BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G62850.1
Length=1419
Score E
Sequences producing significant alignments: (Bits) Value
Ahg899271 jgi|Araly1|899271|Al_scaffold_0005_3237 1565 0.0
Ahg332172 jgi|Araly1|332172|fgenesh1_pm.C_scaffold_8001515 658 0.0
Ahg319176 jgi|Araly1|319176|fgenesh1_pm.C_scaffold_3002192 625 3e-178
> Ahg899271 jgi|Araly1|899271|Al_scaffold_0005_3237
Length=1455
Score = 1565 bits (847), Expect = 0.0
Identities = 1224/1394 (88%), Gaps = 73/1394 (5%)
Strand=Plus/Plus
Query 1 ATGTATACGCCGGGAGCGGCGAAGCCTGAGTACGCGAGAGCTAAAATAGCTGTGTGGTGG 60
||||||| | |||||||||| ||||||||||||||| |||||||||||| |||||||||
Sbjct 1 ATGTATAAGAGGGGAGCGGCGCAGCCTGAGTACGCGACAGCTAAAATAGCGGTGTGGTGG 60
Query 61 GACATGAAG-GACTGTCCGATTCCAGAGGGTTATGATGCTCGTCTGGTCCGTCCGAGCAT 119
||||||||| | |||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 61 GACATGAAGTG-CTGTCCGATTCCCGAGGGTTATGATGCTCGTCTGGTCCGCCCGAGCAT 119
Query 120 AGAAGCGGCGTTCAATGAACTAGGCTACTCTGGTCCTATCTCCATCACCGGCTATGGTGA 179
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct 120 AGAAGCGGCGTTCAATGAACTAGGCTACTCTGGTCCTGTCTCCATCACCGGCTATGGCGA 179
Query 180 CCAAAGAGAAACCCCTTGTCAGATCCTGCGAGGGCTCTCTTCCACCGGAGTCGCTGTAGC 239
||||||| ||||||||||||| ||||||||||| ||||||||||||||||||||||| ||
Sbjct 180 CCAAAGACAAACCCCTTGTCACATCCTGCGAGGCCTCTCTTCCACCGGAGTCGCTGTTGC 239
Query 240 ACAAATCATACCCGAAAGCAGATGCTCACTCATGTATTCGAGTATGCTGGAGTGGCGAGA 299
|||||||| | ||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 240 ACAAATCAAATCCGAAAGCACATGCTCACTCATGTATTCGAATATGCTGGAGTGGCGAGA 299
Query 300 TCTTAATCCTCCTCCGGCTACAATGATGCTCGTATCCGATCAGTGGC-AGCATGTCTTCG 358
|| |||||||||||||||||||||||||||| ||||||||||||||| || ||||||||
Sbjct 300 TCATAATCCTCCTCCGGCTACAATGATGCTCATATCCGATCAGTGGCAAG-ATGTCTTCT 358
Query 359 CTTGGGATCTGTCCCGTCTACAACAACACACGAAATACAACCTTTTTCTGGCTTATTCAA 418
||||||||||| ||||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct 359 CTTGGGATCTGGCCCGTCTACAACAGCACACGAAATACAACCTTTTTCTGTCTTATTCAA 418
Query 419 CTGAGCCTTTCGCAGGTTCGGCACT-GAGACCTTGTGGAGAGTGGATCTGGA-GAAATTT 476
|| || || | |||||||||||| || |||||||||| |||||| ||||| | || ||
Sbjct 419 CTAAGTCTAACATAGGTTCGGCACTGGA-ACCTTGTGGAAAGTGGACCTGGACG-AAGTT 476
Query 477 ACTTGAGACCAAAAGGGAATTTGTTCAGGA-CAAGTGCAGCAGCAGTTGTGAGGTATCTC 535
||||| ||||||||||||| |||||||||| ||| | || ||||| ||||| |||||
Sbjct 477 ACTTGCGACCAAAAGGGAACTTGTTCAGGACCAAAAG-TGCTGCAGTCGTGAGTTATCTG 535
Query 536 CCATGTTTTATTGCAAATCTTGCTCTTACCAGGGCCAAAGCGTGGAGGGTTTCAGGAGGC 595
||||||||||||||||||| ||| |||||| ||||||||||||||||||||||||| ||
