BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G62750.1
Length=1643
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486775 jgi|Araly1|486775|fgenesh2_kg.5__2767__AT3G62750.1 2063 0.0
Ahg939363 jgi|Araly1|939363|scaffold_503554.1 1840 0.0
Ahg491999 jgi|Araly1|491999|fgenesh2_kg.7__1432__AT4G27830.1 1724 0.0
Ahg486774 jgi|Araly1|486774|fgenesh2_kg.5__2766__AT4G27830.1 1454 0.0
Ahg326101 jgi|Araly1|326101|fgenesh1_pm.C_scaffold_6001321 340 1e-92
Ahg315321 jgi|Araly1|315321|fgenesh1_pm.C_scaffold_2000354 237 2e-61
> Ahg486775 jgi|Araly1|486775|fgenesh2_kg.5__2767__AT3G62750.1
Length=1641
Score = 2063 bits (1117), Expect = 0.0
Identities = 1417/1556 (91%), Gaps = 43/1556 (3%)
Strand=Plus/Plus
Query 1 AAAAATGAAACATTTCAATCTGTTATCCATTATTCTGGTTATCGTTTTGGCGACAAGCTA 60
|||||||||||||||| ||||||| ||||||||||||| ||||||||||| |||||||||
Sbjct 1 AAAAATGAAACATTTCTATCTGTTTTCCATTATTCTGGCTATCGTTTTGGTGACAAGCTA 60
Query 61 CATTGATGCCTTCACCAGAAACGATTTTCCAGAGGATTTCCTCTTCGGAGCCGGTACTTC 120
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 61 CATTGATGCCTTCACCAGAACCGATTTTCCAGAGGATTTCCTCTTCGGAGCCGCTACTTC 120
Query 121 TGCTTATCAGTGGGAAGGAGCTGCTAATGAAGACGGAAGAACTCCTAGCGTCTGGGATAC 180
|||||||||||||||||| |||| | ||||||||||||||||||||||||||||||||||
Sbjct 121 TGCTTATCAGTGGGAAGGTGCTGTTGATGAAGACGGAAGAACTCCTAGCGTCTGGGATAC 180
Query 181 AACCTCCCACTGTTATAATGGAAGTAATGGAGATATAGCATGTGATGGGTATCACAAATA 240
|| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 AAGCTCCCACTGTCATAATGGAAGTAATGGAGATATAGCATGTGATGGGTATCACAAATA 240
Query 241 CAAGGAAGATGTTAAGTTGATGGCAGAA-ATGGGCTTAGAATCATTCAGATTCTCTATCT 299
|||||||||||||||| ||||||| || |||||||||||| ||||||||||||| ||||
Sbjct 241 CAAGGAAGATGTTAAGCTGATGGC-TAATATGGGCTTAGAAGCATTCAGATTCTCCATCT 299
Query 300 CCTGGTCAAGACTTATACCTAATGGAAGAGGACGCATTAACCCAAAAGGTTTATTGTTTT 359
| ||| ||||||||||||||||||||||||||| |||||||||||||||| |||||||||
Sbjct 300 CTTGGACAAGACTTATACCTAATGGAAGAGGACCCATTAACCCAAAAGGTCTATTGTTTT 359
Query 360 ACAAGAATCTCATCAAAGAGCTACGAAGCCATGGAATCGAACCTCACGTTACACTTTACC 419
||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 360 ACAAGAACCTCATTAAAGAACTACGAAGCCATGGAATCGAACCTCACGTTACACTTTACC 419
Query 420 ACTACGATCTTCCTCAGTCTCTTGAAGATGAGTATGGAGGATGGATCAACCACAAAATCA 479
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct 420 ACTACGATCTTCCTCAGTCTCTTGAAGATGAGTATGGAGGATGGATCAACCGCAAAATAA 479
Query 480 TAGAAGACTTTACAGCTTTTGCAGATGTATGCTTCAGAGAGTTTGGGGAGGATGTGAAGT 539
|||||||||| || | ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 480 TAGAAGACTTCACTGGTTTTGCAGATGTATGCTTCAGAGAGTTTGGGGACGATGTGAAGT 539
Query 540 TATGGACTACAATCAACGAAGCTACAATCTTCGCCTTTGCTTTTTATGGCAAAG-ACGTT 598
|||||||||||||||||||||||||||| ||||||||||||||||||||| ||| | |
Sbjct 540 TATGGACTACAATCAACGAAGCTACAATATTCGCCTTTGCTTTTTATGGCGAAGGAA-TA 598
Query 599 AGGTATGGAAATTGT------AC----TACA------G-------G-AAATTATTGTATG 634
| || |||| ||||| || |||| | | ||||| |||||||
Sbjct 599 AAGTTTGGACATTGTTCTCCTACCAAATACATCAATTGCTCTACCGGAAATTCTTGTATG 658
Query 635 GAAACATATATTGCAGGCCATAACATGTTGCTAGCTCATGCCTCTGCTTCAAATTTGTAT 694
||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct 659 GAAACATATATTGCAGGCCATAACATGTTGCTAGCTCATGCCTCTGCCTCAAGTTTGTAT 718
Query 695 AAACTAAAGTACAAGAGTAAGCAAAGAGGATCCATAGGCCTTAGTATATTTGCATTGGGG 754
