BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G62860.1
Length=1286
Score E
Sequences producing significant alignments: (Bits) Value
Ahg899272 jgi|Araly1|899272|Al_scaffold_0005_3238 1712 0.0
Ahg935752 jgi|Araly1|935752|scaffold_403740.1 697 0.0
> Ahg899272 jgi|Araly1|899272|Al_scaffold_0005_3238
Length=1047
Score = 1712 bits (927), Expect = 0.0
Identities = 1007/1047 (96%), Gaps = 0/1047 (0%)
Strand=Plus/Plus
Query 109 ATGATGAAGTTCAAGTTCCAGTACGAGGAGGAATACATCAAAAACTCGAGAGACGTTGAG 168
|||||||||||||||||| | ||||| ||||||||||| |||||||| |||| ||| |||
Sbjct 1 ATGATGAAGTTCAAGTTCGAATACGAAGAGGAATACATAAAAAACTCAAGAGGCGTAGAG 60
Query 169 TTGTTCGCTTGCAGATGGCTTCCTTCTTCTTCTCCCCGAGCTCTAGTCTTCCTCTGCCAT 228
||||||||||||||||| |||| |||||||||||||||||||||||||||||||| |||
Sbjct 61 CTGTTCGCTTGCAGATGGGTTCCCTCTTCTTCTCCCCGAGCTCTAGTCTTCCTCTGTCAT 120
Query 229 GGTTATGGAATGGAGTGCAGTAGCTTCATGAGAGAATGCGGAATACGGCTGGCATCAGCG 288
|||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 121 GGTTATGGGATGGAGTGCAGTAGCTTCATGAGAGAATGCGGAATACGGTTGGCATCAGCA 180
Query 289 GGATATGCAGTGTTTGGGATGGACTACGAGGGGCATGGTCGGTCCAAGGGTGCTCGTTGC 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GGATATGCAGTGTTTGGGATGGACTACGAGGGGCATGGTCGGTCCAAGGGTGCTCGTTGC 240
Query 349 TATATaaaaaaaTTCAGTAATATAGTAAATGACTGCTTTGACTATTACACATCCATCTCT 408
||||| ||||| |||||||| |||||||| ||||||| ||||||||||| | |||||||
Sbjct 241 TATATCAAAAAGTTCAGTAACATAGTAAACGACTGCTACGACTATTACACCTTCATCTCT 300
Query 409 GCACAAGAAGAATACAAAGAGAAAGGTAGATTTTTGTATGGAGAATCAATGGGAGGTGCA 468
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct 301 GCACAAGAAGAATACAAAGAGAAAGGTAAATTTTTGTATGGAGAATCAATGGGAGGCGCA 360
Query 469 GTTGCTTTGTTGCTTCACAAGAAAGATCCTTCTTTTTGGAACGGGGCTCTTCTCGTTGCT 528
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 361 GTTGCTTTGTTGCTTCACAAGAAAGATCCTTCTTTTTGGAACGGTGCTCTTCTCGTTGCT 420
Query 529 CCCATGTGTAAGATATCAGAGAAGGTGAAACCACACCCAGTAGTCATAAATCTACTAACG 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 CCCATGTGTAAGATATCAGAGAAGGTGAAACCACACCCAGTAGTCATAAATCTACTAACG 480
Query 589 AGAGTTGAAGATATTATACCAAAATGGAAGATAGTTCCTACAAAAGATGTTATCGATGCT 648
|||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 481 AGAGTTGAAGATATAATACCAAAATGGAAGATCGTTCCCACAAAAGATGTTATCGATGCT 540
Query 649 GCCTTCAAGGATCCGGTCAAGCGCGAAGAGATAAGGAACAACAAGCTGATATATCAAGAC 708
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 GCCTTCAAGGATCCAATCAAGCGCGAAGAGATAAGGAACAACAAGCTGATATATCAAGAC 600
Query 709 AAGCCAAGACTTAAAACCGCACTTGAAATGCTTAGAACGAGCATGGACCTTGAAGACACT 768