Sbjct 536 CCATGTTTTATTGCAAATCGTGCAGTTACCAAGGCCAAAGCGTGGAGGGTTTCAGGAAGC 595
Query 596 ATGTCTCGAGTGGAAAGCATGCAGTGAAAGAGGTTACAAACCGTATACATCCAGAACTTG 655
|| |||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 596 ATCTCTCGAGTAGAAAGCATGCAGTGAGAGAGGTTACAAACCGTATACATCCAGAACTTG 655
Query 656 ACTATTTGACGAGGACGTGGGCAAAGAACTACACTGCGAAGCCTGAGTACGCGACAGCTC 715
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 656 ACTATTTGACGAGGACGTGGGCAAAGAACTACCCTGCGAAGCCTGAGTACGCGACAGCTC 715
Query 716 CAATAGTGGTGTGGTGGGACATGAAGGACTGTCCGATTCCAGAGGGTTATGATGCTCGTC 775
||||| ||||||||||||||||| ||||||||||||||| |||||||||||||||||||
Sbjct 716 AAATAGCGGTGTGGTGGGACATGATGGACTGTCCGATTCCCGAGGGTTATGATGCTCGTC 775
Query 776 AGGTCCGTCCGAGTTTAGAAGGGGCGTTCAAGAAACTAGGCTACTCTGGTCCTGTCTCCA 835
|||||||||||||| |||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 776 AGGTCCGTCCGAGTATAGAAGCCGCGTTCAAGAAACTAGGCTACTCGGGTCCTGTCTCCA 835
Query 836 TCACCGGATGTGGCGACCACAACAAAACCCCTGATCACATCCTGCGAGAGCTCTCTTCCA 895
|||| | | ||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 836 TCACTGCCTATGGCGACCACAACAAAACCCCTGATTACATCCTGCGAGAGCTCTCTTCCA 895
Query 896 CTGGAGTCGATCTTGCACATTCCATCGACGAAGTCATATACAGTCGCATGTTTATAAATA 955
|||||||||| | | ||||||||||||||||||||| ||||
Sbjct 896 CTGGAGTCGA------A---------G------TCATATACAGTCGCATGTTTAGAAATT 934
Query 956 TGAAGCAGTGGAAAGCTCGTAATCCTCCTCCGGCTACAATCATGCTCATATCCGATGGTG 1015
|| | ||||||||| | |||||||||||||||||||||| |||||||||||||||| ||
Sbjct 935 TGTCGGAGTGGAAAGATAGTAATCCTCCTCCGGCTACAATTATGCTCATATCCGATGCTG 994
Query 1016 TGGTGATGATGTTCGAAAATT-TAATCGCC-GACTTACTACAAGAGACGAAGTACAACCT 1073
||| | |||||||| | || | | ||| | ||||||||||||||||| ||||||||
Sbjct 995 TGGAGGTGATGTTCTCAGATGCTCTT-GCCCGG-TTACTACAAGAGACGAAATACAACCT 1052
Query 1074 TTTTCTGGCTTATTCGTACAGGCCTTACAAAATGTCTGTCCTGCTCACTTCTGCAGAGTG 1133
||||||||||||||| || ||||||||||||||||| ||| |||||||||||||||||||
Sbjct 1053 TTTTCTGGCTTATTCATATAGGCCTTACAAAATGTCAGTCTTGCTCACTTCTGCAGAGTG 1112
Query 1134 GCTTTGGAAAAGCTTACTTGTTGCAGGTGtttttttCTCCTCTCCTTATCATCATCATCC 1193
||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct 1113 GCTTTGGGAAAGCTTACTTCTTGCAGGTGTTTTTTTCTCCTCTCCTTATCATCATC--C- 1169
Query 1194 ACTAATGACTCTGTTTCTGAGCTATATAATTACGCTCTCTGTTTCAGAGACAAGAAACCA 1253
||||| | |||| || | |||| ||||| | | ||| | || | |
Sbjct 1170 ACTAA---C---GTTT--GAA--AC-TAATGACGCTA-C------A-AGA-A-GA--C-A 1205
Query 1254 CGTTCTTCGCAAGTGCAGTCAAAGTCAAAGGGGTGAACCGTCTACCAAAATGTTTTCTTG 1313
||||||| ||||||||||| | ||||||||||| ||||||||||||||||||||
Sbjct 1206 CGTTCTTGGCAAGTGCAGT----G--AAAGGGGTGAA---TCTACCAAAATGTTTTCTTG 1256
