BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G62810.1

Length=620
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg486784 jgi|Araly1|486784|fgenesh2_kg.5__2776__AT3G62810.1         654    0.0  


> Ahg486784 jgi|Araly1|486784|fgenesh2_kg.5__2776__AT3G62810.1
Length=513

 Score =  654 bits (354),  Expect = 0.0
 Identities = 479/535 (90%), Gaps = 26/535 (5%)
 Strand=Plus/Plus

Query  50   GACGGCGGAGGTTGAAAGGGGAAAGAGCAGAAATGGTGACCGGAGAAGCGTTGATCGCGT  109
            ||||||||||||||||||||||| ||| ||||||||||||||||||||| ||||||||||
Sbjct  2    GACGGCGGAGGTTGAAAGGGGAAGGAGTAGAAATGGTGACCGGAGAAGCATTGATCGCGT  61

Query  110  ACAGAGCACTGCTCAGGGCAACAAAG-AAATCATTCGCCGGAGATACCGAGATGCTAAAA  168
            ||||||| ||||||| ||| || ||| ||||||||||| || ||||| ||||||||||||
Sbjct  62   ACAGAGCTCTGCTCAAGGCTAC-AAGAAAATCATTCGCTGGTGATACTGAGATGCTAAAA  120

Query  169  GCTTCGGCGTCCGAGATCCGTAAGAAATTCGAAGAGAATCGCCTCGTGGCTTCTAACTCC  228
            ||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct  121  GCTTCAGCGTCCGAGATCCGTAAGAAATTCGAAGAGAACCGCCTCGTGGCTTCCAACTCC  180

Query  229  GACATCACTCGCCTTCTAGAAGAGGCGCGTGAAGCGACGCAGTTCATTTCCACCATGATC  288
            ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct  181  GACATCACTCGCCTTCTCGAAGAGGCGCGTGAAGCCACGCAGTTCATTTCCACCATGATC  240

Query  289  GTCCAGGCTAAACTCAACGAACGCGGCGGATATGAGATGAAAGCAAGTCAGGAACACGCG  348
            |||||||| ||||| ||||||||||||||||| ||| |||||||||||||||||||||| 
Sbjct  241  GTCCAGGCCAAACTAAACGAACGCGGCGGATACGAGGTGAAAGCAAGTCAGGAACACGCA  300

Query  349  GGAGCTACTTTGGAGCTTCCATCAGAGGAGATGCTTCGGAAAAAATCTGTATGAGT--GT  406
            |||||||||||||||||||||||||||||||||||||||||| |||||||||||||  ||
Sbjct  301  GGAGCTACTTTGGAGCTTCCATCAGAGGAGATGCTTCGGAAATAATCTGTATGAGTAAGT  360

Query  407  AAGTCTGAAATTGGATTACTTCTCCCTTACTCGTTTTGTTTGATCGGGAAAGGTGGATCC  466
             |||||||||||||||||||| ||||||||||||||||||| ||||||     |   || 
Sbjct  361  CAGTCTGAAATTGGATTACTTGTCCCTTACTCGTTTTGTTTAATCGGG-----T---TC-  411

Query  467  TTTTTATGCTTCTCTGTTTGTTTTCTCTTTTCACGGCCAAGTTGAATCAATAAGAAGCTC  526
            |       ||     ||||||||||||| ||||||||||| || ||||||||||||  ||
Sbjct  412  T-------CT-----GTTTGTTTTCTCTCTTCACGGCCAAATTTAATCAATAAGAAA-TC  458

Query  527  TTTACATACATTTTTGGATGAGATTCGTCCATTTCAAAACAAGAATTACAGAATT  581
             ||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct  459  CTTACATACATTTTTGGATGAGATTCGTCCATTTCAGATCAAGAATTACAGAATT  513



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22683135615


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5