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 719 AAACTAAAGTACAAGAGTAAGCAAGGAGGATCCATAGGCCTTAGTATATTTGCATTGGGG 778
Query 755 TTAACTCCTTATACAAACTCCAAGGACGATGAAATCGCAACTCAAAGAGCTAAAGCTTTC 814
||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 779 TTATCTCCTTATACAAACTCCAAGGACGATGAAATCGCAACTGAAAGAGCTAAAGCTTTC 838
Query 815 CTCTATGGATGGATGTTGAAGCCTTTGGTATTTGGGGACTATCCGGATGAAATGAAGAGA 874
|||| ||| |||||||||||||||||||||| |||||||||||||||||||||||| |||
Sbjct 839 CTCTTTGGCTGGATGTTGAAGCCTTTGGTATATGGGGACTATCCGGATGAAATGAAAAGA 898
Query 875 ACCTTGGGATCGAGATTACCGGTTTTCTCAGAGGAAGAATCAGAGCAAGTTAAAGGATCA 934
| |||||||||||||||||||||||||||||||||||| || |||||||| ||||| |||
Sbjct 899 ATCTTGGGATCGAGATTACCGGTTTTCTCAGAGGAAGAGTCGGAGCAAGTGAAAGGGTCA 958
Query 935 TCTGACTTTGTAGGAATTATACATTACACGACAGTTTATGTCACAAACC-AGCCCGCACC 993
|||||||||||||||||||| || ||||||||||| ||||||||||||| | ||||||||
Sbjct 959 TCTGACTTTGTAGGAATTATTCACTACACGACAGTCTATGTCACAAACCGA-CCCGCACC 1017
Query 994 TTATATCTTTCCCAGCAGCACTAACAAAGACTTCTTTACAGACATGGGCGCGTATATTAT 1053
|||||| |||||||| ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1018 TTATATATTTCCCAGTAGCACTAACAAAGGCTTCTTTACAGACATGGGCGCGTATATTAT 1077
Query 1054 CTCCACTGGGAACTCTTCATCATTCGTGTTTGATGCTGTTCCATGGGGTCTGGAAGGTGT 1113
||| ||||||| ||||||||||||| ||||||||| ||||||||||||||||||| |
Sbjct 1078 TTCCGCTGGGAATTCTTCATCATTCGAGTTTGATGCCACTCCATGGGGTCTGGAAGGTAT 1137
Query 1114 TCTTCAGCATATAAAGCATCGCTATAACAATCCTCCAATCTACATTCTTGAAAATGGTTC 1173
|||| ||||| ||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 1138 TCTTGAGCATCTAAAGCAAAGCTATAACAATCCTCCAATCTACATTCTTGAAAATGGTAC 1197
Query 1174 ACCGATGAAACACGATTCGATGCTACAAGACACACCAAGAGTTGAATACATTCAAGCTTA 1233
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1198 ACCGATGAAACACGATTCGATGCTACAAGACACACCAAGAGTTGAATACATTCAAGCTTA 1257
Query 1234 CATTGGTGCTGTCCTCAACGCTATCAAGAGTGGATCGGACACGAGAGGTTACTTCGTATG 1293
||||||||| || |||||||| ||||||| ||||||||||| ||||||||||||||||||
Sbjct 1258 CATTGGTGCAGTGCTCAACGCCATCAAGAATGGATCGGACATGAGAGGTTACTTCGTATG 1317
Query 1294 GTCGCTGATAGATTTGTTTGAGGTA-CAGGTTGGATATAAAAGCAGCTTCGGAATGTACT 1352
||||||||||||||||| |||| || | |||||| |||| || |||||||||||||||||
Sbjct 1318 GTCGCTGATAGATTTGTATGAGATAAC-GGTTGGTTATACAACCAGCTTCGGAATGTACT 1376
Query 1353 ATGTCAATTTTAGCGATCCTGGTCGCAAGAGGTCGCC-AAAGCTCTCTGCTTCTTGGTAC 1411
|||| ||||| |||||||||||||||||||||||||| ||| |||||||||| |||||||
Sbjct 1377 ATGTAAATTTCAGCGATCCTGGTCGCAAGAGGTCGCCGAAA-CTCTCTGCTTTTTGGTAC 1435
Query 1412 ACTGGTTTTCTCAATGGTACAATTGATGTTGCTTCTCAAGATATGACTCAG-TTGCAGAG 1470
| ||||||||||| |||||||||||||||||| ||||||| |||||| || |||||
Sbjct 1436 TCAGGTTTTCTCAAAGGTACAATTGATGTTGCTA---AAGATATTACTCAGCTT-CAGAG 1491
Query 1471 AAATTTCTCTG--G-CTCTTCTTCACTGTAATGTTAT-AATATTAACGATTCTGGT 1522
|| ||||||| | ||| |||||||| ||||||| | || || || ||| |||||
Sbjct 1492 CAACTTCTCTGCAGGCTCGTCTTCACTCTAATGTTTTTAAAATAAAGGATCCTGGT 1547
> Ahg939363 jgi|Araly1|939363|scaffold_503554.1
Length=1555
Score = 1840 bits (996), Expect = 0.0
Identities = 1380/1558 (89%), Gaps = 55/1558 (4%)
Strand=Plus/Plus
Query 1 AAAAATGAAACATTTCAATCTGTTATCCA---TTATTCTGGTTATCGTTTTGGCGACAAG 57
||||||||||| ||| |||||| || | |||||||||| | ||||||||| ||| |
Sbjct 17 AAAAATGAAACCTTTGTCTCTGTTTTCTAGTTTTATTCTGGTCACCGTTTTGGCAACATG 76
