BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G62770.1
Length=1625
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486779 jgi|Araly1|486779|fgenesh2_kg.5__2771__AT3G62770.2 2263 0.0
> Ahg486779 jgi|Araly1|486779|fgenesh2_kg.5__2771__AT3G62770.2
Length=1521
Score = 2263 bits (1225), Expect = 0.0
Identities = 1417/1503 (94%), Gaps = 40/1503 (3%)
Strand=Plus/Plus
Query 10 GGCAACAAGCAAAGCACGAAGTCA---tcttcttcctatttcttctattcctccttctcc 66
|||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct 1 GGCAACAAGCAAAGCACGAAGTCATCTTCTTCTTCCTATTTC-TCTATTCCTCCTTCTCC 59
Query 67 acgcttcttcttcttcttcctcaatctctcttacgattccttc-aaatcattcttccATG 125
||||||||||||||||||||||||||||||||||||||||||| || || ||||||||||
Sbjct 60 ACGCTTCTTCTTCTTCTTCCTCAATCTCTCTTACGATTCCTTCGAATTCCTTCTTCCATG 119
Query 126 GCCACCGTATCTTCTTCCTCCTGGCCAAACCCCAACCCTAATCCCGATTCCACGTCTGCC 185
|||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 120 GCCACCGTCTCTTCTTCCTCCTGGCCAAACCCCAACCCTAATCCCGATCCCACGTCTGCC 179
Query 186 TCAGATTCCGATTCTACTTTTCCCTCTCACCGCGATCGCGTAGACGAACCCGACTCTCTC 245
|||||||||||||||||||||||||||||||||| ||||| ||||||| |||||||||||
Sbjct 180 TCAGATTCCGATTCTACTTTTCCCTCTCACCGCGTTCGCGGAGACGAAACCGACTCTCTC 239
Query 246 GATTCCTTCTCCTCCATGAGTCTTAACTCCGACGAACCTAATCAG-ACTTCTAATCAATC 304
||||||||||||||||||||||| ||||||||||| ||||||||| || |||||||||||
Sbjct 240 GATTCCTTCTCCTCCATGAGTCTCAACTCCGACGAGCCTAATCAGAAC-TCTAATCAATC 298
Query 305 GCCTCTTTCTCCCCCTACGCCCAATTTACCGGTGATGCCTCCTCCGTCCGTGCTTCATCT 364
|||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 299 GCCTATTTCTCCCCCTACGCCCAATTTACCGGTGACGCCTCCTCCGTCCGTGCTTCATCT 358
Query 365 TTCCTTTAACCAAGATCATGCTTGCTTCGCTGTCGGCACTGACCGTGGCTTCCGGATCCT 424
|||||||||||| || |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 359 TTCCTTTAACCAGGACCATGCTTGCTTCGCTGTCGGCACTGATCGTGGCTTCCGGATCCT 418
Query 425 TAATTGCGATCCCTTTCGCGAGATTTTCCGGCGTGATTTCGATCGTGGCGGTGGTGTTGC 484
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 TAATTGCGATCCGTTTCGCGAGATTTTCCGGCGTGATTTCGATCGTGGCGGTGGTGTTGC 478
Query 485 AGTCGTGGAGATGCTTTTCAGATGCAATATATTAGCCCTAGTTGGTGGCGGACCTGATCC 544
|| |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 479 TGTGGTGGAGATGCTTTTCAGATGCAATATATTAGCCCTAGTGGGTGGTGGACCTGATCC 538
Query 545 TCAATATCCTCCTAATAAGGTTATGATTTGGGATGATCACCAGGGCCGATGTATCGGAGA 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 TCAATATCCTCCTAATAAGGTTATGATTTGGGATGATCACCAGGGCCGATGTATCGGAGA 598
Query 605 ACTCTCTTTCAGGTCCGATGTTAGATCCGTCCGGCTTAGGAGGGATCGGATTATTGTCGT 664
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 599 GCTCTCTTTCAGGTCCGATGTTAGATCGGTCCGGCTTAGGAGGGATCGGATTATTGTCGT 658
Query 665 TCTTGAGCAGAAGATTTTTGTCTACAATTTCTCTGACCTCAAGCTGATGCATCAGATTGA 724
||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 659 TCTGGAGCAGAAGATTTTTGTGTACAATTTCTCCGACCTCAAGCTGATGCATCAGATTGA 718
