BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G62790.1
Length=599
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486781 jgi|Araly1|486781|fgenesh2_kg.5__2773__AT3G62790.1 774 0.0
> Ahg486781 jgi|Araly1|486781|fgenesh2_kg.5__2773__AT3G62790.1
Length=584
Score = 774 bits (419), Expect = 0.0
Identities = 539/592 (91%), Gaps = 28/592 (5%)
Strand=Plus/Plus
Query 28 GGAAATCAGGCGAAGAAGACGACTAAATTTCTCC------TGGGATT--AGAGAGAGAG- 78
||||||||||||||||||||||| |||||||||| ||||||| ||||||||||
Sbjct 1 GGAAATCAGGCGAAGAAGACGACGAAATTTCTCCAGGATTTGGGATTCGAGAGAGAGAGT 60
Query 79 GAAGGAAAAATGGCGTCGGGGTGGGGGATAACGGGAAACAAAGGGAGGTGTTACGATTTC 138
| | ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 61 G-A-GAAAAATGGCGTCGGGGTGGGGGATAACGGGAAACAAAGGGAGATGTTACGATTTC 118
Query 139 TGGATGGATTTCAGCGAATGTATGTCTCATTGCAGAGAGCCCAAAGACTGTACTCTTCTT 198
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 119 TGGATGGATTTCAGCGAATGTATGTCTCATTGCAGAGAGCCCAAAGATTGTACACTTCTT 178
Query 199 CGTGAAGACTACCTCGAGTGTCTTCACCATTCCAAAGAGTTCCAACGAAGAAACAGGATA 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 CGTGAAGACTACCTCGAGTGTCTTCACCATTCCAAAGAGTTCCAACGAAGAAACAGGATA 238
Query 259 TACAAAGAAGAACAACGTAAACTAAGAGCTGCATCAAGGAAAGGCGAAGAAACCGGGGAT 318
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 239 TACAAAGAGGAACAACGTAAACTAAGAGCTGCTTCAAGGAAAGGCGAAGAAACCGGGGAT 298
Query 319 GGGACTCATACTCATCACTAGTC-GAGA-TTTTCCTCCTATCTCCAAAGTTTGCATCTTT 376
|||||||||||||| |||||||| |||| |||| ||||||||||||||||||||||||||
Sbjct 299 GGGACTCATACTCAGCACTAGTCAGAGAATTTTTCTCCTATCTCCAAAGTTTGCATCTTT 358
Query 377 CGAAGAATAAACAAAAGTTTCTT-GAAGATTTCTGTATCTTGTGTGCCAAACTTCATTTG 435
|||||||||| || || ||||| |||||||||||||| ||||| ||||||||||||||
Sbjct 359 AGAAGAATAAA-AAGAGGTTCTTTGAAGATTTCTGTATGTTGTG--CCAAACTTCATTTG 415
Query 436 ATCGTATTCA------GTTTGCTTTTGCAATGGAtttttt-tGTCTTTGCTTTGTCTATT 488
|| || |||| ||||||| |||||||||||||||| | | ||| ||| |||||||
Sbjct 416 ATTGTTTTCACTTTCTGTTTGCTCTTGCAATGGATTTTTTCTTT-TTT-CTT-GTCTATT 472
Query 489 ACCTTTGACCGAGTTGTAATATGCCTTTGGCTA-CTCGTCAAACACAGACTCCTTCTTTA 547
||||||||| |||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct 473 ACCTTTGACTGAGTTGTAATATGCCTTTGGCTTGCTCATCAAACACAGACTCCTTCTTTT 532
Query 548 ATGGTAATAATTACTCCTACAGTTATATTAAAATCATTATTCGAGAGACATT 599
|||||||||||||||| ||||| |||||||||||||| |||||| ||| |||
Sbjct 533 ATGGTAATAATTACTCTTACAGGTATATTAAAATCATAATTCGAAAGATATT 584
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21939463675
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5