Query 58 CTACATTGATGCCTTCACCAGAAACGATTTTCCAGAGGATTTCCTCTTCGGAGCCGGTAC 117
||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||
Sbjct 77 CTACATTGATGCCTTCACCAGGAACGATTTTCCAGAGGATTTCCTCTTCGGAGCCGCCAC 136
Query 118 TTCTGCTTATCAGTGGGAAGGAG-CTGCTAATGAAGACGGAAGAACTCCTAGCGTCTGGG 176
|||||||| ||||||||||||| || | |||||||||||| |||||||||||||||||
Sbjct 137 CTCTGCTTACCAGTGGGAAGGAGCCT-TTGATGAAGACGGAAAAACTCCTAGCGTCTGGG 195
Query 177 ATACAACCTCCCACTGTTATAATGGAAG-TAATGGAGATATAGCATGTGATGGGTATCAC 235
||||||||||||||||| ||||||| || |||||||||||||||| ||||||||||||||
Sbjct 196 ATACAACCTCCCACTGTGATAATGG-AGATAATGGAGATATAGCAAGTGATGGGTATCAC 254
Query 236 AAATACAAGGAAGATGTTAAGTTGATGGCAGAAATGGGCTTAGAATCATTCAGATTCTCT 295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 255 AAATACAAGGAAGATGTTAAGTTGATGGCAGAAATGGGCTTAGAATCATTCAGATTCTCT 314
Query 296 ATCTCCTGGTCAAGACTTATACCTAATGGAAGAGGACGCATTAACCCAAAAGGTTTATTG 355
||||||||||||||||||||||||||||||||||||| ||||||||| |||||| || ||
Sbjct 315 ATCTCCTGGTCAAGACTTATACCTAATGGAAGAGGACCCATTAACCCCAAAGGTCTACTG 374
Query 356 TTTTACAAGAATCTCATCAAAGAGCTACGAAGCCATGGAATCGAACCTCACGTTACACTT 415
||||||||||| ||||||||||| |||||| |||||||||||||||| ||||||||||||
Sbjct 375 TTTTACAAGAACCTCATCAAAGAACTACGAGGCCATGGAATCGAACCACACGTTACACTT 434
Query 416 TACCACTACGATCTTCCTCAGTCTCTTGAAGATGAGTATGGAGGATGGATCAACC-ACAA 474
|||||||| ||||||||||||||||||||||||||||| |||| |||||||||| | ||
Sbjct 435 TACCACTATGATCTTCCTCAGTCTCTTGAAGATGAGTACAGAGGCTGGATCAACCGA-AA 493
Query 475 AATCATAGAAGACTTTACAGCTTTTGCAGATGTATGCTTCAGAGAGTTTGGGGAGGATGT 534
||||||||||||||| || ||||||||||||||||||||||||||||||||||| |||||
Sbjct 494 AATCATAGAAGACTTCACTGCTTTTGCAGATGTATGCTTCAGAGAGTTTGGGGATGATGT 553
Query 535 GAAGTTATGGACTACAATCAACGAAGCTACAATCTTCGCCTTTGCTTTTTATGGC-AAAG 593
|||||||||||||||||||||||||||||| | |||||| ||| || ||||||| | |
Sbjct 554 GAAGTTATGGACTACAATCAACGAAGCTACTTTATTCGCCATTGGTTCTTATGGCGACGG 613
Query 594 ACGTTAGGTATGGAAATTG------TA-C---TA--C-A--GGAAATTATTGTATGGAAA 638
| | ||||||||| |||| || | || | | ||||||| ||||| |||||
Sbjct 614 A-ATGAGGTATGGACATTGTCCTCCTATCAATTACTCTACCGGAAATTCTTGTACGGAAA 672
Query 639 CATATATTGCAGGCCATAACATGTTGCTAGCTCATGCCTCTGCTTCAAATTTGTATAAAC 698
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 673 CATATATTGCAGGCCATAACATGTTGCTAGCTCACGCCTCTGCTTCAAATTTGTATAAGC 732
Query 699 TAAAGTACAAGAGTAAGCAAAGAGGATCCATAGGCCTTAGTATATTTGCAT-TGGGGTTA 757
| |||||||||| |||||||||||||||| | ||||||||||||| ||||| | ||||||
Sbjct 733 TCAAGTACAAGACTAAGCAAAGAGGATCCGTGGGCCTTAGTATATATGCATAT-GGGTTA 791
Query 758 -ACTCCTTATACAAACTCCAAGGACGATGAAATCGCAACTCAAAGAGCTAAAGCTTTCCT 816
| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 792 TA-TCCTTATACAAACTCCAAGGACGATGAAATCGCAACTCAAAGAGCTGAAGCTTTCCT 850
Query 817 CTATGGATGGATGTTGAAGCCTTTGGTATTTGGGGACTATCCGGATGA-AATGAAGAGAA 875
|| ||| ||||||||||||||||||||||||||||||||||||||| | ||||||||| |
Sbjct 851 CTTTGGCTGGATGTTGAAGCCTTTGGTATTTGGGGACTATCCGGAT-ATAATGAAGAGGA 909
Query 876 CCTTGGGATCGAGATTACCGGTTTTCTCAGAGGAAGAATCAGAGCAAGTTAAAGGATCAT 935
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 910 CCTTGGGATCGAGATTACCGGTTTTCTCAGAGGAAGAGTCAGAGCAAGTGAAAGGATCAT 969
Query 936 CTGACTTTGTAGGAATTATACATTACA-CGACAGTT-TATGTCACAAACCAGCCC-GCAC 992
