BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G62870.1
Length=1048
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486792 jgi|Araly1|486792|fgenesh2_kg.5__2784__AT3G62870.1 1328 0.0
Ahg483941 jgi|Araly1|483941|fgenesh2_kg.4__3001__AT2G47610.1 878 0.0
Ahg354286 jgi|Araly1|354286|fgenesh1_pg.C_scaffold_7001459 436 1e-121
Ahg949242 jgi|Araly1|949242|scaffold_801129.1 222 4e-57
Ahg926932 jgi|Araly1|926932|scaffold_202493.1 207 1e-52
> Ahg486792 jgi|Araly1|486792|fgenesh2_kg.5__2784__AT3G62870.1
Length=855
Score = 1328 bits (719), Expect = 0.0
Identities = 786/819 (96%), Gaps = 1/819 (0%)
Strand=Plus/Plus
Query 32 CGCTCTTGCTCTCAGCCGTCTGTCTTACCTCCAGAAGTCGACGACAACAATGGCACCGAA 91
||||||||||||| |||||||||| ||||||||||| ||| |||| ||||||||||| ||
Sbjct 1 CGCTCTTGCTCTCCGCCGTCTGTC-TACCTCCAGAAATCGTCGACTACAATGGCACCCAA 59
Query 92 GAAGGGAGTTAAAGTGGCTTCAAAGAAGAAGCCGGAGAAAGTTACCAACCCATTGTTTGA 151
||| ||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 60 GAAAGGAGTCAAAGTAGCTTCCAAGAAGAAGCCGGAGAAAGTTACCAACCCATTGTTTGA 119
Query 152 GAGACGCCCAAAGCAATTCGGTATTGGTGGCGCTTTGCCTCCTAAGAAGGATCTTTCTCG 211
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 120 GAGACGCCCAAAGCAATTCGGTATCGGTGGTGCTTTGCCTCCTAAGAAGGATCTTTCTCG 179
Query 212 TTACATCAAATGGCCTAAGTCAATCCGTCTTCAAAGGCAGAAGCGTATCCTTAAGCAGAG 271
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 180 TTACATCAAATGGCCTAAGTCCATCCGTCTTCAAAGGCAGAAGCGTATCCTTAAGCAGAG 239
Query 272 GTTGAAGGTTCCTCCAGCTCTTAACCAGTTCACCAAGACCCTTGATAAGAATCTCGCCAC 331
|||||||||||||||||||||||||||||| |||||||| || |||||||||||||| ||
Sbjct 240 GTTGAAGGTTCCTCCAGCTCTTAACCAGTTTACCAAGACTCTCGATAAGAATCTCGCAAC 299
Query 332 CAGCCTCTTCAAGATTCTTCTGAAGTATAGGCCAGAGGACAAAGCCGCAAAGAAGGAACG 391
||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| ||
Sbjct 300 CAGCCTCTTCAAGATTCTTTTGAAGTATAGGCCAGAGGACAAAGCTGCAAAGAAGGATCG 359
Query 392 CCTTTTGAACAAGGCTCAAGCTGAGGCAGAAGGAAAGCCTGCTGAATCCAAGAAGCCCAT 451
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 CCTTTTGAAGAAGGCTCAAGCTGAGGCAGAAGGAAAGCCTGCTGAATCCAAGAAGCCCAT 419
Query 452 TGTTGTTAAGTATGGTCTCAACCATGTGACTTACCTCATCGAGCAGAACAAGGCACAGCT 511
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 420 TGTTGTCAAGTATGGTCTCAACCATGTCACTTACCTCATCGAGCAGAACAAGGCACAGCT 479
Query 512 TGTGGTCATTGCACACGATGTTGACCCTATCGAGTTGGTGGTCTGGTTACCTGCACTCTG 571
||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| ||
Sbjct 480 TGTGGTCATTGCACACGATGTTGACCCTATCGAGTTGGTCGTCTGGCTACCTGCACTGTG 539
Query 572 CAGGAAAATGGAAGTCCCTTACTGCATTGTTAAGGGAAAATCTCGTCTTGGAGCGGTCGT 631
