BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G62860.1 Length=1286 Score E Sequences producing significant alignments: (Bits) Value Ahg899272 jgi|Araly1|899272|Al_scaffold_0005_3238 1712 0.0 Ahg935752 jgi|Araly1|935752|scaffold_403740.1 697 0.0 > Ahg899272 jgi|Araly1|899272|Al_scaffold_0005_3238 Length=1047 Score = 1712 bits (927), Expect = 0.0 Identities = 1007/1047 (96%), Gaps = 0/1047 (0%) Strand=Plus/Plus Query 109 ATGATGAAGTTCAAGTTCCAGTACGAGGAGGAATACATCAAAAACTCGAGAGACGTTGAG 168 |||||||||||||||||| | ||||| ||||||||||| |||||||| |||| ||| ||| Sbjct 1 ATGATGAAGTTCAAGTTCGAATACGAAGAGGAATACATAAAAAACTCAAGAGGCGTAGAG 60 Query 169 TTGTTCGCTTGCAGATGGCTTCCTTCTTCTTCTCCCCGAGCTCTAGTCTTCCTCTGCCAT 228 ||||||||||||||||| |||| |||||||||||||||||||||||||||||||| ||| Sbjct 61 CTGTTCGCTTGCAGATGGGTTCCCTCTTCTTCTCCCCGAGCTCTAGTCTTCCTCTGTCAT 120 Query 229 GGTTATGGAATGGAGTGCAGTAGCTTCATGAGAGAATGCGGAATACGGCTGGCATCAGCG 288 |||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 121 GGTTATGGGATGGAGTGCAGTAGCTTCATGAGAGAATGCGGAATACGGTTGGCATCAGCA 180 Query 289 GGATATGCAGTGTTTGGGATGGACTACGAGGGGCATGGTCGGTCCAAGGGTGCTCGTTGC 348 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 GGATATGCAGTGTTTGGGATGGACTACGAGGGGCATGGTCGGTCCAAGGGTGCTCGTTGC 240 Query 349 TATATaaaaaaaTTCAGTAATATAGTAAATGACTGCTTTGACTATTACACATCCATCTCT 408 ||||| ||||| |||||||| |||||||| ||||||| ||||||||||| | ||||||| Sbjct 241 TATATCAAAAAGTTCAGTAACATAGTAAACGACTGCTACGACTATTACACCTTCATCTCT 300 Query 409 GCACAAGAAGAATACAAAGAGAAAGGTAGATTTTTGTATGGAGAATCAATGGGAGGTGCA 468 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| Sbjct 301 GCACAAGAAGAATACAAAGAGAAAGGTAAATTTTTGTATGGAGAATCAATGGGAGGCGCA 360 Query 469 GTTGCTTTGTTGCTTCACAAGAAAGATCCTTCTTTTTGGAACGGGGCTCTTCTCGTTGCT 528 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 361 GTTGCTTTGTTGCTTCACAAGAAAGATCCTTCTTTTTGGAACGGTGCTCTTCTCGTTGCT 420 Query 529 CCCATGTGTAAGATATCAGAGAAGGTGAAACCACACCCAGTAGTCATAAATCTACTAACG 588 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 421 CCCATGTGTAAGATATCAGAGAAGGTGAAACCACACCCAGTAGTCATAAATCTACTAACG 480 Query 589 AGAGTTGAAGATATTATACCAAAATGGAAGATAGTTCCTACAAAAGATGTTATCGATGCT 648 |||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||| Sbjct 481 AGAGTTGAAGATATAATACCAAAATGGAAGATCGTTCCCACAAAAGATGTTATCGATGCT 540 Query 649 GCCTTCAAGGATCCGGTCAAGCGCGAAGAGATAAGGAACAACAAGCTGATATATCAAGAC 708 |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 541 GCCTTCAAGGATCCAATCAAGCGCGAAGAGATAAGGAACAACAAGCTGATATATCAAGAC 600 Query 709 