BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G62890.1
Length=1823
Score E
Sequences producing significant alignments: (Bits) Value
Ahg899275 jgi|Araly1|899275|Al_scaffold_0005_3241 2606 0.0
Ahg311964 jgi|Araly1|311964|fgenesh1_pm.C_scaffold_1000744 65.8 1e-09
> Ahg899275 jgi|Araly1|899275|Al_scaffold_0005_3241
Length=1719
Score = 2606 bits (1411), Expect = 0.0
Identities = 1623/1726 (94%), Gaps = 11/1726 (1%)
Strand=Plus/Plus
Query 12 ATGAGCAAGGGGGCGGCAATAATAGCTTATGCAAATCCCATCTTTCATATTCGACATCTA 71
|||||||| || |||||| ||| ||||||||||||| || ||||||||||| ||||||
Sbjct 1 ATGAGCAA---GGAGGCAATTATATCTTATGCAAATCCGATTTTTCATATTCGGCATCTA 57
Query 72 AAGCTTGAATCTTTCTTGTGGAACATCATCATTCGTGCCATTGTTCACAATGTTTCGTCG 131
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 58 AAGCTTGAATCTTTCGTATGGAACATCATCATTCGTGCCATTGTTCACAATGTTTCGCCG 117
Query 132 CCTCAACGACATTCTCCGATCTCAGTCTACCTCCGTATGCGCAACCATCGCGTCTCTCCC 191
|||||||||||||||||||||||||||||| ||||||||||| ||||| |||| ||||
Sbjct 118 CCTCAACGACATTCTCCGATCTCAGTCTACTTCCGTATGCGCCACCATTTCGTCAGTCCC 177
Query 192 GATTTTCATACCTTTCCGTTTCTTCTCCCTTCTTTCCACAATCCGCTTCATCTTCCTCTT 251
||||||||||| |||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 178 GATTTTCATACTTTTCCGTTTCTTCTCCCTTCTTTCCACAATCCAATCCATCTTCCTCTT 237
Query 252 GGGCAACGAACTCATGCTCAGATTCTTCTTTTTGGACTTGACAAAGACCCATTTGTCCGA 311
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 GGACAACGAACTCATGCTCAGATTCTTCTTTTTGGACTTGACAAAGACCCATTTGTCCGG 297
Query 312 ACTTCACTGCTCAACATGTATTCTTCCTGTGGCGACTTGAGATCAGCTCAGCG-AGTTTT 370
||||| |||||||| ||||||||||| ||||||||||| || ||||||| ||| | ||||
Sbjct 298 ACTTCTCTGCTCAATATGTATTCTTCTTGTGGCGACTTAAGCTCAGCTCTGCGTA-TTTT 356
Query 371 CGATGACTCGGGCTCGAAGGATTTACCGGCCTGGAACTCTGTGGTCAATGCTTATGCCAA 430
||| || || | ||| |||||||| ||||| |||||||| ||||||||||||||||| ||
Sbjct 357 CGACGAGTCAGTCTCAAAGGATTTGCCGGCGTGGAACTCGGTGGTCAATGCTTATGCTAA 416
Query 431 AGCTGGGTTGATCGATGATGCGCGGAAACTGTTCGACGAAATGCCTGAAAGAAACGTGAT 490
||| ||||||||| || |||||||||||||||||||||||||||| ||||||||||||||
Sbjct 417 AGCCGGGTTGATCAATCATGCGCGGAAACTGTTCGACGAAATGCCCGAAAGAAACGTGAT 476
Query 491 TTCCTGGAGCTGCTTGATTAACGGCTACGTTATGTGTGGGAAATACAAAGAAGCGCTTGA 550
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 477 TTCCTGGAGCTGCTTGATAAACGGGTACGTTATGTGTGGGAAATACAAAGAAGCGCTTGA 536
Query 551 TTTGTTCCGGGAGATGCAATTACCTAAACCAAACGAAGCATTCGTCAGACCCAACGAGTT 610
||||||| | |||||||||||||||||| |||| ||||| |||||||| |||||| ||||
Sbjct 537 TTTGTTCAGAGAGATGCAATTACCTAAATCAAATGAAGCTTTCGTCAGCCCCAACAAGTT 596
Query 611 TACAATGTCGACTGTACTCTCGGCTTGTGGGCGATTGGGTGCGCTCGAGCAAGGGAAATG 670
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 TACAATGTCGACTGTGCTCTCGGCTTGTGGGCGATTGGGTGCGCTCGAGCAAGGGAAATG 656
Query 671 GGTTCACGCTTACATCGATAAGTAC-CACGTTG-AGATTGACATTGTCTTAGGCACAGCT 728
||||||| ||||||||||||||||| | | || ||||||||||||| ||||||||||||
Sbjct 657 GGTTCACTCTTACATCGATAAGTACGGA-G-TGAAGATTGACATTGTTTTAGGCACAGCT 714
Query 729 CTCATTGATATGTACGCCAAATGTGGGAGCCTCGAGAGGGCGAAAAGGGTTTTCAATGCC 788
|||||||||||||||||||||||||||| || ||||| || ||||||||||||||||||
Sbjct 715 CTCATTGATATGTACGCCAAATGTGGGAAACTAGAGAGAGCAAAAAGGGTTTTCAATGCC 774
Query 789 TTGGGATCCAAGAAAGATGTCAAAGCTTACAGTGCTATGATATGTTGCTTAGCAATGTAC 848
||||||||||||||||| |||||||| |||||||||||||| | ||||||||||||||||
Sbjct 775 TTGGGATCCAAGAAAGACGTCAAAGCGTACAGTGCTATGATCTCTTGCTTAGCAATGTAC 834
Query 849 GGTCTCACAGATGAGTGCTTCCAACTGTTCTCTGAGATGACCACGAGTGACAACATAAAC 908