|||||||||||||| |||| || |||| | ||| || ||||||||||||| | || ||||
Sbjct 970 CTGACTTTGTAGGAGTTATTCACTACAAC-ACA-TTCTATGTCACAAACC-GACCTGCAC 1026
Query 993 CTTATATCTTTCCCAGCAGCACTAACAAAGACTTCTTTACAGACATGGGCGCGTATATTA 1052
||| | || || |||||| |||| || ||||||||||||||| ||||| | | | |
Sbjct 1027 CTTCTCTCGTTACCAGCAT---TAACGAACTCTTCTTTACAGACATTGGCGCATCTCTGA 1083
Query 1053 TCTCCACTGGGAACT-CTTCA-TCATTCGTGTTTGATGCTGTTCCATGGGGTCTGGAAGG 1110
| |||||||||| | ||||| | ||||| |||||||||| |||||||||||||||||||
Sbjct 1084 TAGCCACTGGGAA-TGCTTCACT-ATTCGAGTTTGATGCTATTCCATGGGGTCTGGAAGG 1141
Query 1111 TGTTCTTCAGCATATAAAGCATCGCTATAACAATCCTCCAATCTACATTCTTGAAAATGG 1170
| |||| ||||| ||||||| |||||||||||||||||||||||||||||||||| ||
Sbjct 1142 TATTCTGGAGCATCTAAAGCAGAGCTATAACAATCCTCCAATCTACATTCTTGAAAACGG 1201
Query 1171 TTCA-CCGATGAAACACGATTCGATGCTACAAGACACACCAAGAGTTGAATACATTCAAG 1229
| | ||||||||||| | ||| | |||||||||||||||||||||||||| ||||||||
Sbjct 1202 TA-AGCCGATGAAACATGGTTCAACGCTACAAGACACACCAAGAGTTGAATTCATTCAAG 1260
Query 1230 CTTACATTGGTGCTGTCCTCAACGCTATCAAGAGTGGATCGGACACGAGAGGTTACTTCG 1289
|||||||||||||||| |||||||| ||||||| |||||||||||||||||||||||| |
Sbjct 1261 CTTACATTGGTGCTGTGCTCAACGCCATCAAGAATGGATCGGACACGAGAGGTTACTTTG 1320
Query 1290 TATGGTCGCTGATAGATTTGTTTGAGGTAC-AGGTTGGATATAAAAGCAGCT-TCGGAAT 1347
|||||||| || | ||||||| |||| || |||| ||||||| | ||||| | |||||
Sbjct 1321 TATGGTCGATGGTTGATTTGTATGAGTTAATAGGT-GGATATATGACCAGCTAT-GGAAT 1378
Query 1348 GTACTATGTCAATTTTAGCGATCCTGGTCGCAAGAGGTCGCCAAAGCTCTCTGCTTCTTG 1407
||||||||| ||||| |||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 1379 GTACTATGTGAATTTCAGCGATCCCGGTCGCAAGAGGTCTCCAAAGCTCTCTGCTTCTTG 1438
Query 1408 GTACACTGGTTTTCTCAATGGTACAATTGATGTTGCTTCTCAAGATA-TGACTCAGTTGC 1466
|||| |||||||||||||||||||||||||||||||||||||||||| | | ||||||||
Sbjct 1439 GTACTCTGGTTTTCTCAATGGTACAATTGATGTTGCTTCTCAAGATACT-ATTCAGTTGC 1497
Query 1467 AGAGAAATTTCTCTGGCTCTTCTTCACTGTAATGT-TATAATATTAACG-ATTCTGGT 1522
||| ||| ||||||||||||||||| |||||||| | ||| | ||| | || |||||
Sbjct 1498 AGACAAAATTCTCTGGCTCTTCTTCGTTGTAATGTATTTAAAACTAAAGCATCCTGGT 1555
> Ahg491999 jgi|Araly1|491999|fgenesh2_kg.7__1432__AT4G27830.1
Length=1573
Score = 1724 bits (933), Expect = 0.0
Identities = 1343/1536 (87%), Gaps = 48/1536 (3%)
Strand=Plus/Plus
Query 2 AAAATGAAACATTTCAATCT-GTTATCCATTATT-CTGGTTATCGTTTTGGCGACAAGCT 59
||||||||||||||| ||| || | |||| || ||||| ||| | ||||| |||||||
Sbjct 9 AAAATGAAACATTTCTCTCTACTT-TTCATT-TTGCTGGTCATCCTCTTGGCAACAAGCT 66
Query 60 ACATTGATGCCTTCACCAGAAACGATTTTCCAGAGGATTTCCTCTTCGGAGCCGGTACTT 119
||| ||||||||| ||||||||| |||||||| ||||||||||||||||||||| ||||
Sbjct 67 ACAGTGATGCCTTTACCAGAAACAATTTTCCAAAGGATTTCCTCTTCGGAGCCGCCACTT 126
Query 120 CTGCTTATCAGTGGGAAGGAGCTGCTAATGAAGACGGAAGAACTCCTAGCGTCTGGGATA 179
|||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 127 CTGCTTATCAGTGGGAAGGAGCTGTTGATGAAGACGGAAGAACTCCTAGCGTCTGGGATA 186
Query 180 CAACCTCCCACTGTTATAATGGAAGTAATGGAGATATAGCATGTGATGGGTATCACAAAT 239
| ||| |||| ||| ||| || |||||||||||||| ||| ||||||||||||||||
Sbjct 187 CTTTCTCACACTCTTACAATAGAGGTAATGGAGATATAACATCAGATGGGTATCACAAAT 246
Query 240 ACAAGGAAGATGTTAAGTTGATGGCAGAAATGGGCTTAGAATCATTCAGATTCTCTATCT 299
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 247 ACAAGGAAGATGTTAAGCTGATGGCAGAAATGGGCTTAGAATCATTCAGATTCTCTATCT 306