Query 1314 CAT-GTTGTGTCTTTGTGATTGCAAAAGCCTTGAAGATTTGAGGACGCATCTCTCAAGTG 1372
|| || ||||||||||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct 1257 CACAGT-GTGTCTTTGTGATTGCAAAGGCCTTGAAGATTTGAGGACGCACCTCTCAAGTG 1315
Query 1373 AAGACCATGCAGTG 1386
||||||||||||||
Sbjct 1316 AAGACCATGCAGTG 1329
Score = 305 bits (165), Expect = 5e-82
Identities = 278/330 (84%), Gaps = 18/330 (5%)
Strand=Plus/Plus
Query 691 GCGAAGCCTGAGTACGCGACAGCTCCAATAGTGGTGTGGTGGGACATGAAG-GACTGTCC 749
||| |||||||||||||||||||| ||||| ||||||||||||||||||| | ||||||
Sbjct 19 GCGCAGCCTGAGTACGCGACAGCTAAAATAGCGGTGTGGTGGGACATGAAGTG-CTGTCC 77
Query 750 GATTCCAGAGGGTTATGATGCTCGTCAGGTCCGTCCGAGTTTAGAAGGGGCGTTCAA-GA 808
|||||| ||||||||||||||||||| |||||| ||||| |||||| ||||||||| |
Sbjct 78 GATTCCCGAGGGTTATGATGCTCGTCTGGTCCGCCCGAGCATAGAAGCGGCGTTCAATG- 136
Query 809 AACTAGGCTACTCTGGTCCTGTCTCCATCACCGGATGTGGCGACCACA-ACAAAACCCCT 867
|||||||||||||||||||||||||||||||||| | ||||||||| | ||||| |||||
Sbjct 137 AACTAGGCTACTCTGGTCCTGTCTCCATCACCGGCTATGGCGACCAAAGACAAA-CCCCT 195
Query 868 -GATCACATCCTGCGAGAGC-TCTCTTCCACTGGAGTCGATCTTGCACAT-TCCA-TCGA 923
| |||||||||||||| || |||||||||| ||||||| | ||||||| || | ||
Sbjct 196 TG-TCACATCCTGCGAG-GCCTCTCTTCCACCGGAGTCGCTGTTGCACAAATCAAATC-- 251
Query 924 CGAA-GTCATATACAGTCGCATGT-TTATAAATATGAAGCAGTGGAAAGCTCGTAATCCT 981
|||| | || || | | ||||| || || |||| | ||||| || || |||||||
Sbjct 252 CGAAAG-CACATGCTCACTCATGTATTCGAA-TATGCTGGAGTGGCGAGATCATAATCCT 309
Query 982 CCTCCGGCTACAATCATGCTCATATCCGAT 1011
|||||||||||||| |||||||||||||||
Sbjct 310 CCTCCGGCTACAATGATGCTCATATCCGAT 339
Score = 268 bits (145), Expect = 6e-71
Identities = 328/409 (80%), Gaps = 41/409 (10%)
Strand=Plus/Plus
Query 19 GCGAAGCCTGAGTACGCGAGAGCTAAAATAGCTGTGTGGTGGGACATGAAGGACTGTCCG 78
||||||||||||||||||| |||| ||||||| |||||||||||||||| ||||||||||
Sbjct 691 GCGAAGCCTGAGTACGCGACAGCTCAAATAGCGGTGTGGTGGGACATGATGGACTGTCCG 750
Query 79 ATTCCAGAGGGTTATGATGCTCGTCTGGTCCGTCCGAGCATAGAAGCGGCGTTCAATG-A 137
||||| ||||||||||||||||||| |||||||||||| |||||||| |||||||| | |
Sbjct 751 ATTCCCGAGGGTTATGATGCTCGTCAGGTCCGTCCGAGTATAGAAGCCGCGTTCAA-GAA 809
Query 138 ACTAGGCTACTCTGGTCCTATCTCCATCACCGGCTATGGTGACCA-AAGAGAAACCCCTT 196
|||||||||||| |||||| |||||||||| | |||||| ||||| || | ||||||| |
Sbjct 810 ACTAGGCTACTCGGGTCCTGTCTCCATCACTGCCTATGGCGACCACAACA-AAACCCC-T 867
Query 197 G-TCAGATCCTGCGAGGGCTCTCTTCCACCGGAGTCGCTGTAGCACAAATCATACCCGAA 255
| | | |||||||||| |||||||||||| ||||| | | || |||| |
Sbjct 868 GATTACATCCTGCGAGAGCTCTCTTCCACTGGAGT--C----G---AAGTCAT-----AT 913
