BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G62760.1
Length=660
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486776 jgi|Araly1|486776|fgenesh2_kg.5__2768__AT3G62760.1 1031 0.0
> Ahg486776 jgi|Araly1|486776|fgenesh2_kg.5__2768__AT3G62760.1
Length=654
Score = 1031 bits (558), Expect = 0.0
Identities = 622/654 (95%), Gaps = 0/654 (0%)
Strand=Plus/Plus
Query 7 ATGAAGCTATATGGAGATGAGATGTCAGCGTGCGTGGCACGTGTTCTTCTCTGCCTTCAT 66
|||||| |||||||||||||||||||||||| |||||||||||||||||||||||| |||
Sbjct 1 ATGAAGGTATATGGAGATGAGATGTCAGCGTCCGTGGCACGTGTTCTTCTCTGCCTCCAT 60
Query 67 GAGAAGAACACTGAGTTCGAGCTTGTCCCTGTCAATCTCTTTGCTTGCCACCACAAGCTC 126
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GAGAAGAACACCGAGTTCGAGCTTGTCCCTGTCAATCTCTTTGCTTGCCACCACAAGCTC 120
Query 127 CCTTCTTTTCTCTCCATGAACCCCTTTGGCAAAGTTCCAGCTCTACAAGATGACGATCTT 186
|||||||||||||||||||||||||||||| ||||||||||||||||||| || ||||||
Sbjct 121 CCTTCTTTTCTCTCCATGAACCCCTTTGGCCAAGTTCCAGCTCTACAAGACGATGATCTT 180
Query 187 ACCCTTTTTGAGTCGAGGGCAATCACTGCATATATAGCAGAGAAGCATAGAGACAAAGGA 246
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 181 ACTCTTTTTGAGTCGAGGGCAATCACTGCATATATAGCAGAGAAACATAGAGACAAAGGA 240
Query 247 ACGGATTTGACAAGACACGAAGACCCTAAAGAAGCAGCGATTGTGAAGTTATGGTCGGAA 306
|||||| |||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 241 ACGGATGTGACAAGACACGAAAACTCTAAAGAAGCAGCGATTGTGAAGTTATGGTCGGAA 300
Query 307 GTGGAGGCTCACCACTTCAACCCTGCGATCTCCGCCGTCATCCACCAGCTCATCGTCGTG 366
||||||||||||||||||||||| ||||| | ||||||||||||||||||||| || |||
Sbjct 301 GTGGAGGCTCACCACTTCAACCCGGCGATATTCGCCGTCATCCACCAGCTCATTGTGGTG 360
Query 367 CCGCTTCAAGGTGAGTCTCCTAATGCAGCCATCGTGGAGGAGAATCTGGAGAATCTAGGG 426
||||||||||| || |||||| ||||||||||||| ||| ||||||||||||| |||| |
Sbjct 361 CCGCTTCAAGGCGAATCTCCTGATGCAGCCATCGTAGAGAAGAATCTGGAGAAGCTAGAG 420
Query 427 AAAATACTTGACGTGTACGAAGAGAGACTTGGGAAGACAAAATACTTAGCCGGAGATACT 486
||| | || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 AAAGTGCTCGACGTGTACGAAGAGAGACTTGGGAAGACAAAATACTTAGCCGGAGATACT 480
Query 487 TACACACTCGCCGATCTCCACCACGTGCCTTACACTTACTACTTCATGAAGACGATTCAT 546
||||||||||| |||||||||||||| || ||||||||||||||||||||||||| ||||
Sbjct 481 TACACACTCGCAGATCTCCACCACGTTCCGTACACTTACTACTTCATGAAGACGAGTCAT 540
Query 547 GCCGGTTTGATCAACGACCGTCCTAATGTCAAGGCGTGGTGGGAAGATCTCTGTTCTCGT 606
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 GCCGGTTTGATCAACGACCGTCCTAATGTCAAGGCGTGGTGGGAAGATCTCTGTTCTCGT 600
Query 607 CCGGCTTTCCTTAAAGTCTCTCCAGGCTTGACCGTTGCTCCCACCACAAATTGA 660
||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 601 CCGGCTTTCCTTAAAGTCTCTCCTGGCTTGACCGTTGCTCCCACCACAAATTGA 654
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24208052295
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5