BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G62920.1

Length=420
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg486797 jgi|Araly1|486797|fgenesh2_kg.5__2789__AT3G62920.1         555    1e-157


> Ahg486797 jgi|Araly1|486797|fgenesh2_kg.5__2789__AT3G62920.1
Length=380

 Score =  555 bits (300),  Expect = 1e-157
 Identities = 366/395 (93%), Gaps = 16/395 (4%)
 Strand=Plus/Plus

Query  27   ACTCAATTTCTTCTCTTCCTCCGGCGACGATGTCGATTTACAGGATCGCTAGAGCTTTAC  86
            |||||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct  1    ACTCAATTTCATCTCTTCCTCCGGCGACGATGTCGATTTACAGGATCGCAAGAGCCTTAC  60

Query  87   CCTTCTCCGGGATCTTAAGGCAGCTTGAGAAAGAAGCTGAAACTGTGATCAATGTTCTGC  146
            ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  61   CCTTCTCCGGGATCTTAAGGCAGCTTGAGCAAGAAGCTGAAACTGTGATCAATGTTCTGC  120

Query  147  AACCTGGACCTTTGGGAATCATAGAGCACAAGTTCTCGGCTCAAGAGATTCGGGAAGCAA  206
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct  121  AACCTGGACCTTTGGGAATCATAGAGCACAAGTTCTCGGCTCAAGAGATTCGGGAGGCAA  180

Query  207  AAGCTACAGTTTCTAGAGCTGTTGATAGTTGGCGAAGACATTCTGAGGTCGAGCATGCAA  266
            ||||||||||||||||||| ||||||| ||||||||||||||||||||| ||||||||||
Sbjct  181  AAGCTACAGTTTCTAGAGCAGTTGATAATTGGCGAAGACATTCTGAGGTTGAGCATGCAA  240

Query  267  ATGGCCTTTTAAAAGATTACATTTACAAGTGAAGAAGTTAGTGAAAATCTCTACTTTTGT  326
            ||||||||||||||||||||||||||||||||||| || ||| |||||||||||||||||
Sbjct  241  ATGGCCTTTTAAAAGATTACATTTACAAGTGAAGATGTGAGTAAAAATCTCTACTTTTGT  300

Query  327  TTGTTTCTTCTTTTCTCATGGCTGATGATAAATAAAAGGCCTTTCATTTTGTTGAACAAT  386
            || |  |          |||||||||||| |||||| |||||||||||||||||||||||
Sbjct  301  TT-T--C----------ATGGCTGATGATGAATAAA-GGCCTTTCATTTTGTTGAACAAT  346

Query  387  CTTTAG-GTATCAATGGAAAAGCAAATCTTTCTCT  420
            |||||| | ||||||| ||||||||||||||||||
Sbjct  347  CTTTAGAG-ATCAATGAAAAAGCAAATCTTTCTCT  380



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15109613244


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5