BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G62730.1
Length=1138
Score E
Sequences producing significant alignments: (Bits) Value
Ahg939361 jgi|Araly1|939361|scaffold_503552.1 1500 0.0
> Ahg939361 jgi|Araly1|939361|scaffold_503552.1
Length=988
Score = 1500 bits (812), Expect = 0.0
Identities = 934/992 (94%), Gaps = 11/992 (1%)
Strand=Plus/Plus
Query 18 AGAGACGAAAGGAAAAGCATGTTTAAACTCTGTCTCGTTCTCGTCTTGGTTATTGCAGTA 77
||| || ||||| |||||||||||||||||||||| ||||| |||||| |||||||| ||
Sbjct 4 AGAAACAAAAGG-AAAGCATGTTTAAACTCTGTCTTGTTCTAGTCTTGCTTATTGCAATA 62
Query 78 GATGCAAATCCGGCTAAGTCCGGTTCT-TGTAGTTGCTCCGGGAATATATCAGCGAGCGA 136
||||||| ||||| | ||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 63 GATGCAAGTCCGGTTCAGTCCGGTTCTCT-TAGTTGCTCCGGGAATATATCAGCGAGCGA 121
Query 137 TGTCGATCGAGTTCATTTCGCGATGAACTTGGAGTTCACCGAGGCCGAGTTCTTCTTAAA 196
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||
Sbjct 122 TGTCGATCGAGTTCATTTCGCGCTGAACTTGGAGTTCACCGAGGCCGAGTTCTTCTTGAA 181
Query 197 AGGGGCTACCGGAAAAGGACTTGATGCCTATAACGCGACACTTGCTAAAGGCGGACCACC 256
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 182 AGGGGCTACCGGAAAAGGACTCGATGCCTATAACGCTACACTTGCTAAAGGCGGACCACC 241
Query 257 GCCGATAGGGGCCAAGAAAGCCAACCTTGATCCTATAACTAATCGAATCATCGAGGAGTT 316
|||| ||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 242 GCCGGTAGGGGCCAAGAAAGCCAATCTTGATCCTATAACTAAACGAATCATCGAGGAGTT 301
Query 317 TGGTTATCAAGAAATCGGTCATCTTAGGGCGATTACGGATATGACGGGAGGAATTCCACG 376
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 302 TGGTTATCAAGAAGTCGGTCATCTTAGGGCGATTACGGATATGACGGGAGGAATTCCGCG 361
Query 377 TCCGCTAATAAATCTGACGAGAGAGAATTTCGCAGTGTTTATGGATAGAGCGGTTGGACG 436
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 362 TCCGCTAATAAATCTGACGAGAGAAAATTTCGCAGTGTTTATGGACAGAGCGGTTGGACG 421
Query 437 CAAATCTAATCCGCGGTTTGATCCTTACGCCAACTCACTCAACTATCTCTTAGCTTCATA 496
|| |||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 422 CAGATCTAACCCGCGGTTTGATCCTTATGCCAACTCACTCAATTATCTCTTAGCTTCATA 481
Query 497 TTATATCCCTTATGTTGGCCTTACCGGTTATGTCGGAACCATCCCTTACCTTGTCTACTT 556
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 482 CTATATCCCTTATGTTGGCCTTACCGGTTATGTCGGAGCCATCCCTTACCTTGTCTACTT 541
Query 557 CAATATCAAAAAGCTAGTGGCGGGTCTATTGGGGGTGGAATCGGGTCAAGACGCAGTGAT 616
|||||||||| |||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 542 CAATATCAAACGGCTAGTGGCGGGTCTACTAGGGGTGGAATCGGGTCAAGACGCAGTGAT 601
Query 617 AAGAACGCTTCTGTACGAGAGACAGAATGAGAAGGTGGAGGAATACGGTGGAGTCACGGT 676
||| ||||||||||||||||||||||| |||| |||||| |||||||| || ||||||||
Sbjct 602 AAGGACGCTTCTGTACGAGAGACAGAACGAGACGGTGGAAGAATACGGCGGTGTCACGGT 661
Query 677 GGCTGAGCTGACCAATGAGATATCTAACCTCCGTAATGAACTCGGTATGTGCGGGATCAA 736
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 662 GGCTGAGCTGACCAATGAGATATCTAACCTCCGTAACGAACTCGGTATGTGCGGGATCAA 721
Query 737 GGACGAAGGCTTGTGCGTGCCGTTGTGGCTAGGAGCGGAGAATCGCACCACCAGCAACAT 796
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 722 GGACGAAGGCTTGTGCGTGCCGTTGTGGCTAGGAGCGGAGAATCGCACCACCAGCAACAT 781
Query 797 CCTCTCCGCTGATCCTTACTCTCTCTCTTATGACCGGACAGCACAAGAGATCCTCAGGGT 856
||||| ||| ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 782 TCTCTCTGCTAATCCTTACTCTCTCTCTTATGACCGGACAGCGCAAGAGATCCTCAGGGT 841
Query 857 TATGTACGGCACCGGTGATGAGCACCGACCTGGCGGGTTTTGGCCGTGTGGTGCCAATGG 916
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 842 TATGTACGGCACCGGCGATGAGCACCGACCCGGCGGGTTTTGGCCGTGTGGTGCCAACGG 901
Query 917 AAGGATCGCTAGGATGTTTCTTGATGAAGGGTGTTATGGTGAATATTGCGTTGTATGTTC 976
||||||||||||||||||||||||||||||||||||||||| | | ||||| | ||||
Sbjct 902 GAGGATCGCTAGGATGTTTCTTGATGAAGGGTGTTATGGTGA-T-T-GCGTT-T--GTTC 955
Query 977 ACATGACAATTAAA-AGTTTCCATTGATACAA 1007
||||||||| || | | |||||||||||||||
Sbjct 956 ACATGACAACTAGATA-TTTCCATTGATACAA 986
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42430806621
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5