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 601 AAGCCAAGACTTAAAACCGCGCTTGAAATGCTTAGAACGAGCATGGACCTTGAAGACACT 660
Query 769 CTCCACGAGATCACATTGCCTTTCTTTGTCCTTCACGGTGAAGCAGACATTGTGACTGAT 828
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 CTCCACGAGATCACATTGCCTTTCTTTGTCCTTCACGGTGAAGCAGACATTGTGACTGAT 720
Query 829 CCAGAGATAAGCAAAGCCTTGTTCGAGAAGGCAAGCACACGCGACAAAACCATTAAACTT 888
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 721 CCAGAGATAAGCAAAGCCTTGTTCGAGAAGGCAAGCACACGCGACAAAACTATTAAGCTT 780
Query 889 TACCCAGGAATGTGGCATGGATTAACTTCTGGTGAGCCTGATGCTAACGTTGACCTCGTT 948
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 TACCCAGGCATGTGGCATGGATTAACTTCTGGTGAGCCTGATGCTAACGTTGACCTCGTT 840
Query 949 TTTGCTGACATTGTCAATTGGCTTGATGCTCGTACCGGCGACTCCGCTTCTCTGACAGTC 1008
||||||||||| ||||| |||||||||||||||||||| ||||| ||||||||||||||
Sbjct 841 TTTGCTGACATAGTCAACTGGCTTGATGCTCGTACCGGTGACTCGGCTTCTCTGACAGTT 900
Query 1009 ACTCCCGTACATGATTTTACCTCCAATGTTCAAAAGGTCGTTGACGGTGTTAGTAACGGT 1068
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 AATCCCGTACATGATTTTACCTCCAATGTTCAAAAGGTCGTTGACGGTGTTAGTAACGGT 960
Query 1069 CAAGGAAAATCTAAACGACCACAAGCTAGTCTCCTTTGTGGTTTAAATGGTGGTGGACGT 1128
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 CAAGGAAAATCTAAACGACCACAAGCTAGTCTCCTTTGTGGTTTAAATGGTGGTGGACGT 1020
Query 1129 CGTTTGGTCCATAGATCTTCTATGTAA 1155
|||||||||||||||||||||||||||
Sbjct 1021 CGTTTGGTCCATAGATCTTCTATGTAA 1047
> Ahg935752 jgi|Araly1|935752|scaffold_403740.1
Length=1087
Score = 697 bits (377), Expect = 0.0
Identities = 743/915 (81%), Gaps = 44/915 (5%)
Strand=Plus/Plus
Query 124 TTCCAGTACGAGGAGGAATACATCAA-AAA--CTCGAGAGACGTTGAGTTGTTCGCTTGC 180
||||| ||| | ||||||||||| || ||| |||||| | || ||||||||||| ||
Sbjct 36 TTCCAATACCACGAGGAATACAT-AAGAAATTCTCGAG-G-GGTAGAGTTGTTCGCATGT 92
Query 181 AGATGG----CTTC--CTTCTTCTTCTCCCCGAGCTCTAGTCTTCCTCTGCCATGGTTAT 234
|||||| | || |||| ||||||||| |||||| || ||||||||||||||||||
Sbjct 93 AGATGGATCCCATCATCTTCGTCTTCTCCCAAAGCTCTGGTTTTCCTCTGCCATGGTTAT 152
Query 235 GGAATGGAGTGCAGTAG-CTTCATGAGAGAATGCGGAATAC-GGCTGGCATCAGCGGGAT 292
||||||||||| || | || ||||| |||||||||||| | ||||||| ||||| ||||
Sbjct 153 GGAATGGAGTGTAG-CGACTCCATGAAAGAATGCGGAAT-CAGGCTGGCTTCAGCCGGAT 210
Query 293 ATGCAGTGTTTGGGATGGACTACGAGGGGCATGGTCGGTCCAAGGG-TGCTCGTTGCTAT 351
| || || ||||| |||||||| || || ||||| ||||| ||| | ||||||||||
Sbjct 211 ACGCGGTTTTTGGTATGGACTATGAAGGTCATGGAAGGTCCTTGGGAT-CTCGTTGCTAC 269
