BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G62880.1
Length=814
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486794 jgi|Araly1|486794|fgenesh2_kg.5__2786__AT3G62880.1 767 0.0
> Ahg486794 jgi|Araly1|486794|fgenesh2_kg.5__2786__AT3G62880.1
Length=675
Score = 767 bits (415), Expect = 0.0
Identities = 520/567 (92%), Gaps = 21/567 (4%)
Strand=Plus/Plus
Query 42 AATTTTGCAGAGATGGAGGAAGAATTGCTCTCCGCCGTGCCGTGCTCTTCCCTAACCGTC 101
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1 AATTTTGCAGAGATGGAGGAAGAATTGCTCTCCGCCGTGCCGTGCTCTTCCCTCACCGTT 60
Query 102 GAGTCAGTTCTCCGTGTCGCGACGGCCGGTGGATTATATGGGTTATGCGCCGGACCTCGT 161
|| |||||| |||| ||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 61 GAATCAGTTATCCGCGTCGCGACGGCCGGTGGATTATACGGGTTGTGCGCCGGACCTCGT 120
Query 162 GACGCTCGTAAAATAGGTTTAAGCGGCGTTTCTCAGGCTTCCTTTGTGGCGAAATCCATT 221
|||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 121 GACGCTCGTAAAATAGGTTTAAGCGGCGCATCTCAAGCTTCCTTTGTGGCGAAATCCATT 180
Query 222 GGCAGATTCGGATTTCAATGCGGTCTTGTAAGTGGTGTGTTTACTATGACACATTGTGGG 281
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 181 GGCAGATTCGGATTTCAATGCGGTCTTGTAAGTGGTGTGTTTACTATGACCCATTGTGGG 240
Query 282 CTTCAACGATATCGAGGCAAGAATGATTGGGTGAATGCTTTGGTAGGAGGAGCTGTGGCG 341
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CTTCAACGATATCGAGGCAAGAATGATTGGGTGAATGCTTTGGTAGGAGGAGCTGTGGCT 300
Query 342 GGAGCAGCTGTTGCCATTAGCACAAGAAACTGGACACAGGTTGTTGGCATGGCTGGCCTC 401
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GGAGCAGCTGTTGCTATTAGCACAAGAAACTGGACACAGGTTGTTGGCATGGCTGGCCTC 360
Query 402 GTCTCTGCTTTTAGTGTTTTGGCTAATTGCACCAGGACAGAAAACCCAAACAACACTAAT 461
||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 361 GTCTCTGCTTTCAGTGTTTTGGCTAATTGCACCAGGACAGAG--CCCAAACAACAATAAT 418
Query 462 TAAGGTCTTTGACAAGTCCATTCA--A-GAAACTGTATGGAATTGGAACTTGAAGATCAA 518
||||||||| |||||||| ||||| | || ||||| | |||||||| ||||||||||
Sbjct 419 TAAGGTCTTAGACAAGTC-ATTCATCAAGACACTGTGT--AATTGGAAAGTGAAGATCAA 475
Query 519 TACA-CTGACTCTCCGGTTCGATCCTATTTAGTTGGCTGAACCCGTGGATGGTTCTTCTT 577
||| | |||||||| | | | | || ||||||||||||| ||||||||| | | ||
Sbjct 476 TACCGC-GACTCTCC--T-C--T--T-TT-AGTTGGCTGAACCGGTGGATGGT-CGT-TT 523
Query 578 TTCTATAGACCACACTTTTGGTCTTGT 604
|||||| ||||||| ||||||||||||
Sbjct 524 TTCTATGGACCACAATTTTGGTCTTGT 550
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30078981513
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5