Query 256 AGCAGATGCTCACTCATGTATTCG-AGTATGCT-GGAGTGGCGAGATCTTAATCCTCCTC 313
| | | | | | ||||| || | | | || | ||||||| |||| |||||||||||
Sbjct 914 A-C--A-G-T--CGCATGT-TTAGAAATTTG-TCGGAGTGGAAAGATAGTAATCCTCCTC 964
Query 314 CGGCTACAATGATGCTCGTATCCGAT-CAGTGGCAGCATG-TCTTCGCTTG-GGATC-TG 369
|||||||||| |||||| |||||||| | |||| || || | ||| | | | || ||
Sbjct 965 CGGCTACAATTATGCTCATATCCGATGCTGTGG-AG-GTGATGTTCTC-AGATGCTCTTG 1021
Query 370 TCCC-GTCTACAACAACACACGAAATACAACCTTTTTCTGGCTTATTCA 417
||| || ||| |||| | ||||||||||||||||||||||||||||||
Sbjct 1022 -CCCGGT-TACTACAAGAGACGAAATACAACCTTTTTCTGGCTTATTCA 1068
> Ahg332172 jgi|Araly1|332172|fgenesh1_pm.C_scaffold_8001515
Length=1404
Score = 658 bits (356), Expect = 0.0
Identities = 942/1213 (78%), Gaps = 87/1213 (7%)
Strand=Plus/Plus
Query 16 GCGGCGAAGCCTGAGTACGCGAGAGCTAAAATAGCTGTGTGGTGGGACA-TGAAGGACTG 74
|||||| ||||| | ||||||| |||| ||||||| ||||||||||||| || ||||||
Sbjct 13 GCGGCGGAGCCTAAATACGCGACAGCTGAAATAGCGGTGTGGTGGGACATTG-TGGACTG 71
Query 75 TCCGATTCCAGAGGGTTATGATGCTCGTCTGGTCCGTCCGAGCATAGAAGCGGCGTTCAA 134
||||||||| ||||||||||| |||| || |||||||||||| ||||||| |||||||||
Sbjct 72 TCCGATTCCCGAGGGTTATGAAGCTCATCGGGTCCGTCCGAGTATAGAAGGGGCGTTCAA 131
Query 135 TG-AACTAGGCTACTCTGGTCCTATCTCCATCACCGGCTATGGTGACCAAAGAGAAACCC 193
| |||||||||||||||||||| |||||||||| | |||||| ||||||| | ||||||
Sbjct 132 -GAAACTAGGCTACTCTGGTCCTGTCTCCATCACTGCCTATGGCGACCAAACACAAACCC 190
Query 194 CTTG-TCAGATCCTGCGAGGGCTCTCTTCCACCGGAGTCGCTGTAGCACAAATCA-TACC 251
| || | | |||||||||||||||||||||| ||||||| ||| ||||| | || || |
Sbjct 191 C-TGATAATCTCCTGCGAGGGCTCTCTTCCACTGGAGTCGATGTTGCACATACCATTA-C 248
Query 252 CGAAAGCAGATGCTCACTCATGTATTC-GAGTATGCTGGAGTGGCGA-GATCTTAATCCT 309
|||||||| |||| | ||||||||||| || |||| |||| |||||| | || || ||||
Sbjct 249 CGAAAGCACATGCGCTCTCATGTATTCGGA-TATGGTGGAATGGCGACG-TCATATTCCT 306
Query 310 CCTCCGGCTACAATGATGCTCGTATCCGATCA-GTGGCAGCATGTCTTCGC-TTGGGATC 367
|||||||| ||||||||| || ||||| |||| |||| | ||||||||| | || |||||
Sbjct 307 CCTCCGGCGACAATGATGTTCATATCCAATCAGGTGG-ACCATGTCTTCTCATT-GGATC 364
Query 368 TGTCCCGTCTACAACAACACACGAAATACAACCTTTTTCTGGCTTATTCAACTGAG-CCT 426
|| |||| ||||||||| | ||| |||||||||| ||||||||||| || | || ||
Sbjct 365 TGGCCCGGCTACAACAAGAGACGCAATACAACCTCTTTCTGGCTTACTC-GGTTAGTTCT 423
Query 427 TTCG-CAGGT-TCGGCAC-TGAGACCTTGTGGAGAGTGGATCTGGAGA-AATTTACT--- 479
| || | | || | ||||| ||| || ||||||| ||||| | ||||||||
Sbjct 424 AAAGCCA--TACCAGCTCTTGAGA-CTTCTGCAGAGTGGCGCTGGA-ACAATTTACTAAA 479
Query 480 -T-G-AGACCAA-AAG-GGA-ATTTGTTCAGGACAAGTGCA-GCAGCAGTTGTGAGGT-A 531