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 540 CAGGAAAATGGAAGTCCCTTACTGCATTGTTAAGGGGAAATCTCGTCTTGGAGCGGTTGT 599
Query 632 TCACCAGAAGACTGCTGCTGCCTTGTGCTTGACCACTGTCAAGAACGAGGACAAGCTTGA 691
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 TCACCAGAAGACTGCTGCTGCCTTGTGCTTGACCACTGTCAAGAACGAGGACAAGCTTGA 659
Query 692 GTTCAGCAAAATCCTCGAGGCCATCAAGGCTAACTTCAACGACAAGTACGAGGAGTACAG 751
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 660 GTTCAGCAAAATCCTCGAGGCTATCAAGGCTAACTTCAACGACAAGTACGAGGAGTACAG 719
Query 752 GAAGAAGTGGGGAGGTGGCATAATGGGATCCAAGTCTCAAGCCAAGACCAAAGCTAAGGA 811
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 720 GAAGAAGTGGGGAGGTGGCATAATGGGATCTAAGTCTCAAGCCAAGACCAAAGCTAAGGA 779
Query 812 GAGGGTTATTGCTAAGGAGGCTGCCCAGAGAATGAACTA 850
||||||| ||||||| ||||||||||||||| |||||||
Sbjct 780 GAGGGTTCTTGCTAAAGAGGCTGCCCAGAGATTGAACTA 818
Score = 62.1 bits (33), Expect = 8e-09
Identities = 35/36 (97%), Gaps = 0/36 (0%)
Strand=Plus/Plus
Query 866 GTTCTCTGCTATGAAACATATGATAATGGTTTTGTT 901
|||||||||||||||||||||||||||| |||||||
Sbjct 820 GTTCTCTGCTATGAAACATATGATAATGTTTTTGTT 855
> Ahg483941 jgi|Araly1|483941|fgenesh2_kg.4__3001__AT2G47610.1
Length=954
Score = 878 bits (475), Expect = 0.0
Identities = 676/774 (87%), Gaps = 9/774 (1%)
Strand=Plus/Plus
Query 71 GACGACAACAATGGCACCGAAGAAGGGAGTTAAAGTGGCTTCAAAGAAGAAG-C--CGGA 127
|||||| |||||||| |||||||| |||||||| || ||| | ||||||||| | |||
Sbjct 88 GACGACGACAATGGCCCCGAAGAAAGGAGTTAAGGTAGCTGCCAAGAAGAAGACGGAGGA 147
Query 128 GAAAGTTACCAACCCAT-TGTTTGAGA-GACGCCCAAAGCAATTCGGTATTGGTGGCGCT 185
||||||||| ||||| | | || |||| || | || |||||||||||||||||||| |||
Sbjct 148 GAAAGTTACAAACCC-TCTATTCGAGAGGA-GGCCTAAGCAATTCGGTATTGGTGGAGCT 205
Query 186 TTGCCTCCTAAGAAGGATCTTTCTCGTTACATCAAATGGCCTAAGTCAATCCGTCTTCAA 245
|||||||||||||||||||| ||||| |||||||||||||| || || ||||||||||||
Sbjct 206 TTGCCTCCTAAGAAGGATCTCTCTCGCTACATCAAATGGCCCAAATCTATCCGTCTTCAA 265
Query 246 AGGCAGAAGCGTATCCTTAAGCAGAGGTTGAAGGTTCCTCCAGCTCTTAACCAGTTCACC 305
||||| ||| | ||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 266 AGGCAAAAGAGGATCCTTAAGCAGAGGTTGAAGGTCCCTCCAGCTCTTAACCAATTCACC 325
Query 306 AAGACCCTTGATAAGAATCTCGCCACCAGCCTCTTCAAGATTCTTCTGAAGTATAGGCCA 365
||||| ||||| |||||||| || ||||||||||||||| | ||||| ||||| ||||||
Sbjct 326 AAGACTCTTGACAAGAATCTTGCTACCAGCCTCTTCAAGGTCCTTCTCAAGTACAGGCCA 385
Query 366 GAGGACAAAGCCGCAAAGAAGGAACGCCTTTTGAACAAGGCTCAAGCTGAGGCAGAAGGA 425
|| |||||||| || ||||| || |||||| | || ||||| |||||||| || || |||
Sbjct 386 GAAGACAAAGCTGCCAAGAAAGACCGCCTTGTCAAGAAGGCCCAAGCTGAAGCTGAGGGA 445
Query 426 AAGCCTGCTGAATCCAAGAAGCCCATTGTTGTTAAGTATGGTCTCAACCATGTGACTTAC 485