AAGCCAAGACTTAAAACCGCACTTGAAATGCTTAGAACGAGCATGGACCTTGAAGACACT 768 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 601 AAGCCAAGACTTAAAACCGCGCTTGAAATGCTTAGAACGAGCATGGACCTTGAAGACACT 660 Query 769 CTCCACGAGATCACATTGCCTTTCTTTGTCCTTCACGGTGAAGCAGACATTGTGACTGAT 828 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 661 CTCCACGAGATCACATTGCCTTTCTTTGTCCTTCACGGTGAAGCAGACATTGTGACTGAT 720 Query 829 CCAGAGATAAGCAAAGCCTTGTTCGAGAAGGCAAGCACACGCGACAAAACCATTAAACTT 888 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| Sbjct 721 CCAGAGATAAGCAAAGCCTTGTTCGAGAAGGCAAGCACACGCGACAAAACTATTAAGCTT 780 Query 889 TACCCAGGAATGTGGCATGGATTAACTTCTGGTGAGCCTGATGCTAACGTTGACCTCGTT 948 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 781 TACCCAGGCATGTGGCATGGATTAACTTCTGGTGAGCCTGATGCTAACGTTGACCTCGTT 840 Query 949 TTTGCTGACATTGTCAATTGGCTTGATGCTCGTACCGGCGACTCCGCTTCTCTGACAGTC 1008 ||||||||||| ||||| |||||||||||||||||||| ||||| |||||||||||||| Sbjct 841 TTTGCTGACATAGTCAACTGGCTTGATGCTCGTACCGGTGACTCGGCTTCTCTGACAGTT 900 Query 1009 ACTCCCGTACATGATTTTACCTCCAATGTTCAAAAGGTCGTTGACGGTGTTAGTAACGGT 1068 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 901 AATCCCGTACATGATTTTACCTCCAATGTTCAAAAGGTCGTTGACGGTGTTAGTAACGGT 960 Query 1069 CAAGGAAAATCTAAACGACCACAAGCTAGTCTCCTTTGTGGTTTAAATGGTGGTGGACGT 1128 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 961 CAAGGAAAATCTAAACGACCACAAGCTAGTCTCCTTTGTGGTTTAAATGGTGGTGGACGT 1020 Query 1129 CGTTTGGTCCATAGATCTTCTATGTAA 1155 ||||||||||||||||||||||||||| Sbjct 1021 CGTTTGGTCCATAGATCTTCTATGTAA 1047 > Ahg935752 jgi|Araly1|935752|scaffold_403740.1 Length=1087 Score = 697 bits (377), Expect = 0.0 Identities = 743/915 (81%), Gaps = 44/915 (5%) Strand=Plus/Plus Query 124 TTCCAGTACGAGGAGGAATACATCAA-AAA--CTCGAGAGACGTTGAGTTGTTCGCTTGC 180 ||||| ||| | ||||||||||| || ||| |||||| | || ||||||||||| || Sbjct 36 TTCCAATACCACGAGGAATACAT-AAGAAATTCTCGAG-G-GGTAGAGTTGTTCGCATGT 92 Query 181 AGATGG----CTTC--CTTCTTCTTCTCCCCGAGCTCTAGTCTTCCTCTGCCATGGTTAT 234 |||||| | || |||| ||||||||| |||||| || |||||||||||||||||| Sbjct 93 AGATGGATCCCATCATCTTCGTCTTCTCCCAAAGCTCTGGTTTTCCTCTGCCATGGTTAT 152 Query 235 GGAATGGAGTGCAGTAG-CTTCATGAGAGAATGCGGAATAC-GGCTGGCATCAGCGGGAT 292 ||||||||||| || | || ||||| |||||||||||| | ||||||| ||||| |||| Sbjct 153 GGAATGGAGTGTAG-CGACTCCATGAAAGAATGCGGAAT-CAGGCTGGCTTCAGCCGGAT 210 Query 293 ATGCAGTGTTTGGGATGGACTACGAGGGGCATGGTCGGTCCAAGGG-TGCTCGTTGCTAT 351 | || || ||||| |||||||| || || ||||| ||||| ||| | |||||||||| Sbjct 211 ACGCGGTTTTTGGTATGGACTATGAAGGTCATGGAAGGTCCTTGGGAT-CTCGTTGCTAC 269 Query 352 