Query 300 CCTGGTCAAGACTTATACCTAATGGAAGAGGACGCATTAACCCAAAAGGTTTATTGTTTT 359
||||||||||||| ||||||||||||||||||| | |||||||||||||| |||||||||
Sbjct 307 CCTGGTCAAGACTAATACCTAATGGAAGAGGACTCGTTAACCCAAAAGGTCTATTGTTTT 366
Query 360 ACAAGAATCTCATCAAAGAGCTACGAAGCCATGGAATCGAACCTCACGTTACACTTTACC 419
||||||| ||||||||||| ||| || |||||||||| |||| ||||||||||||||||
Sbjct 367 ACAAGAACCTCATCAAAGAACTAAAAACCCATGGAATCAAACCACACGTTACACTTTACC 426
Query 420 ACTACGATCTTCCTCAGTCTCTTGAAGATGAGTATGGAGGATGGATCAACCACAAAATCA 479
|||| ||||||||||||| ||||||||| ||||| |||||||||||||||| ||||||||
Sbjct 427 ACTATGATCTTCCTCAGTGTCTTGAAGACGAGTACGGAGGATGGATCAACCGCAAAATCA 486
Query 480 TAGAAGACTTTACAGCTTTTGCAGATGTATGCTTCAGAGAGTTTGGGGAGGATGTGAAGT 539
|||||||||| || ||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 487 TAGAAGACTTCACTGCTTTTGCAGATGCATGCTTCAGAGAGTTTGGGGAGGATGTGAAGT 546
Query 540 TATGGACTACAATCAACGAAGCTACAATCTTCGCCTTTGCTTTTTATGGCAAAG-ACGT- 597
|||||||||| || |||||||||||||| |||||| ||| || ||||| | ||| | |
Sbjct 547 TATGGACTACCATAAACGAAGCTACAATTTTCGCCATTGGTTCTTATGACCAAGGAA-TC 605
Query 598 TAG--GTATGGAAATTGTACTAC-AGGAAATT-AT---T-GTA-T---GGAAA--CAT-- 641
| | | |||| ||||| || | | ||||| || | ||| | ||||| | |
Sbjct 606 TCGCCGCCTGGACATTGTTCTCCTAACAAATTCATCAATTGTACTACTGGAAATTCTTCT 665
Query 642 A--------TAT-T-GCAGGCCATAACATGTTGCTAGCTCATGCCTCTGCTTCAAATTTG 691
| ||| | |||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 666 ACAGAACCATATCTTGCAGGCCATAACATATTGCTAGCTCATGCCTCTGCTTCAAAATTG 725
Query 692 TATAAACTAAAGTACAAGAGTAAGCAAAGAGGATCCATAGGCCTTAGTATATTTGCATTG 751
|||||||||||||||||||||||||| ||||||||| |||| |||||||||||||||||
Sbjct 726 TATAAACTAAAGTACAAGAGTAAGCAGAGAGGATCCTTAGGGCTTAGTATATTTGCATTC 785
Query 752 GGGTTAACTCCTTATACAAACTCCAAGGACGATGAAATCGCAACTCAAAGAGCTAAAGCT 811
|||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 786 GGGTTATCTCCCTATACAAACTCCAAGGACGATGAAATCGCAACTCAAAGAGCTAAAGCT 845
Query 812 TTCCTCTATGGATGGATGTTGAAGCCTTTGGTATTTGGGGACTATCCGGATGAAATGAAG 871
||| ||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 846 TTCTTCTATGGCTGGATGTTGAAGCCTTTGGTATTTGGAGACTATCCGGATGAAATGAAG 905
Query 872 AGAACCTTGGGATCGAGATTACCGGTTTTCTCAGAGGAAGAATCAGAGCAAGTTAAAGGA 931
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 906 AGAACCTTGGGATCGAGATTACCGGTGTTCTCAGAGGAAGAGTCAGAGCAAGTTAAAGGA 965
Query 932 TCATCTGACTTTGTAGGAATTATACATTACACGACAGTT-TATGTCACAAACCAGCCCGC 990
|||| ||||||| |||||||||| || ||||| ||| || |||||||||||||| ||| |
Sbjct 966 TCATATGACTTTATAGGAATTATTCACTACACAACA-TTATATGTCACAAACCAACCCTC 1024
Query 991 ACCTTATATCTTTCCCAGCA-GCACTAACAAAGACTTCTTTACAGACATGGGCGCGTATA 1049
|| || |||||||||||||| | | | | | | ||||| || ||||||||| | ||||
Sbjct 1025 ACGTTCTATCTTTCCCAGCATG-AGTGA-AG-G-CTTCTATAAAGACATGGGAGTATATA 1080
Query 1050 TTATCTCCACTGGGAACTCTTCATCATTCGTGTTTG--ATGCTGTTCCATGGGGTCTGGA 1107
| || ||| ||||||| ||||||| ||| || || | ||| |||||||||||| ||
Sbjct 1081 TGATTTCCGCTGGGAATTCTTCAT--TTCTTGCGTGGGAGGCTACTCCATGGGGTCTTGA 1138
Query 1108 AGGTGTTCTTCAGCATATAAAGCATCGCTATAACAATCCTCCAATCTACATTCTTGAAAA 1167
|||| ||||| || |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1139 AGGTATTCTTGAGTATATAAAGCAGAGCTATAACAATCCTCCAATCTACATTCTTGAAAA 1198
Query 1168 TGGT-TCACCGATGAAACACGATTCGATGCTACAAGACACACCAAGAGTTGAATACATTC 1226
