BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G62820.1
Length=753
Score E
Sequences producing significant alignments: (Bits) Value
Ahg939371 jgi|Araly1|939371|scaffold_503562.1 957 0.0
> Ahg939371 jgi|Araly1|939371|scaffold_503562.1
Length=625
Score = 957 bits (518), Expect = 0.0
Identities = 585/618 (95%), Gaps = 2/618 (0%)
Strand=Plus/Plus
Query 22 TTCTCACAAAACATG-AAAACTCCCATGAGTTCTTCTATCACGTTTGCACTCGTCTTCTT 80
|||| |||| |||| ||||| | |||||||||||| ||||| |||||||| ||||||||
Sbjct 9 TTCTTACAACCCATGAAAAAC-CTCATGAGTTCTTCCATCACATTTGCACTTGTCTTCTT 67
Query 81 TCTCCTTTCTCTCAACCCAACTTCATCATTACCGTCCAAACGCGAAAGCTACGTTCAAAA 140
|||| |||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 68 TCTCGTTTCTCTCAACCCAACATCATCATTACCGTCTAAACGCGAAAGCTACGTTCAAAA 127
Query 141 CGCGTGTAGTGTTACACGCTACCAAGACCTCTGCGCTAAAACGCTATTGCCGTTTGCATC 200
||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||
Sbjct 128 CGCGTGTAGTGTTACACGCTACCAAGATCTCTGCGCTAAAACGCTATCGCCTTTTGCATC 187
Query 201 AGTCGCCAAGAACAGTCCCAGCAAATGGGCACGTGCCGGCGTTTCCGTTGCCATAACCGA 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 188 AGTCGCCAAGAACAGTCCCAGCAAATGGGCACGTGCCGGCGTTTCCGTTGCCATAACCGA 247
Query 261 CAACAAAGACGTCCTTAGACACCTTCTCAAAACGAGGCTTTCAACGATTGGGAAACGAGA 320
|||||||||||||||||||||||| ||||||||| ||||||||||||||| |||||| ||
Sbjct 248 CAACAAAGACGTCCTTAGACACCTACTCAAAACGCGGCTTTCAACGATTGAGAAACGCGA 307
Query 321 CCGAATCGCTTTGTCGGATTGTCGCGAACTTCTCCAAGACTCTCTTGATAGTCTCCACAA 380
||||||||||||||||||||| || ||||| ||||||||||||||||||||||| |||||
Sbjct 308 CCGAATCGCTTTGTCGGATTGCCGAGAACTGCTCCAAGACTCTCTTGATAGTCTGCACAA 367
Query 381 GTCCTTGGCCGTCCTCCGGACACTCAGAGCCAGCGAGTTTCAGCAGCAGATGAGTGATCT 440
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 368 GTCCTTGGCCGTCCTTCGGACACTCAGCGCCAGCGAGTTTCAGCAGCAGATGAGTGATCT 427
Query 441 TGCTACGTGGCTTAGCTCTTCCCTCACTGACAAGGACACGTGTCTTGATGGGTTTGAAAA 500
||| |||||||||||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct 428 TGCCACGTGGCTTAGCACTTCCCTCACGGACAAGGACACGTGTCTTGATGGGTTTGAAAA 487
Query 501 GACATCGACGAGGTCATCATCAACGGTCAGGATGATTCGGAAGAGAGTCACGACGTCTAT 560
||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 488 GACGTCCACGAGGTCATCATCAACGGTCAGGATGATTCGGAAGAGAGTCACGACGTCTTT 547
Query 561 GTACTTGTCCAGCAATTCTCTCGCACTCCTCAACAAGCTAGCGGCTAATGGTTTGTAATC 620
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 548 GTATTTGTCCAGCAATTCTCTCGCACTCCTCAACAAGCTAGCGGCTAATGGTTTGTAATC 607
Query 621 TCTTAAATCATAAACTTT 638
|||||||||||||| |||
Sbjct 608 TCTTAAATCATAAAATTT 625
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27753483576
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5