ATaaaaaaaTTCAGTAATATAGTAAATGACTGCTT-TGACTATTACACATCCATCTCTGC 410 || || || || |||| | || || || || || |||||| |||||||| || | ||| Sbjct 270 ATCAAGAAGTTTTCTAATGTTGTGAACGATTG-TTATGACTACTACACATCTATTTGTGC 328 Query 411 ACAAGAAGAATACAAAGAGAAAGGTAGATTTTTGTATGGAGAATCAATGGGAGGTGCAGT 470 ||||| || |||| || ||||| ||||| |||||||||||||| |||||||||||||| Sbjct 329 GCAAGAGGAGTACATGGACAAAGGCAGATTCTTGTATGGAGAATCCATGGGAGGTGCAGT 388 Query 471 TGCTTTGTTGCTTCACAAGAAAGATCCTTCT-TTTTGGAACGGGGCTC-TTCTCGTTGCT 528 |||| ||||||||||| |||||||||| | ||||||||||| || | |||| |||||| Sbjct 389 CACTTTATTGCTTCACAAAAAAGATCCTT-TGTTTTGGAACGGCGC-CATTCTAGTTGCT 446 Query 529 CCCATGTGTAAGATATCAGAGAAGGTGAAACCACACCCAGTAGTCATAAATCTACTAACG 588 || |||||||||||||| ||||||||||| |||||||| ||||| || || || |||| Sbjct 447 CCTATGTGTAAGATATCTGAGAAGGTGAAGCCACACCCCGTAGTGATTAACCTGTTAACT 506 Query 589 AGAGTTGAAGATATTATACCAAAATGGAAGATAGTTCCTACAAAAGATGTTATCGATGCT 648 ||||| ||||| || ||||| |||||||| |||||||| ||||||||||| || || ||| Sbjct 507 AGAGTGGAAGAAATCATACCGAAATGGAAAATAGTTCCAACAAAAGATGTGATTGACGCT 566 Query 649 GCCTTCAAGGATCC-GGTCAAGCGCGAAGAGATAAGGAACAACAAGCTGATATATCAAGA 707 || |||||||| || |||||||| |||||| |||||||||||||||||||||||||||| Sbjct 567 GCTTTCAAGGA-CCTCGTCAAGCGAGAAGAGGTAAGGAACAACAAGCTGATATATCAAGA 625 Query 708 CAAGCCAAGACTTAAAACCGCACTTGAAATGCTTAGAACGAGCATGGACCTTGAAGACAC 767 |||||| || || ||||| |||||||| ||||| || || |||||| |||| |||||||| Sbjct 626 CAAGCCTAGGCTCAAAACAGCACTTGAGATGCTCAGGACAAGCATGAACCTCGAAGACAC 685 Query 768 TCTCCACGAGATCACATTGCCTTTCTTTGTCCTT-CACGGTGAAGCAGACATTGTGACTG 826 |||||||||||| ||| |||| |||||||| || ||||| |||||||| | ||||| | Sbjct 686 TCTCCACGAGATAACAATGCCCTTCTTTGTA-TTACACGGAGAAGCAGATACAGTGACGG 744 Query 827 ATCCAGAGATAAGCAAAGC-CTTGTTCGAGAAGGCAAGCACACGCGACAAAAC-CATTAA 884 ||||||||||||||||||| || || |||||| || |||||| | ||||| || | | || Sbjct 745 ATCCAGAGATAAGCAAAGCTCT-GTACGAGAAAGCTAGCACAAGGGACAAGACTC-TCAA 802 Query 885 ACTT-TACCCAGGAATGTGGCATGGAT-TAACTTCTGGTGAGCCTGA-TGCTAACGTTGA 941 || || || || |||||||| | | | || || ||||||||||| || ||| || || Sbjct 803 G-TTGTATCCTGGGATGTGGCACGC-TCTGACGTCAGGTGAGCCTGACTG-TAATGTGGA 859 Query 942 CCTCGTTTTTGCTGACATTGTCAATTGGCTTGATGCT-CGTACCGGC-GACTCC-GCTTC 998 ||| |||||||||||||| ||||||||||||| ||| || |||| | ||| || || || Sbjct 860 CCTTGTTTTTGCTGACATCATCAATTGGCTTGA-GCTTCGAACCG-CTGAC-CCAGCCTC 916 Query 999 TCTGACAGTCACTCC 1013 ||| || |||||||| Sbjct 917 TCTCACTGTCACTCC 931 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 48072998337 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5