BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G62840.1
Length=687
Score E
Sequences producing significant alignments: (Bits) Value
Ahg899270 jgi|Araly1|899270|Al_scaffold_0005_3236 566 9e-161
Ahg483945 jgi|Araly1|483945|fgenesh2_kg.4__3005__AT2G47640.1 427 4e-119
> Ahg899270 jgi|Araly1|899270|Al_scaffold_0005_3236
Length=330
Score = 566 bits (306), Expect = 9e-161
Identities = 322/330 (98%), Gaps = 0/330 (0%)
Strand=Plus/Plus
Query 121 ATGAGTAAACCAATGGAAGAGGATACCAACCAGGGAAAGACTGAGGAGGAGGAGTTCAAC 180
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1 ATGAGTAAACCAATGGAAGAGGATACCACCCAGGGAAAGACTGAGGAGGAGGAGTTCAAC 60
Query 181 ACTGGACCACTCTCTGTTTTGATGATGAGTGTTAAGAATAACACTCAGGTGTTGATCAAT 240
|||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 61 ACTGGACCGCTCTCTGTTCTGATGATGAGTGTTAAGAATAACACTCAGGTGTTGATCAAT 120
Query 241 TGCCGTAACAACAGGAAACTCCTTGGCCGAGTTAGGGCTTTTGACAGGCACTGCAACATG 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TGCCGTAACAACAGGAAACTCCTTGGCCGAGTTAGGGCTTTTGACAGGCACTGCAACATG 180
Query 301 GTTCTTGAAAATGTCAGAGAAATGTGGACTGAGGTTCCGAAAACCGGAAAAGGAAAGAAG 360
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 181 GTTCTTGAGAATGTCAGAGAAATGTGGACTGAGGTACCGAAAACCGGAAAAGGAAAGAAG 240
Query 361 AAAGCTCTTCCTGTTAACAGAGATCGATTCATCAGCAAGATGTTCCTGCGTGGAGACTCA 420
|||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 241 AAAGCTCTTCCTGTTAACAGAGATCGATTCATCAGCAAGATGTTTCTGCGGGGAGACTCT 300
Query 421 GTCATTATCGTCCTCAGGAACCCCAAGTGA 450
||||||||||||||||||||||||||||||
Sbjct 301 GTCATTATCGTCCTCAGGAACCCCAAGTGA 330
> Ahg483945 jgi|Araly1|483945|fgenesh2_kg.4__3005__AT2G47640.1
Length=562
Score = 427 bits (231), Expect = 4e-119
Identities = 306/343 (89%), Gaps = 2/343 (1%)
Strand=Plus/Plus
Query 113 AAGTGAACATGAGTAAACCAATGGAAGAGGATACCAACCAGGGAAAGACTGAGGAGGAGG 172
|||| |||||||| || |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 108 AAGTCAACATGAGCAAGCCAATGGAAGAGGATACCAACCAGGGAAAGACTGAGGAAGAGG 167
Query 173 AGTTCAACACTGGACCACTCTCTGTT-TTGATGATGAGTGTTAAGAATAACACTCAGGTG 231
| |||||||| || |||||||||||| || |||||||| || |||||||| ||||||||
Sbjct 168 AATTCAACACCGGGCCACTCTCTGTTCTT-ATGATGAGCGTGAAGAATAATACTCAGGTT 226
Query 232 TTGATCAATTGCCGTAACAACAGGAAACTCCTTGGCCGAGTTAGGGCTTTTGACAGGCAC 291
|| ||||||||||| |||||||||||||| ||||| |||| ||||| |||||||| |||
Sbjct 227 TTAATCAATTGCCGGAACAACAGGAAACTTCTTGGGAGAGTGAGGGCGTTTGACAGACAC 286
Query 292 TGCAACATGGTTCTTGAAAATGTCAGAGAAATGTGGACTGAGGTTCCGAAAACCGGAAAA 351
||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |||
Sbjct 287 TGCAACATGGTTCTTGAAAATGTCAGAGAGATGTGGACTGAGGTTCCGAAAACTGGGAAA 346
Query 352 GGAAAGAAGAAAGCTCTTCCTGTTAACAGAGATCGATTCATCAGCAAGATGTTCCTGCGT 411
|| ||||||||||| ||||| || ||||||||||| ||||| ||||||||||| || |||
Sbjct 347 GGCAAGAAGAAAGCACTTCCGGTGAACAGAGATCGGTTCATAAGCAAGATGTTTCTACGT 406
Query 412 GGAGACTCAGTCATTATCGTCCTCAGGAACCCCAAGTGAAAGA 454
||||| ||||||||||||||||||||||| || || ||| |||
Sbjct 407 GGAGATTCAGTCATTATCGTCCTCAGGAATCCAAAATGAGAGA 449
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25237371054
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5