|||||| | || || |||||||||||||| || || || || |||||||||||||| |||
Sbjct 446 AAGCCTTCCGAGTCTAAGAAGCCCATTGTAGTCAAATACGGCCTCAACCATGTGACCTAC 505
Query 486 CTCATCGAGCAGAACAAGGCACAGCTTGTGGTCATTGCACACGATGTTGACCCTATCGAG 545
||||| |||||||||||||| || ||||| |||||||| || ||||| ||||| || |||
Sbjct 506 CTCATTGAGCAGAACAAGGCTCAACTTGTTGTCATTGCTCATGATGTCGACCCAATTGAG 565
Query 546 TTGGTGGTCTGGTTACCTGCACTCTGCAGGAAAATGGAAGTCCCTTACTGCATTGTTAAG 605
||||| |||||||| ||||| ||||||||||| ||||||||||| ||||||||||| |||
Sbjct 566 TTGGTTGTCTGGTTGCCTGCTCTCTGCAGGAAGATGGAAGTCCCCTACTGCATTGTCAAG 625
Query 606 GGAAAATCTCGTCTTGGAGCGGTCGTTCACCAGAAGACTGCTGC-TGCCTTGTGCTTGAC 664
|| |||||||||||||| ||||| |||||||| ||||||||||| || |||||| |||||
Sbjct 626 GGCAAATCTCGTCTTGGCGCGGTTGTTCACCAAAAGACTGCTGCTTG-CTTGTGTTTGAC 684
Query 665 CACTGTCAAGAACGAGGACAAGCTTGAGTTCAGCAAAATCCTCGAGGCCATCAAGGCTAA 724
|||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||
Sbjct 685 CACTGTCAAGAACGAGGACAAGCTAGAGTTCAGCAAAATCCTAGAGGCTATCAAGGCTAA 744
Query 725 CTTCAACGACAAGTACGAGGAGTACAGGAAGAAGTGGGGAGGTGGCATAATGGGATCCAA 784
|||||| |||||||||||||||||||||||||| |||||||| |||||||||||||| ||
Sbjct 745 CTTCAATGACAAGTACGAGGAGTACAGGAAGAAATGGGGAGGAGGCATAATGGGATCAAA 804
Query 785 GTCTCAAGCCAAGACCAAAGCTAAGGAGAGGGTTATTGCTAAGGAGGCTGCCCA 838
|||||| || |||||||| || ||||| || ||| |||| ||||||||||||||
Sbjct 805 GTCTCAGGCTAAGACCAAGGCCAAGGAAAGAGTTCTTGCAAAGGAGGCTGCCCA 858
> Ahg354286 jgi|Araly1|354286|fgenesh1_pg.C_scaffold_7001459
Length=588
Score = 436 bits (236), Expect = 1e-121
Identities = 421/509 (83%), Gaps = 18/509 (4%)
Strand=Plus/Plus
Query 342 AAGATTCTTCTGAAGTATAGGCCAGAGGACAAAGCCGCAAAGAAGGAACGCCTTTTGAAC 401
|||||||| || ||||||||||| ||||||||||| || |||||||| || ||| | ||
Sbjct 79 AAGATTCTCCTCAAGTATAGGCCTGAGGACAAAGCAGCCAAGAAGGAGCGTCTTCTCAAG 138
Query 402 AAGGCTCAAG-CTGAGGCAGAAGGAAAGCCTGCTGAATCCAAGAAGCCCATTGTTGTTAA 460
| ||||| || ||||||| || ||||| ||| |||| || ||||||||||||||||| ||
Sbjct 139 ACGGCTC-AGTCTGAGGCTGAGGGAAAACCTTCTGAGTCAAAGAAGCCCATTGTTGTCAA 197
Query 461 GTATGGTCTCAACCATGTGACTTACCTCATCGAGCAGA-ACAAGGCACAGCTTG-TGGTC 518
|||||||||||||||||||||||||||||||||||||| | |||||||| ||| ||||
Sbjct 198 GTATGGTCTCAACCATGTGACTTACCTCATCGAGCAGAGA-AAGGCACAA-TTGGTGGTG 255
Query 519 ATTGCACACGATGTTGACCCTATCGAGTTGGTGGTCTGGTTACCTGCACTCTGCAGGAAA 578
||||| || ||||| || || || |||||||| |||||| | || || | ||||||| |
Sbjct 256 ATTGCTCATGATGTGGATCCGATTGAGTTGGTCGTCTGGCTGCCCACATTGTGCAGGATA 315
Query 579 ATGGAAGTCCCTTACTGCATTGTTAAGGGAAAATCTCGTCTTGG-AGCGGTCGTTCACCA 637
|||||||| |||||||||||||| ||||| ||||| || |||| || | | || |||||