|||| | |||||| ||| || ||||| ||||||||||||| |||| |||||| |||||
Sbjct 1199 TGGTATG-CCGATGGAACGCGTTTCGACACTACAAGACACACAAAGAATTGAATTCATTC 1257
Query 1227 AAGCTTACATTGGTGCTGTCCTCAACGCTATCAAGAGTGGATCGGACACGAGAGGTTACT 1286
||||||||||||||||||| |||||||| ||||||| |||||||||||||||||||||||
Sbjct 1258 AAGCTTACATTGGTGCTGTGCTCAACGCCATCAAGAATGGATCGGACACGAGAGGTTACT 1317
Query 1287 TCGTATGGTCGCTGATAGATTTGTTTGAGGTACAGGTTGGATATAAAAGCAGCTTCGGAA 1346
| ||||||||| |||| ||||||| ||| || | |||||||| | |||||||||||
Sbjct 1318 TTGTATGGTCGATGATTGATTTGTATGAATTATTGACTGGATATACGACCAGCTTCGGAA 1377
Query 1347 TGTACTATGTCAATTTTAGCGATCCTGGTCGCAAGAGGTCGCCAAAGCTCTCTGCTTCTT 1406
|||||||||| ||||| ||||||||||||||||||||| | |||||||||||||||||||
Sbjct 1378 TGTACTATGTGAATTTCAGCGATCCTGGTCGCAAGAGGACTCCAAAGCTCTCTGCTTCTT 1437
Query 1407 GGTACACTGGTTTTCTCAATGGTACAATTGATGTTGCTTCTCAAGATA-TGACTCAGTTG 1465
||||||||||||||||||||||||||||||||||| |||||||||||| | | |||||||
Sbjct 1438 GGTACACTGGTTTTCTCAATGGTACAATTGATGTTTCTTCTCAAGATACT-ATTCAGTTG 1496
Query 1466 CAGAGAAATTTCTCTGGCTCTTCTTCACTGTAATGT 1501
||||| || |||||||||||||||||| ||||||||
Sbjct 1497 CAGAGCAACTTCTCTGGCTCTTCTTCATTGTAATGT 1532
> Ahg486774 jgi|Araly1|486774|fgenesh2_kg.5__2766__AT4G27830.1
Length=1279
Score = 1454 bits (787), Expect = 0.0
Identities = 1133/1293 (88%), Gaps = 52/1293 (4%)
Strand=Plus/Plus
Query 245 GAAGATGTTAAG-TTGATGGCAGAAATGGGCTTAGAATCATTCAGATTCTCTATCTCCTG 303
|||||||||||| || ||||| || ||||||||| || ||||||||||||| ||||||||
Sbjct 1 GAAGATGTTAAGCTT-ATGGCTGATATGGGCTTACAAGCATTCAGATTCTCCATCTCCTG 59
Query 304 GTCAAGACTTATACCTAATGGAAGAGGACGCATTAACCCAAAAGGTTTATTGTTTTACAA 363
| ||||||||||||||||||||||||| | |||||||||||||||| || ||||||||||
Sbjct 60 GACAAGACTTATACCTAATGGAAGAGGCCCCATTAACCCAAAAGGTCTACTGTTTTACAA 119
Query 364 GAATCTCATCAAAGAGCTACGAAGCCATGGAATCGAACCTCACGTTACACTTTACCACTA 423
||| ||||||||||| |||||| |||||||||||||||| ||||||||||||||||||||
Sbjct 120 GAACCTCATCAAAGAACTACGAGGCCATGGAATCGAACCACACGTTACACTTTACCACTA 179
Query 424 CGATCTTCCTCAGTCTCTTGAAGATGAGTATGGAGGATGGATCAACC-ACAAAATCATAG 482
||||||||||||||||| ||||||||||| |||||||||||||||| | ||||||||||
Sbjct 180 TGATCTTCCTCAGTCTCTAGAAGATGAGTACGGAGGATGGATCAACCGA-AAAATCATAG 238
Query 483 AAGACTTTACAGCTTTTGCAGATGTATGCTTCAGAGAGTTTGGGGAGGATGTGAAGTTAT 542
|||||||||| |||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 239 AAGACTTTACTGCTTTTGCAGATGTCTGCTTCAGAGAGTTTGGGGATGATGTGAAGTTAT 298
Query 543 GGACTACAATCAACGAAGCTACAATCTTCGCCTTTGCTTTTTATGGCAAAG-A--CGTTA 599
||||||||||||||||||||||||| || ||| |||||| ||||||| ||| | |||
Sbjct 299 GGACTACAATCAACGAAGCTACAATATTTGCCATTGCTTCTTATGGCGAAGGAGTCGTGC 358
Query 600 GGTATGGAAATTGTACTAC-AGGAAATT-AT---T-G-T--A-TGGAAA--CAT--A--- 642
| |||| |||||| | | | ||||| || | | | | |||||| | | |
Sbjct 359 CGCCTGGACATTGTAGTCCCAACAAATTCATCAATTGCTCTACTGGAAATTCTTCTACAG 418
Query 643 -----TAT-T-GCAGGCCATAACATGTTGCTAGCTCATGCCTCTGCTTCAAATTTGTATA 695
||| | ||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 419 AACCATATCTTGCAGGGCATAACATGTTGCTAGCTCATGCCTCTGCTTCAAAATTGTATA 478
Query 696 AACTAAAGTACAAGAGTAAGCAAAGAGGATCCATAGGCCTTAGTATATTTGCATTGGGGT 755
|||||||||||||| ||| ||| |||||||||||||||||||||||||||||||| || |
Sbjct 479 AACTAAAGTACAAGCGTATGCAGAGAGGATCCATAGGCCTTAGTATATTTGCATTCGGCT 538
