911
Query 1103 AGAAGCGGGTAAAGTCTTGACCCGGGAACTTAAAGACCGACCCGCTTTCGAAGCTGACGA 1162
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 912 AGAAGCGGGTAAAGTCTTGACCCGGGAACTTAAAGACCGACCGGCGTTCGAAGCTGACGA 971
Query 1163 TCAATCGGCGATGGTTTATCTGCTGGCGACGGAGAGAGAGAAATGGGGAGGCAAAGTTTA 1222
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 972 TCAATCGGCGATGGTTTATCTTCTGGCGACGGAGAGAGAGAAGTGGGGAGGCAAAGTTTA 1031
Query 1223 TCTAGAGAGTGGTTATTACTTGCACGGTTATTGGGGGATTTTGGTAGACCGGTACGAGGA 1282
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1032 TCTAGAGAGTGGTTATTACTTGCACGGTTATTGGGGGATATTGGTAGACCGGTACGAGGA 1091
Query 1283 GATGATTGAGAATCATAAACCGGGTTTTGGAGACCATCGGTGGCCATTGGTTACGCATTT 1342
||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct 1092 AATGATTGAGAATCATAAACCGGGTTTTGGAGACCATCGGTGGCCACTGGTAACGCATTT 1151
Query 1343 CGTCGGGTGTAAACCGTGCGGGAAATTTGGAGATTATCCGGTGGAACGGTGTCTACGGCA 1402
||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 1152 CGTCGGGTGTAAACCGTGCGGGAAATTCGGAGATTATCCGGTGGAACGGTGTCTGCGGCA 1211
Query 1403 GATGGATAGAGCGTTTAATTTCGGAGACAATCAGATCCTTCAAATGTATGGTTTCACGCA 1462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1212 GATGGATAGAGCGTTTAATTTCGGAGACAATCAGATCCTTCAAATGTATGGTTTCACGCA 1271
Query 1463 TAAATCGCTTGGGAGCCGGCGCGTGAAACCCACGCGCAATCAGACGGATAGGCCGCTCGA 1522
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 1272 TAAATCGCTTGGGAGCCGGCGCGTGAAACCCACGCGCAACCAGACGGATAGACCGCTCGA 1331
Query 1523 TGCCAAGGACGAGTTTGGGCTGCTTCATCCGCCGTTCAAAGCGGCCAAGCTTAGTACGAC 1582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1332 TGCCAAGGACGAGTTTGGGCTGCTTCATCCGCCGTTCAAAGCGGCCAAGCTTAGTACGAC 1391
Query 1583 GACGACGTGAGTGAGTGAGAGGATATATTgttt 1615
|||||||||| | ||||| | |||||||||||
Sbjct 1392 GACGACGTGACTC-GTGAG-G-ATATATTGTTT 1421
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67229282425
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5