Sbjct 316 ATGGAAGTTCCTTACTGCATTGTCAAGGGGAAATCACGA-TTGGGAGTGATTGTCCACCA 374
Query 638 GAAGACT-GC-TGCT-GCCTTGTGCTTGACCACTGTCAAGAACGAGGACAAGCTTGAGTT 694
||| | | || | || || ||||| |||||||| || ||||| ||||| ||||| || ||
Sbjct 375 GAAAA-TAGCAT-CTTGC-TTGTGTTTGACCACAGTGAAGAATGAGGATAAGCTGGAATT 431
Query 695 CAGCAAAATCCTCGAGGCCATCAAGGCTAACTTCAACGACAAGTACGA-GGAGTA-CAGG 752
|||||||||||| |||||||| ||||| |||||||| |||||||| | |||| | | |
Sbjct 432 CAGCAAAATCCTAGAGGCCATAAAGGCAAACTTCAATGACAAGTAT-ATGGAGGAGC-GT 489
Query 753 AAGAAGTGGGGAGGTGGCATAATGGGATCCAAGTCTCAAGCCAAGACCAAAGCTAAGGAG 812
||||||||||||||||| || ||||||||||| || || |||||||| || |||||||||
Sbjct 490 AAGAAGTGGGGAGGTGGGATTATGGGATCCAAATCGCAGGCCAAGACTAAGGCTAAGGAG 549
Query 813 AGGGTTATTGCTAAGGAGGCTGCCCAGAG 841
||| || | || ||||||||||| |||||
Sbjct 550 AGGATTCTAGCCAAGGAGGCTGCTCAGAG 578
> Ahg949242 jgi|Araly1|949242|scaffold_801129.1
Length=262
Score = 222 bits (120), Expect = 4e-57
Identities = 159/177 (90%), Gaps = 5/177 (3%)
Strand=Plus/Plus
Query 630 GTTCACCAGAAGACTGCTGC-TGCCTTGTGCTTGACCACTGTCAAGAACGAGGACAAGCT 688
||||| || ||||||||||| || |||||| |||||||||||||||||||||||||||||
Sbjct 84 GTTCAGCAAAAGACTGCTGCTTG-CTTGTGTTTGACCACTGTCAAGAACGAGGACAAGCT 142
Query 689 TGAGTTCAGCAAAATCCTCGAGGCCATCAAGGCTAACTTCAACGACAAGTACGAGGAGTA 748
||||||||||||||||| ||||| |||||||| |||||||| ||||||||| |||||||
Sbjct 143 AGAGTTCAGCAAAATCCTAGAGGCTATCAAGGCCAACTTCAATGACAAGTACAAGGAGTA 202
Query 749 CAGGAAGAAGTGGGGAGGTGGCATAATGGGATCC-A--AGTCTCAAGCCAAGACCAA 802
||||||||| |||||||| |||||||||||||| | |||||||||| ||||||||
Sbjct 203 CAGGAAGAAATGGGGAGGAGGCATAATGGGATCATATTAGTCTCAAGCGAAGACCAA 259
> Ahg926932 jgi|Araly1|926932|scaffold_202493.1
Length=283
Score = 207 bits (112), Expect = 1e-52
Identities = 159/181 (88%), Gaps = 5/181 (3%)
Strand=Plus/Plus
Query 626 GGTCGTTCACCAGAAGACTGCTGC-TGCCTTGTGCTTGACCACTGTCAAGAACGAGGACA 684
||| ||||| || ||||||||||| || |||||| |||||||||||||||||||||||||
Sbjct 101 GGTTGTTCAGCAAAAGACTGCTGCTTG-CTTGTGTTTGACCACTGTCAAGAACGAGGACA 159
Query 685 AGCTTGAGTTCAGCAAAATCCTCGAGGCCATCAAGGCTAACTTCAACGACAAGTACGAGG 744
|||| |||||||||||| |||| ||||| |||||||| |||||||| ||||||||| |||
Sbjct 160 AGCTAGAGTTCAGCAAATTCCTAGAGGCTATCAAGGCCAACTTCAATGACAAGTACAAGG 219
Query 745 AGTACAGGAAGAAGTGGGGAGGTGGCATAATGGGATCC-A--AGTCTCAAGCCAAGACCA 801
||||||||||||| ||| |||| |||||||||||||| | ||||||| || |||||||
Sbjct 220 AGTACAGGAAGAAATGGAGAGGAGGCATAATGGGATCATATTAGTCTCAGGCGAAGACCA 279
Query 802 A 802
|
Sbjct 280 A 280
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38999744091
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5