BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G62930.1

Length=486
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg939384 jgi|Araly1|939384|scaffold_503575.1                        536    5e-152


> Ahg939384 jgi|Araly1|939384|scaffold_503575.1
Length=349

 Score =  536 bits (290),  Expect = 5e-152
 Identities = 325/342 (95%), Gaps = 2/342 (1%)
 Strand=Plus/Plus

Query  67   TTTATATACAT-AGAAATGGAAAGCGTTAGAAGTTTAGTTGAAGACAAACCAGTGGTGAT  125
            ||||||||||| | |||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct  6    TTTATATACATCA-AAATGGAAAGCGTTGGAAGTTTAGTTGCAGACAAACCAGTGGTGAT  64

Query  126  ATTCAGCAAAAGCTCTTGCTGCATGAGCCACTCAATTCAAACACTGATCTCAGGGTTTGG  185
            ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  65   ATTCAGCAAAAGCTCTTGCTGCATGAGTCACTCAATTCAAACACTGATCTCAGGGTTTGG  124

Query  186  GGCAAAGATGACGGTCTACGAGCTAGACCAATTCTCAAACGGTCAGGAGATCGAGAAGGC  245
            ||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  125  GGCGAAGATGACAGTCTACGAGCTAGACCAATTCTCAAACGGTCAGGAGATCGAGAAGGC  184

Query  246  ATTGGTACAGATGGGGTGTAAACCCAGTGTACCAGCTGTGTTCATAGGGCAACAATTCAT  305
            ||||||||||||||||||||| || ||||||||||||||||||||||||||||| || ||
Sbjct  185  ATTGGTACAGATGGGGTGTAAGCCAAGTGTACCAGCTGTGTTCATAGGGCAACAGTTAAT  244

Query  306  CGGTGGTGCTAACCAAGTAATGACTCTTCAGGTCAAGAACCAGCTAGCCGCAATGCTAAG  365
            ||||||||||||||| ||||||||||| ||||| |||||||| ||||||||  |||||||
Sbjct  245  CGGTGGTGCTAACCAGGTAATGACTCTCCAGGTGAAGAACCAACTAGCCGCGTTGCTAAG  304

Query  366  AAGAGCCGGAGCCATATGGGTGTAACAGAAGACAAGAGAGTC  407
            ||||||||||||||||||||||||||||||||||||||||||
Sbjct  305  AAGAGCCGGAGCCATATGGGTGTAACAGAAGACAAGAGAGTC  346



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17627882118


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5