Query 756 TAACTCCTTATACAAACTCCAAGGACGATGAAATCGCAACTCAAAGAGCTAAAGCTTTCC 815
|| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 TATCTCCTTACACAAACTCCAAGGACGATGAAATCGCAACTCAAAGAGCTAAAGCTTTCC 598
Query 816 TCTATGGATGGATGTTGAAGCCTTTGGTATTTGGGGACTATCCGGATGAAATGAAGAGAA 875
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 599 TCTATGGATGGATGTTGAAGCCTTTGGTATTCGGGGACTATCCGGATGAAATGAAAAGAA 658
Query 876 CCTTGGGATCGAGATTACCGGTTTTCTCAGAGGAAGAATCAGAGCAAGTTAAAGGATCAT 935
|||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 659 CCTTGGGATCGAGATTACCGGTTTTCTCGGAGGAAGAGTCAGAGCAAGTTAAAGGATCAT 718
Query 936 CTGACTTTGTAGGAATTATACATTACACGACAGTTTATGTCACAAACC-AGCCCGCACCT 994
||||||||||||||||||| || ||||| ||| ||||||||||||| | |||| || ||
Sbjct 719 CTGACTTTGTAGGAATTATTCACTACACAACATTTTATGTCACAAATCGAGCCT-CAGCT 777
Query 995 T-ATATCTTTCCCAGCA-GCACTAACAAAGACTTCTTTACAGACATGGGCGCGTATATTA 1052
| | |||||||||| || | || ||| | |||||||| ||||||||||| ||||| |
Sbjct 778 TCA-ATCTTTCCCATCATGAAC---CAAGG-CTTCTTTAAAGACATGGGCGTATATATGA 832
Query 1053 TCTCCACTGGGAACTCTTCATCATTCGTGTTTG--ATGCTGTTCCATGGGGTCTGGAAGG 1110
| || ||||||| ||||||| ||| ||| || | ||| |||||||||||| |||||
Sbjct 833 TTTCTGCTGGGAATTCTTCAT--TTCATGTGTGGGAGGCTACTCCATGGGGTCTTGAAGG 890
Query 1111 TGTTCTTCAGCATATAAAGCATCGCTATAACAATCCTCCAATCTACATTCTTGAAAATGG 1170
||||||| ||||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 891 TGTTCTTGAGCATCTAAAGCAAAGCTATAACAATCCTCCAATCTACATTCTTGAAAATGG 950
Query 1171 TTCA-CCGATGAAACACGATTCGATGCTACAAGACACACCAAGAGTTGAATACATTCAAG 1229
| | |||||| ||| || ||||||||||||||||| |||||||||||||||||||||||
Sbjct 951 TA-AGCCGATGGAACGCGTTTCGATGCTACAAGACATACCAAGAGTTGAATACATTCAAG 1009
Query 1230 -CTTACATTGGTGCTGTCCTCAACGCTATCAAGAGTGGATCGGACACGAGAGGTTACTTC 1288
|| ||||||||||||| |||||||| ||||||| |||||||||||||||| ||||||||
Sbjct 1010 GCT-ACATTGGTGCTGTGCTCAACGCCATCAAGAATGGATCGGACACGAGAAGTTACTTC 1068
Query 1289 GTATGGTCGCTGATAGATTTGTTTGAGGTACAG-GTTGGATATAAAAGCAGCTTCGGAAT 1347
||||||||| |||| ||| ||| |||| || | || ||||||| | ||||||||||||
Sbjct 1069 GTATGGTCGATGATTGATGTGTATGAGTTATTGAGT-GGATATACGACCAGCTTCGGAAT 1127
Query 1348 GTACTATGTCAATTTTAGCGATCCTGGTCGCAAGAGGTCGCCAAAGCTCTCTGCTTCTTG 1407
||| ||||| ||||| ||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 1128 GTATTATGTGAATTTCAGCGATCCTGGTCGCAAGAGGTCTCCAAAACTCTCTGCTTCTTG 1187
Query 1408 GTACACTGGTTTTCTCAATGGTACAATTGATGTTGCTTCTCAAGATA-TGACTCAGTTGC 1466
||| |||||||||||||||||||||||||||||| ||||||||||| | ||||||||||
Sbjct 1188 GTATTCTGGTTTTCTCAATGGTACAATTGATGTTGTTTCTCAAGATAGT-ACTCAGTTGC 1246
Query 1467 AGAGAAATTTCTCTGGCTCTTCTTCACTGTAAT 1499
|||| || ||||||| |||||||||| ||||||
Sbjct 1247 AGAGCAACTTCTCTGCCTCTTCTTCATTGTAAT 1279
> Ahg326101 jgi|Araly1|326101|fgenesh1_pm.C_scaffold_6001321
Length=1512
Score = 340 bits (184), Expect = 1e-92
Identities = 373/461 (81%), Gaps = 26/461 (6%)
Strand=Plus/Plus
Query 116 ACTTCTGCTTATCAGTGGGAAGGAGCTGCTAATGAAGACGG-AAGAACTCCTAGCGTCTG 174
|||||||||||||||||||||||||||| | ||||||| || || || |||||||| ||
Sbjct 115 ACTTCTGCTTATCAGTGGGAAGGAGCTGTTGATGAAGATGGGAAAAAG-CCTAGCGTTTG 173
Query 175 GGATACAA-CCTCCCACTGTTATAA-TGGAAG-TAATGGAGATATAGCATGTGATGGGTA 231
|||||| ||| | ||| | ||| | | | ||| ||||| ||||| |||||||||||
Sbjct 174 GGATACTTTCCTTC-ACTCTCGTAACTT-A-GCTAACGGAGACATAGCTTGTGATGGGTA 230
