BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G62780.1
Length=1151
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486780 jgi|Araly1|486780|fgenesh2_kg.5__2772__AT3G62780.1 965 0.0
> Ahg486780 jgi|Araly1|486780|fgenesh2_kg.5__2772__AT3G62780.1
Length=966
Score = 965 bits (522), Expect = 0.0
Identities = 584/614 (95%), Gaps = 4/614 (1%)
Strand=Plus/Plus
Query 2 AGTCTTCTCTGCAACTCCTATATGTAATGTGTCTAGAGAGAACCAGCTTTTTCATTGGGT 61
||||||||||||||||||||||||||||| |||||||||||| |||||||| ||||||||
Sbjct 1 AGTCTTCTCTGCAACTCCTATATGTAATGCGTCTAGAGAGAAGCAGCTTTTGCATTGGGT 60
Query 62 AATATCAAAATGGGGACGAGATCTCTAGAAATAAATGTGACATCAGCAAAAGGGCTTAAG 121
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 61 AATATCAAAATGGGGACGAGATCTCTAGAAATAAAGGTGACATCAGCAAAAGGGCTTAAG 120
Query 122 AAAGTGTCGAAGATGGATGTTTTTGTGGCCGTGAAGTTATCCGGTGATCCAAAATGCTCT 181
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AAAGTGTCCAAGATGGATGTTTTTGTGGCCGTGAAGTTATCCGGTGATCCAAAATGCTCT 180
Query 182 GACCACCGTGAGCAGCGGACACAAGCGGCAAGAGACGGTGGAACCAGCCCCAAATGGAGC 241
||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||
Sbjct 181 GACCACCGTGAGCAGCGGACACAAGTGGCAAGAGACGGTGGAACTAGCCCCAAATGGAGC 240
Query 242 AATGATGTCATGAAGTTCATCC-TCGACCAAAACTTAGCAGAGGCTAACCGCCTTGTGAT 300
|||||||||||||| |||| || | ||||||| |||||| || |||||||||||||||||
Sbjct 241 AATGATGTCATGAAATTCA-CCATTGACCAAACCTTAGCTGAAGCTAACCGCCTTGTGAT 299
Query 301 CACTTTCAAGATCAAGTGCGAGCAACGTGGAGGAGTAGATAAAGACATCGGCGAGGTTCA 360
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 CACTTTCAATATCAAGTGCGAGCAACGTGGAGGAGTAGATAAAGACATCGGCGAGGTTCA 359
Query 361 TGTT-CAGGTGAAAGAACTTCTGGATCATCTTGGAAACGATAAGACCGGTCAAAGATACG 419
|||| | ||||||||| ||| |||||||||| ||||||||||||||||||||||||||||
Sbjct 360 TGTTTC-GGTGAAAGAGCTTTTGGATCATCTCGGAAACGATAAGACCGGTCAAAGATACG 418
Query 420 TCACATATCAAATCGGGAAATCCAAAGCCGATATTAGTTTCACTTATTCGTTCACAGGTC 479
|||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct 419 TCACATATCAAATCGGGAAAACCAAAGGCGATATTAGTTTCACTTATTCGTTCACAGGTC 478
Query 480 CGGTGGAGGTCCCGACCGGTGGCGGCTGCTCACGGTACGCAGCTCAAGCGCCGGTGCGTC 539
||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 479 AGGTGGGGGTCCCGACCGGTGGCGGCTGCTCACGGTACGCAGCTCAAGTGCCGGTGCGTC 538
Query 540 CTGTATCGACCTACCGGCCCGTTTTGAACGGACCCATGTTGAGTCAGTTGAACGGACCCG 599
|||||||||||||||| || |||| |||||||||| ||||||||||||||||||||||||
Sbjct 539 CTGTATCGACCTACCGACCTGTTTCGAACGGACCCGTGTTGAGTCAGTTGAACGGACCCG 598
Query 600 TGTTGAGCCAGTTG 613
||||||| ||||||
Sbjct 599 TGTTGAGTCAGTTG 612
Score = 579 bits (313), Expect = 2e-164
Identities = 372/400 (93%), Gaps = 5/400 (1%)
Strand=Plus/Plus
Query 665 GGACCCGTGTTGAGCCAGTTGAACGGACCCGTGTTGAGTCAGTTGCTACCAAGTGTTGGA 724
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 568 GGACCCGTGTTGAGTCAGTTGAACGGACCCGTGTTGAGTCAGTTGCTTCCAAGTGTTGGA 627
Query 725 TCGTTTAGTTACAACCACGTTCCTTGTCAGCCACCGATTTATCCACCACTTGCTCAGCCT 784
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 628 TCGTTTAGTTACAACCACGTTCCTTCTCAGCCACCGATTTATCCACCACTTGCTCAGCCG 687
Query 785 GAGATTCTTCCACCGGTATGCTTCCCCGGATTGTATCCGCCGAGTAACATGCCGGGAAGT 844
|||||||||||||||| ||||||||||||| |||||||| |||||||||||||||||||
Sbjct 688 GAGATTCTTCCACCGGCATGCTTCCCCGGAGTGTATCCGATGAGTAACATGCCGGGAAGT 747
Query 845 CCACCCACAATGTATCAATCTATATTTCCTGGCTTATCATGTCCACCAGAAGGTTATTCA 904
|||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct 748 CCACCCACAATGTATCCATCTATATTTCCTGGCTTATCATGTCCACCGGAAGGTTATTCT 807
Query 905 ACGGTGGCTCCGCCGCTGACACAACCGGGACTATATCCACCGATGAGTCCTTACAGATAT 964
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct 808 ACGGTGGCTCCGCCGCTGACACAACCGGGACTATATCCACCGATCAGTCCTTACAGATTT 867
Query 965 TAATTGATTGTCAACGTCTGGAAGCCTAGTCGTCGGTTTGGAGATTTGTTGATTTTATTT 1024
||||| | ||||||||||| ||| |||||||||||| |||||||||| |||| | |||
Sbjct 868 TAATTAAATGTCAACGTCTCCAAGACTAGTCGTCGGTGAGGAGATTTGTAGATTCTGTTT 927
Query 1025 AACTAAT---GATGTCATCAATTCCCCC-AACTTGTGTGT 1060
||||||| |||||||||| ||||||| |||||||||||
Sbjct 928 AACTAATAATGATGTCATCA-TTCCCCCCAACTTGTGTGT 966
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42926404542
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5