Query 352 ATaaaaaaaTTCAGTAATATAGTAAATGACTGCTT-TGACTATTACACATCCATCTCTGC 410
|| || || || |||| | || || || || || |||||| |||||||| || | |||
Sbjct 270 ATCAAGAAGTTTTCTAATGTTGTGAACGATTG-TTATGACTACTACACATCTATTTGTGC 328
Query 411 ACAAGAAGAATACAAAGAGAAAGGTAGATTTTTGTATGGAGAATCAATGGGAGGTGCAGT 470
||||| || |||| || ||||| ||||| |||||||||||||| ||||||||||||||
Sbjct 329 GCAAGAGGAGTACATGGACAAAGGCAGATTCTTGTATGGAGAATCCATGGGAGGTGCAGT 388
Query 471 TGCTTTGTTGCTTCACAAGAAAGATCCTTCT-TTTTGGAACGGGGCTC-TTCTCGTTGCT 528
|||| ||||||||||| |||||||||| | ||||||||||| || | |||| ||||||
Sbjct 389 CACTTTATTGCTTCACAAAAAAGATCCTT-TGTTTTGGAACGGCGC-CATTCTAGTTGCT 446
Query 529 CCCATGTGTAAGATATCAGAGAAGGTGAAACCACACCCAGTAGTCATAAATCTACTAACG 588
|| |||||||||||||| ||||||||||| |||||||| ||||| || || || ||||
Sbjct 447 CCTATGTGTAAGATATCTGAGAAGGTGAAGCCACACCCCGTAGTGATTAACCTGTTAACT 506
Query 589 AGAGTTGAAGATATTATACCAAAATGGAAGATAGTTCCTACAAAAGATGTTATCGATGCT 648
||||| ||||| || ||||| |||||||| |||||||| ||||||||||| || || |||
Sbjct 507 AGAGTGGAAGAAATCATACCGAAATGGAAAATAGTTCCAACAAAAGATGTGATTGACGCT 566
Query 649 GCCTTCAAGGATCC-GGTCAAGCGCGAAGAGATAAGGAACAACAAGCTGATATATCAAGA 707
|| |||||||| || |||||||| |||||| ||||||||||||||||||||||||||||
Sbjct 567 GCTTTCAAGGA-CCTCGTCAAGCGAGAAGAGGTAAGGAACAACAAGCTGATATATCAAGA 625
Query 708 CAAGCCAAGACTTAAAACCGCACTTGAAATGCTTAGAACGAGCATGGACCTTGAAGACAC 767
|||||| || || ||||| |||||||| ||||| || || |||||| |||| ||||||||
Sbjct 626 CAAGCCTAGGCTCAAAACAGCACTTGAGATGCTCAGGACAAGCATGAACCTCGAAGACAC 685
Query 768 TCTCCACGAGATCACATTGCCTTTCTTTGTCCTT-CACGGTGAAGCAGACATTGTGACTG 826
|||||||||||| ||| |||| |||||||| || ||||| |||||||| | ||||| |
Sbjct 686 TCTCCACGAGATAACAATGCCCTTCTTTGTA-TTACACGGAGAAGCAGATACAGTGACGG 744
Query 827 ATCCAGAGATAAGCAAAGC-CTTGTTCGAGAAGGCAAGCACACGCGACAAAAC-CATTAA 884
||||||||||||||||||| || || |||||| || |||||| | ||||| || | | ||
Sbjct 745 ATCCAGAGATAAGCAAAGCTCT-GTACGAGAAAGCTAGCACAAGGGACAAGACTC-TCAA 802
Query 885 ACTT-TACCCAGGAATGTGGCATGGAT-TAACTTCTGGTGAGCCTGA-TGCTAACGTTGA 941
|| || || || |||||||| | | | || || ||||||||||| || ||| || ||
Sbjct 803 G-TTGTATCCTGGGATGTGGCACGC-TCTGACGTCAGGTGAGCCTGACTG-TAATGTGGA 859
Query 942 CCTCGTTTTTGCTGACATTGTCAATTGGCTTGATGCT-CGTACCGGC-GACTCC-GCTTC 998
||| |||||||||||||| ||||||||||||| ||| || |||| | ||| || || ||
Sbjct 860 CCTTGTTTTTGCTGACATCATCAATTGGCTTGA-GCTTCGAACCG-CTGAC-CCAGCCTC 916
Query 999 TCTGACAGTCACTCC 1013
||| || ||||||||
Sbjct 917 TCTCACTGTCACTCC 931
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48072998337
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5