Query 725 AACCATTGCCAACCCTAAGGGTTTGTGTGCTGTTTCTCAGGGTGTTGGTTCTATGGTTTT 784
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 719 GACCATTGCGAACCCTAAGGGTTTGTGTGCTGTTTCTCAGGGTGTTGGTTCTATGGTATT 778
Query 785 GGTATGTCCAGGTTTGCAGAAAGGTCAAGTTCGGATCGAGCACTACGCTTCTAAACGGAC 844
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 GGTATGTCCAGGTTTGCAGAAAGGTCAAGTTCGGATCGAGCACTACGCTTCTAAACGGAC 838
Query 845 CAAATTCGTCATGGCTCATGATTCCAGAATAGCTTGCTTCGCTCTCACGCAGGATGGCCA 904
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 839 CAAATTCGTCATGGCTCATGATTCGAGAATAGCTTGCTTCGCTCTCACGCAGGATGGGCA 898
Query 905 TTTGTTGGCCACTGCTAGCTCTAAGGGTACTCTGGTTCGGATCTTCAATACTGTTGATGG 964
||||||||| || ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 899 TTTGTTGGCAACAGCTAGCTCTAAGGGTACTCTGGTTCGGGTCTTCAATACTGTTGATGG 958
Query 965 TACCTTGCGTCAAGAG-------GT-A----A-------GG--AGG-GG--TGCGGATAG 1000
|||||||| |||||| || | | || ||| || |||||||||
Sbjct 959 AACCTTGCGCCAAGAGTCCCACCGTGATGTGACTCTACAGGTTAGGAGGGGTGCGGATAG 1018
Query 1001 AGCAGAGATCTACAGTTTGGCCTTCTCTTCAAATGCTCAGTGGTTAGCTGTCTCAAGTGA 1060
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 AGCGGAGATCTACAGTTTGGCCTTCTCTTCAAATGCTCAGTGGTTAGCTGTCTCAAGTGA 1078
Query 1061 CAAAGGAACGGTCCATGTCTTTGGTCTCAAAGTCAACTCCGGATCTCAAGTGAAAGACTC 1120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1079 CAAAGGAACGGTCCATGTCTTTGGTCTCAAAGTCAACTCCGGATCTCAAGTGAAAGACTC 1138
Query 1121 ATCCCGAATTGCACCTGATGCTACTCCCTCATCCCCATCGTCGTCTCTGTCTTTATTCAA 1180
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1139 ATCCCGAATTGCACCTGATGCTACTCCCTCATCCCCATCGTCATCTCTGTCTTTATTCAA 1198
Query 1181 AGGAGTGTTACCGAGGTATTTCAGCTCGGAGTGGTCGGTGGCTCAGTTCAGGTTGGTTGA 1240
|| ||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1199 AG---TGTTACCAAAGTATTTCAGCTCGGAGTGGTCGGTGGCTCAGTTCAGGTTGGTTGA 1255
Query 1241 AGGAACTCAGTACATAGCCGCCTTTGGCCATCAAAAGAACACCGTTGTTATTCTTGGCAT 1300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1256 AGGAACTCAGTACATAGCCGCCTTTGGCCATCAAAAGAACACCGTTGTTATTCTTGGCAT 1315
Query 1301 GGATGGGAGCTTCTACAGATGCCAGTTTGATCCGGTGAACGGCGGTGAAATGTCTCAGCT 1360
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1316 GGACGGGAGCTTCTACAGATGCCAGTTTGATCCGGTGAACGGCGGAGAAATGTCTCAGCT 1375
Query 1361 TGAGTACCACAACTGTCTGAAACCGCCTTCAGTTTTCTAAAAGCTTTAC-TACTTATACT 1419
|||||||||||||||| |||||||||||||||||||||||||||| || ||||||| ||
Sbjct 1376 TGAGTACCACAACTGTTTGAAACCGCCTTCAGTTTTCTAAAAGCT--ACGTACTTATTCT 1433
Query 1420 CTTTTGTTCCTTCTCTCTCT-T-TATATCTCTCTGCAACTTAAGCGGTGAGATATGGTGT 1477
|||||||||||| ||||||| | | ||||||||||| |||||||||||||||| || |||
Sbjct 1434 CTTTTGTTCCTTATCTCTCTCTCTCTATCTCTCTGCTACTTAAGCGGTGAGATTTG-TGT 1492
Query 1478 ATA 1480
|||
Sbjct 1493 ATA 1495
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60906301755
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5