| | |||| || ||| | | | ||| | | || | | | || || | | || |
Sbjct 480 GTCGAAGACGAAGAAGACCAGAGTGGTT-A--A-AA-TATATGAAGAAGAAG-AAAGTGA 533
Query 532 TC-TCCCATGTTTTATTGCAAATCTTGCTCTTACCAGGGCCAAAGCGTGGAGGG-TTTCA 589
| | ||||||||||||| ||||| ||| || | | |||||||| | ||||| |||
Sbjct 534 CCGTGCCATGTTTTATTGTAAATCGTGCGATTTCGATTGCCAAAGC-TTGAGGGAACTCA 592
Query 590 GGAGGCATGTCTCGAGTGGAAAGCATGCAGTGAAAGAGGTTACAAACCGTA-TACATCCA 648
||| |||| |||||||| || | |||||| || ||| || | || || | | | ||
Sbjct 593 GGAAGCATCTCTCGAGTAGATATCATGCAATGGGAGAACTTTTATGCCCTACTGC-TACA 651
Query 649 GAACTTGACT-ATTTGACGAGGACGTGGGCAAAGAACTACACTGCGAAGCCTGAGTACGC 707
||| || || | | |||| || ||||| || ||||| | | || |||||||| |||||
Sbjct 652 GAAATT-TCTCCTGTAACGATGAAGTGGGGAAGGAACTTCCCGGCCAAGCCTGAATACGC 710
Query 708 GACAGCTCCAATAGTGGTGTGGTGGGACA-TGAAGGACTGTCCGATTCCAGAGGGTTATG 766
|||||| ||| |||||| |||||||| || ||||||||||||||| ||||||||||
Sbjct 711 CACAGCTAAAATTCTGGTGTTGTGGGACATTG-TGGACTGTCCGATTCCCGAGGGTTATG 769
Query 767 ATGCTCGTCAGGTCCGTCCGAGTTTAGAAGGGGCGTTCAAGAAACTAGGCTACTCTGGTC 826
| | || || ||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 770 AAGTTCATCGGGTCCGTCCGAGTATAGAAGGGGCGTTCAAGAAACTAGGCTACTCTGGTC 829
Query 827 CTGTCTCCATCACCGGATGTGGCGACCACAACA-AAACCCCTGATCA-CATCCTGCGAGA 884
||||||||||||||| | ||||||||| | || ||||||||||||| | |||||||||
Sbjct 830 CTGTCTCCATCACCGCCTATGGCGACCA-ATCACAAACCCCTGATCATC-TCCTGCGAGG 887
Query 885 GCTCTCTTCCACTGGAGTCGATCTTGCACATTCCATCGAC-GAAGTCATATACAGTCGCA 943
|||||||||||||||||||| | || ||||| |||| || ||||||| |||||| | |
Sbjct 888 GCTCTCTTCCACTGGAGTCGCTGTTTCACATGCCATT-ACCGAAGTCAGATACAGAAGAA 946
Query 944 TGTTTATAA-ATATGAAGC-AGTGGAAAGCTCGT-AATCCTCCTCCGGCTACAATCATGC 1000
||||| || || ||| | | ||| || | | | ||||||||||| |||||||||||||
Sbjct 947 TGTTT-TACGATTTGATTCGA-TGGCAA-CACCTTAATCCTCCTCCAGCTACAATCATGC 1003
Query 1001 TCATATCCGATGGTGTGGTG-ATGATGTTCGAAAATTTAATCGCCGA-CTTACTACAA-G 1057
||||||||||| | | | | || | ||| || ||| | |||| ||| | |||| |
Sbjct 1004 TCATATCCGATCATATAGAGGATTAC-TTCTCAACTTTTGTTGCCGGTCTT-CAACAATG 1061
Query 1058 A-G-ACGAAGTACAA---C--CTTTTTC-TGGCTTATTCGTACAGGCCTTACAAAATGTC 1109
| | || || || | | | ||| |||||||||| | |||||| |||||||||
Sbjct 1062 TTGTATTAAATATAAATACAACATGTTCCTGGCTTATTCATTTAGGCCTAACAAAATGT- 1120
Query 1110 T-GTCCT-GCTCACTTCTGCAGAGTGGCTTTGGAAAAGCTTACTTGTTGCAGGTGttt-t 1166
| | ||| | |||| |||||||||||||| ||| |||||||||| | | |||||||| |
Sbjct 1121 TAGCCCTCG-TCACCTCTGCAGAGTGGCTCTGGGAAAGCTTACT-G--GAAGGTGTTTAT 1176
Query 1167 tt-tC-TCCTCTC 1177
|| || |||||||
Sbjct 1177 TTGTCCTCCTCTC 1189
Score = 300 bits (162), Expect = 2e-80