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 835 GGTCTCACAGATGAGTGCTTCCAACTGTTCTCTGAGATGACCACGAGTAACAACATAAAC 894
Query 909 CCAAACTCTGTGACATTTGTGGGCATTCTCGGTGCTTGTGTACATCGAGGTCTAATAAAC 968
|||||||| |||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 895 CCAAACTCAGTGACATTCGTGGGCATTCTTGGTGCTTGTGTACATCGAGGTCTAATAAAT 954
Query 969 GAAGGAAAATCTTACTTTAAAATGATGATTGAGGAATTTGGTATCACGCCATCAATCCAG 1028
|||||||||||||||||||||||||||| ||||||||| |||||||| ||||||||||||
Sbjct 955 GAAGGAAAATCTTACTTTAAAATGATGACTGAGGAATTCGGTATCACTCCATCAATCCAG 1014
Query 1029 CATTATGGTTGTATGGTTGATCTCTACGGAAGATCTGGTTTGATCAAAGAAGCAGAGAGC 1088
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1015 CATTATGGTTGCATGGTTGATCTCTATGGAAGATCTGGTTTGATCAAAGAAGCAGAGAGC 1074
Query 1089 TTTATAGCATCTATGCCTATGGAGCCTGATGTACTTATTTGGGGGTCTCTCTTAAGCGGA 1148
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 1075 TTTATAGCATCTATGCCTATGGAACCTGATGTACTTATTTGGGGGTCTCTCTTAAGTGGA 1134
Query 1149 TCAAGAATGCTTGGGGATATCAAGACTTGTGAAGGTGCCCTCAAGCGACTCATCGAGCTA 1208
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1135 TCAAGAATGCTTGGGGATATCAAGACTTGTGAAGGTGCCCTCAAGCGACTCATAGAGCTA 1194
Query 1209 GATCCTATGAACAGTGGAGCATATGTGCTTCTCTCTAACGTCTATGCCAAAACAGGGAGG 1268
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1195 GATCCTATGAACAGTGGAGCCTATGTGCTTCTCTCTAACGTCTATGCCAAAACAGGGAGG 1254
Query 1269 TGGATGGAAGTCAAGTGTATCAGACACGAAATGGAGGT-AAAGGGCATTAATAAAGTTCC 1327
||||| ||||| ||| |||||||||||||||||||||| ||| |||||||| ||||||||
Sbjct 1255 TGGATAGAAGTTAAGCGTATCAGACACGAAATGGAGGTCAAA-GGCATTAAGAAAGTTCC 1313
Query 1328 GGGATGTAGCTATGTTGAAGTAGAGGGAGTGGTTCACGAGTTTGTTGTAGGAGACGAATC 1387
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1314 GGGATGTAGCTATGTTGAAGTAGAGGGAGTGGTTCACGAGTTTGTTGCAGGAGACGAATC 1373
Query 1388 TCAACAAGAGAGCGAAAGGATCTATGCTATGCTCGATGAGATAATGCAGAGGCTGAGAGA 1447
||||||||||||||||| ||| || |||||||||||||||||||||||||||||||||||
Sbjct 1374 TCAACAAGAGAGCGAAAAGATTTACGCTATGCTCGATGAGATAATGCAGAGGCTGAGAGA 1433
Query 1448 AGCTGGATATGTTACAGACACTAAGGAGGTTTTACTTGATCTTAACGAGAAAGATAAAGA 1507
||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1434 AGCTGGATATGTTTCAGACACTAAGGAGGTTTTACTTGATCTTGACGAGAAAGATAAAGA 1493
Query 1508 GATAGCTTTGTCTTACCACAGTGAGAAACTGGCTATTGCGTTCTGTTTGATGAAGACAAG 1567
||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1494 GATGGCTTTGTCTTACCACAGTGAGAAACTGGCGATTGCGTTCTGTTTGATGAAGACAAG 1553
Query 1568 GCCTGGAACTCCAGTGAGAATCATCAAGAACCTCAGAATCTGTGGAGATTGTCATCTTGT 1627
||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1554 GCCTGTAACTCCAGTGAGAATCATCAAGAACCTCAGAATATGTGGAGATTGTCATCTTGT 1613
Query 1628 AATGAAGATGATCTCGAAGCTTTTTAGTAGAGAAATTGTTGTGAGAGATTGTAATAGATT 1687
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1614 GATGAAGATGATCTCGAAGCTTTTTAGTAGAGAAATTGTTGTGAGAGATTGTAATAGATT 1673
Query 1688 TCACCATTTTAGAGACGGGTCTTGCTCTTGCAGAGATTTTTGGTGA 1733
|||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1674 TCACCATTTTAGTGACGGGTCTTGCTCTTGCAGAGATTTTTGGTGA 1719
> Ahg311964 jgi|Araly1|311964|fgenesh1_pm.C_scaffold_1000744
Length=3045
Score = 65.8 bits (35), Expect = 1e-09
Identities = 39/41 (95%), Gaps = 0/41 (0%)
Strand=Plus/Plus
Query 447 GATGCGCGGAAACTGTTCGACGAAATGCCTGAAAGAAACGT 487
||||||| |||| ||||||||||||||||||||||||||||
Sbjct 2029 GATGCGCAGAAAGTGTTCGACGAAATGCCTGAAAGAAACGT 2069
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68448170265
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5