Query 232 TCACAAATACAAGGAAGATGTTAAGTTGATGGCAGAAA-TGGGCTTAGAAT-CATTCAGA 289
|||||||||||||||||||| || | |||| |||| ||| |||||| | |||||||
Sbjct 231 CCACAAATACAAGGAAGATGTGAAACTAATGGTGGAAACTGG-CTTAGA-TGCATTCAGG 288
Query 290 TTCTCTATCTCCTGGTCAAGACTTATACCTAATGGAAGAGGACGCA-TTAACCCAAAAGG 348
||||||||||| ||||| || |||||||| ||||||||||| | | |||||||||||||
Sbjct 289 TTCTCTATCTCTTGGTCTAGGCTTATACCAAATGGAAGAGGTC-CTGTTAACCCAAAAGG 347
Query 349 TTTATTGTTTTACAAGAATCT-CAT-CAA-AGAGCTACGA-AGCCATGGAATCGAACCTC 404
| || || |||||||| || ||| ||| | | || | || ||||||||||||| |
Sbjct 348 TCTACAATTCTACAAGAA-CTTCATTCAACA-A-CTT-GTCAGTAATGGAATCGAACCAC 403
Query 405 ACGTTACACTTT-ACCACTACGATCTTCCTCAGTCTCTTGAAGATGAGTATGGAGGATGG 463
| |||||| || ||||||||||||||||||||| ||| || ||||| ||||||||||||
Sbjct 404 ATGTTACA-TTGCACCACTACGATCTTCCTCAGTATCTCGAGGATGACTATGGAGGATGG 462
Query 464 ATCAACCACAAAATCAT-AGAAGACTTTACAGCTTTTGCAGATGTATGCTTCAGAGAGTT 522
||||||| || |||||| | ||||||||||||||| ||||||||| || ||| |||||||
Sbjct 463 ATCAACCGCAGAATCATCA-AAGACTTTACAGCTTATGCAGATGTTTGTTTCGGAGAGTT 521
Query 523 TGGGGAGGATGTGAAGTTATGGACTACAATCAACGAAGCTA 563
|||| | | || || || ||||| || |||||||| ||||
Sbjct 522 TGGGAACCACGTCAAATTCTGGACCACGATCAACGAGGCTA 562
> Ahg315321 jgi|Araly1|315321|fgenesh1_pm.C_scaffold_2000354
Length=1539
Score = 237 bits (128), Expect = 2e-61
Identities = 377/492 (77%), Gaps = 37/492 (8%)
Strand=Plus/Plus
Query 83 GATTTTCCAGA-GGATTTCCTCTTCGGAGCCGGTACTTCTGCTTATCAGTGGGAAGGAGC 141
|||||||| || ||| ||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct 82 GATTTTCCCGAGGGA-TTCGTCTTCGGAGCCGGCACTTCTGCTTATCAGTGGGAAGGAGC 140
Query 142 TGCTAATGAAGACGGAAG-AACTCCTAGCGTCTGGGATACAACCTCC-CACTGTTATAAT 199
||||| ||||||||||| || |||||||| ||||| || | | |||| | |||
Sbjct 141 TGCTACGGAAGACGGAAGGAAA-CCTAGCGTGTGGGACACG-CTTTGTCACTCTCGTAAC 198
Query 200 GGAAG-TAATGGAGATATAGCATGTGATGGGTATCACAAATACAAGGAAGATGTTAAGTT 258
||| ||| ||||||||| ||||||||||||||||||| |||||||||||||| |||||
Sbjct 199 C-AAGGTAACGGAGATATAACATGTGATGGGTATCACAAGTACAAGGAAGATGTGAAGTT 257
Query 259 GATGGCAGAAA-TGGGCTTAGAAT-CATTCAGATTCTCTATCTCCTGGTCAAGACTTATA 316
||||| || | | |||||| | | || |||||||| ||||| ||||| || || |||
Sbjct 258 GATGGTGGACACTAA-CTTAGA-TGCGTTTAGATTCTCCATCTCTTGGTCTAGGCTAATA 315
Query 317 CCTAATGGAAGAGGACGCATTAACC-CAAAAGGTTTATTGTTTTACAAGAATCTCATCAA 375
|||| | || || | |||| || | || | ||| | | | ||| |
Sbjct 316 CCTAGTAAAATTTTACA-AG-AACCTCA-----TCTAA-GAATTAGTA-A--CGCATGTA 364
Query 376 AGAGCT-ACGAAGCCATGGAA-TCGAACC-TCACGTTACACTTTACCACTACGATCTTCC 432
| | || || | | | |||| | ||||| | | |||||||| ||||||||||||| |||
Sbjct 365 A-A-CTTACTA--C-A-GGAAAT-GAACCAT-ATGTTACACTATACCACTACGATCATCC 416
Query 433 TCAGTCTCTTGAAGATGAGTATGGAGGATGGATCAACCACAAAATCAT-AGAAGACTTTA 491
||||| |||||| ||||| |||||||||||| |||||| | ||| || | |||||||||
Sbjct 417 TCAGTATCTTGAGGATGAATATGGAGGATGGCTCAACCGCCGAATGATCA-AAGACTTTA 475
Query 492 CAGCTTTTGCAGATGTATGCTTCAGAGAGTTTGGGGAGGATGTGAAGTTATGGACTACAA 551
| |||| ||||||||| ||||| ||||||||||| | | || || || ||||| || |
Sbjct 476 CTGCTTATGCAGATGTTTGCTTTAGAGAGTTTGGAAACCACGTCAAATTCTGGACAACGA 535
Query 552 TCAACGAAGCTA 563
||||||| ||||
Sbjct 536 TCAACGAGGCTA 547
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61591926165
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5