Identities = 334/413 (81%), Gaps = 28/413 (7%)
Strand=Plus/Plus
Query 691 GCGAAGCCTGAGTACGCGACAGCTCCAATAGTGGTGTGGTGGGACA-TGAAGGACTGTCC 749
||| ||||| | |||||||||||| ||||| |||||||||||||| || |||||||||
Sbjct 16 GCGGAGCCTAAATACGCGACAGCTGAAATAGCGGTGTGGTGGGACATTG-TGGACTGTCC 74
Query 750 GATTCCAGAGGGTTATGATGCTCGTCAGGTCCGTCCGAGTTTAGAAGGGGCGTTCAAGAA 809
|||||| ||||||||||| |||| || ||||||||||||| |||||||||||||||||||
Sbjct 75 GATTCCCGAGGGTTATGAAGCTCATCGGGTCCGTCCGAGTATAGAAGGGGCGTTCAAGAA 134
Query 810 ACTAGGCTACTCTGGTCCTGTCTCCATCACCGGATGTGGCGACCACAACA-AAACCCCTG 868
|||||||||||||||||||||||||||||| | | ||||||||| |||| |||||||||
Sbjct 135 ACTAGGCTACTCTGGTCCTGTCTCCATCACTGCCTATGGCGACCA-AACACAAACCCCTG 193
Query 869 ATCA-CATCCTGCGAGAGCTCTCTTCCACTGGAGTCGATCTTGCACATTCCATCGAC-GA 926
|| | | ||||||||| |||||||||||||||||||||| |||||||| |||| || ||
Sbjct 194 ATAATC-TCCTGCGAGGGCTCTCTTCCACTGGAGTCGATGTTGCACATACCATT-ACCGA 251
Query 927 A-GTCATATACAG-TCGCATGT-TTATAAATATGAAGCAGTGGAAA-GCTCGTAATCCTC 982
| | || || | | || ||||| || | |||| | | ||| | | || || |||||
Sbjct 252 AAG-CACATGC-GCTCTCATGTATTCGGA-TATGGTGGAATGGCGACG-TCATATTCCTC 307
Query 983 CTCCGGCTACAATCATGCTCATATCCGATG-GTGTGGTG-ATGATGTTCGAAAATTTAAT 1040
||||||| ||||| ||| |||||||| || | |||| ||| | ||| | || ||
Sbjct 308 CTCCGGCGACAATGATGTTCATATCCAATCAG-GTGGACCATG-TCTTCTCA--TTGGAT 363
Query 1041 C-G-CC-GACTTACTACAAGAGACG-AAGTACAACCTTTTTCTGGCTTATTCG 1089
| | || | || || |||||||||| || |||||||| ||||||||||| |||
Sbjct 364 CTGGCCCGGCT-ACAACAAGAGACGCAA-TACAACCTCTTTCTGGCTTACTCG 414
> Ahg319176 jgi|Araly1|319176|fgenesh1_pm.C_scaffold_3002192
Length=1404
Score = 625 bits (338), Expect = 3e-178
Identities = 939/1216 (77%), Gaps = 93/1216 (8%)
Strand=Plus/Plus
Query 16 GCGGCGAAGCCTGAGTACGCGAGAGCTAAAATAGCTGTGTGGTGGGACATGAAGGACTGT 75
|||||| |||| | ||||||| |||| ||||||| ||||||||||||||||||||||||
Sbjct 13 GCGGCGGCGCCTAAATACGCGACAGCTGAAATAGCGGTGTGGTGGGACATGAAGGACTGT 72
Query 76 CCGATTCCAGAGGGTTATGATGCTCGTCTGGTCCGTCCGAGCATAGAAGCGGCGTTCAAT 135
|||||||| ||||||||||| |||| || |||||||||||| ||||||| |||||||||
Sbjct 73 CCGATTCCCGAGGGTTATGAAGCTCATCGGGTCCGTCCGAGTATAGAAGGGGCGTTCAA- 131
Query 136 GAA-CTAGGCTACTCTGGTCCTATCTCCATCACCGGCTATGGTGACCAAAGAGAAACCCC 194
||| |||||||||||||||||| |||||||||| | |||||| ||||||| | |||||||
Sbjct 132 GAAACTAGGCTACTCTGGTCCTGTCTCCATCACTGCCTATGGCGACCAAACACAAACCCC 191
Query 195 TTG-TCAGATCCTGCGAGGGCTCTCTTCCACCGGAGTCGC-TGTAGCACAAATCAT-ACC 251
| | | | ||||||||||||||||||| || |||||| | ||| ||||| ||| |||
Sbjct 192 T-GATAATCTCCTGCGAGGGCTCTCTTCAACTGGAGTC-CATGTTGCACATGCCATTACC 249
Query 252 CGAAAGCAGATGCTCACTCATGTATTCG-AGTATGCTGGAGTGGCGA-GATCTTAATCCT 309
||||||| |||| | |||||||||||| | |||| |||| |||||| | || || ||||
Sbjct 250 -GAAAGCACATGCGCTCTCATGTATTCGGA-TATGGTGGAATGGCGACG-TCATATTCCT 306
Query 310 CCTCCGGCTACAATGATGCTCGTATCCGATCAG-TGGCAGCATGTCTTCGC-TTGGGATC 367
|||||||| ||||||||| || ||||| ||||| ||| | ||||||||| | |||| |||
Sbjct 307 CCTCCGGCGACAATGATGTTCATATCCAATCAGGTGG-ACCATGTCTTCTCATTGG-ATC 364
Query 368 TGTCCCGTCTACAACAACACACGAAATACAACCTTTTTCTGGCTTATTCAACTGAGC-CT 426
|| |||| ||||||||| | ||| |||||||||| ||||||||||| || | || ||
Sbjct 365 TGGCCCGGCTACAACAAGAGACGCAATACAACCTCTTTCTGGCTTACTCGGTT-AGTTCT 423
Query 427 TTCGC-AGGTTCG-GCACT-GAGACCTTGTGGAGAGTGGATCTGGAGA-AATTTACT--- 479
|| | | | || || ||||| || || ||||||| ||||| | ||||||||
Sbjct 424 AAAGCCA--TACCAGCTCTTGAGAC-TTCTGCAGAGTGGCGCTGGA-ACAATTTACTAAA 479
Query 480 -T-GA-GACCAA-AAGGG-A-ATTTGTTCAGGACA-AGTGCAGCAGCAGTT-GTGAG-GT 530
| || ||| || ||| | | | ||| | | | | || || || || |||| ||
Sbjct 480 GTCGAAGACGAAGAAGACCAGAGTGGTTAAA-ATATA-TGAAGAAGAAGAAAGTGACCGT 537
Query 531 ATCTCCCATGTTTTATTGCAAATCTTGCTCTTACCAGGGCCAAAGCGTGGAGGGTT-TCA 589
| | ||||||||||| ||||| ||| || | | |||||||| || |||| |||
Sbjct 538 G-C-C--ATGTTTTATTGTAAATCGTGCGATTTCGATTGCCAAAGCTTG-AGGGAACTCA 592
Query 590 GGAGGCATGTCTCGAGTGGAAAGCATGCAGTGAAAGAGGTTACAAACCGTA-TACATCCA 648
||| |||| |||||||| || | |||||| || ||| || | || || | | | ||
Sbjct 593 GGAAGCATCTCTCGAGTAGATATCATGCAATGGGAGAACTTTTATGCCCTACTGC-TACA 651
Query 649 GAACTTGACTATT-TGACGAGGACGTGGGCAAAGAACTACACTGCGAAGCCTGAGTACGC 707
||| || || | | |||| || ||||| || ||||| | | || |||||||| |||||
Sbjct 652 GAAATTT-CTCCTGTAACGATGAAGTGGGGAAGGAACTTCCCGGCCAAGCCTGAATACGC 710
Query 708 GACAGCTCCAATAGTGGTGTGGTGGGACAT-GAAGGACTGTCCGATTCCAGAGGGTTATG 766
|| ||| ||| |||||| ||||||||| | ||||||||||||||| ||||||||||
Sbjct 711 CACGGCTAAAATTCTGGTGTTGTGGGACATTGT-GGACTGTCCGATTCCCGAGGGTTATG 769
Query 767 ATGCTCGTCAGGTCCGTCCGAGTTTAGAAGGGGCGTTCAAGAAACTAGGCTACTCTGGTC 826
| | || || ||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 770 AAGTTCATCGGGTCCGTCCGAGTATAGAAGGGGCGTTCAAGAAACTAGGCTACTCTGGTC 829
Query 827 CTGTCTCCATCACCGGATGTGGCGACCACAACA-AAACCCCTGATCA-CATCCTGCGAGA 884
||||||||||||||| | ||||||||| | || ||||||||||||| | |||||||||
Sbjct 830 CTGTCTCCATCACCGCCTATGGCGACCA-ATCACAAACCCCTGATCATC-TCCTGCGAGG 887
Query 885 GCTCTCTTCCACTGGAGTCGATCTTGCACATTCCATCGAC-GAAGTCATATACAGTCGCA 943
|||||||||||||||||||| | || ||||| |||| || ||||||| ||||| | |
Sbjct 888 GCTCTCTTCCACTGGAGTCGCTGTTTCACATGCCATT-ACCGAAGTCAGATACAAAAGAA 946
Query 944 TGTTTATAA-ATATGAAGC-AGTGG-AA-AGCTCGTAATCCTCCTCCGGCTACAATCATG 999
||||| | || ||| | | ||| || | || |||||||||||| ||||||||||||
Sbjct 947 TGTTT-TCCGATTTGATTCGA-TGGCAATACCT--TAATCCTCCTCCAGCTACAATCATG 1002
Query 1000 CTCATATCCGATGGTGTGGTG-ATGATGTTCGAAAATT-TAATCGCC-GACTTACTACAA 1056
|||||||||||| | | | | || | ||| || || | | ||| | ||| | ||||
Sbjct 1003 CTCATATCCGATCATATAGAGGATTAC-TTCTCAACTTCTGTT-GCCAGTCTT-CAACAA 1059
Query 1057 -GA-G-ACGAAGTACAA---C--CTTTTTC-TGGCTTATTCGTACAGGCCTTAC-AAAAT 1106
| | | || || || | | | ||| |||||||||| | |||||| || |||||
Sbjct 1060 TGTTGTATTAAATATAAATACAACATGTTCCTGGCTTATTCATTTAGGCCT-ACCAAAAT 1118
Query 1107 GTCT-GTCCT-GCTCACTTCTGCAGAGTGGCTTTGGAAAAGCTTACTTGTTGCAGGTGtt 1164
|| | | ||| | |||| |||||||||||||| ||| |||||||||| | | |||||||
Sbjct 1119 GT-TAGCCCTCG-TCACCTCTGCAGAGTGGCTCTGGGAAAGCTTACT-G--GAAGGTGTT 1173
Query 1165 t-ttt-tC-TCCTCTC 1177
| ||| || |||||||
Sbjct 1174 TATTTGTCCTCCTCTC 1189
Score = 302 bits (163), Expect = 6e-81
Identities = 330/407 (81%), Gaps = 26/407 (6%)
Strand=Plus/Plus
Query 696 GCCTGAGTACGCGACAGCTCCAATAGTGGTGTGGTGGGACATGAAGGACTGTCCGATTCC 755
|||| | |||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 21 GCCTAAATACGCGACAGCTGAAATAGCGGTGTGGTGGGACATGAAGGACTGTCCGATTCC 80
Query 756 AGAGGGTTATGATGCTCGTCAGGTCCGTCCGAGTTTAGAAGGGGCGTTCAAGAAACTAGG 815
||||||||||| |||| || ||||||||||||| |||||||||||||||||||||||||
Sbjct 81 CGAGGGTTATGAAGCTCATCGGGTCCGTCCGAGTATAGAAGGGGCGTTCAAGAAACTAGG 140
Query 816 CTACTCTGGTCCTGTCTCCATCACCGGATGTGGCGACCACAACA-AAACCCCTGATCA-C 873
|||||||||||||||||||||||| | | ||||||||| |||| ||||||||||| | |
Sbjct 141 CTACTCTGGTCCTGTCTCCATCACTGCCTATGGCGACCA-AACACAAACCCCTGATAATC 199
Query 874 ATCCTGCGAGAGCTCTCTTCCACTGGAGTCGATCTTGCACATTCCATCGAC-GAA-GTCA 931
||||||||| ||||||||| ||||||||| || |||||||| |||| || ||| | ||
Sbjct 200 -TCCTGCGAGGGCTCTCTTCAACTGGAGTCCATGTTGCACATGCCATT-ACCGAAAG-CA 256
Query 932 TATACAG-TCGCATGT-TTATAAATATGAAGCAGTGGAAA-GCTCGTAATCCTCCTCCGG 988
|| | | || ||||| || | |||| | | ||| | | || || |||||||||||
Sbjct 257 CATGC-GCTCTCATGTATTCGGA-TATGGTGGAATGGCGACG-TCATATTCCTCCTCCGG 313
Query 989 CTACAATCATGCTCATATCCGATG-GTGTGGTG-ATGATGTTCGAAAATTTAATC-G-CC 1044
| ||||| ||| |||||||| || | |||| ||| | ||| | || ||| | ||
Sbjct 314 CGACAATGATGTTCATATCCAATCAG-GTGGACCATG-TCTTCTCA--TTGGATCTGGCC 369
Query 1045 -GACTTACTACAAGAGACG-AAGTACAACCTTTTTCTGGCTTATTCG 1089
| || || |||||||||| || |||||||| ||||||||||| |||
Sbjct 370 CGGCT-ACAACAAGAGACGCAA-TACAACCTCTTTCTGGCTTACTCG 414
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53059711285
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5