BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G62940.2
Length=1235
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486799 jgi|Araly1|486799|fgenesh2_kg.5__2791__AT3G62940.1 1674 0.0
> Ahg486799 jgi|Araly1|486799|fgenesh2_kg.5__2791__AT3G62940.1
Length=1216
Score = 1674 bits (906), Expect = 0.0
Identities = 1133/1238 (92%), Gaps = 33/1238 (3%)
Strand=Plus/Plus
Query 9 TTTTGTCGAGTGAAGCGTAAACCC----TAAATCACTAATCATCGATTCTTCTCCGTTGG 64
|||||||| |||||||||||||| ||||||||||||| | ||||||||||| ||||
Sbjct 1 TTTTGTCGCCTGAAGCGTAAACCCTAAATAAATCACTAATCTTGGATTCTTCTCCTTTGG 60
Query 65 ATCAAAGCTTCATTTAATGGCAGACAAT--AA-AACATCTGAAGGTATTGTATCCGAAGA 121
||||||| | | | || | || ||| || |||||| || || ||||||| ||||
Sbjct 61 ATCAAAG-GT-A-TGAA---C-GATAATCGAATGGCATCTGGAGATAGTGTATCCCAAGA 113
Query 122 AACTCCCATGGATGCTTCTCAGGAGCAACAACATGAAACAGTTGAGGAGATGCTTGCTCG 181
||| ||||| ||||||||||||||| ||||||||||||||||| ||||||||||| ||
Sbjct 114 AACCCCCATTGATGCTTCTCAGGAG---CAACATGAAACAGTTGATGAGATGCTTGCCCG 170
Query 182 CCACAGGCAAGAGATTAAACAACTTCAAAACAAAGAGACAGAGATGAAGAAGGCAGCTGC 241
||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| ||
Sbjct 171 CCACAGGCAAGAGATTAAACAACTTCAGAACCAAGAGACAGAGATGAAGAAGGCAGCCGC 230
Query 242 CAAAGGTAGCAAAGCTGAACAAAAAGCTAAGAAGAAGCAAGTCGAAGATGACATTTCCAA 301
|||||||||||||||||||||||||| |||||||||||||||||||| ||| |||||||
Sbjct 231 AAAAGGTAGCAAAGCTGAACAAAAAGCAAAGAAGAAGCAAGTCGAAGAAGACGTTTCCAA 290
Query 302 ACTCTCCACTAAGCTCAAGGACAAACAGTTGAAAGAACTCGCCTCTCAAGGTTTcagcag 361
||| ||| | || |||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 291 ACTTTCCTCAAAACTCAAGGAGAAACAGTTGAAAGAACTCGCCTCTCAAGGTTTTAGCAG 350
Query 362 cagcagcagcaACAACATTGCCAAGGACGAAACGACTGAGAAAAAAGGAGACATCGACAC 421
|||||||||| || | |||||||||||||| ||| ||||||||||||||||||||||||
Sbjct 351 CAGCAGCAGC-AC--CGTTGCCAAGGACGAAGCGAATGAGAAAAAAGGAGACATCGACAC 407
Query 422 -TCTAGTTAGAGCTATAGCTGGAGTCTCAGTCACTGCTCAGCAAGAGCACTCAAAGCCTA 480
| |||| ||||| |||||||||||||||||||||||||| || |||||||||||||| |
Sbjct 408 GT-TAGTCAGAGCGATAGCTGGAGTCTCAGTCACTGCTCAACAGGAGCACTCAAAGCCCA 466
Query 481 GCAAGAGCGTGAAGAGGCGCGAGAAACGGGCTAAGGAAGAAGCAGACAGAGAGCAGAGAA 540
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 467 GCAAGAGCGTGAAGAGGCGCGAGAAACGGGCTAAGGAAGAAGCAGATAGAGAGCAGAGAA 526
Query 541 TTAAAGAGGAGCAAAGCCACGTGAAAAGTGATCGTATGGTTGAGAACGCCAAGCTTGAGA 600
| ||||||||||||||||| |||| |||||||||| |||| |||||||| ||||| ||||
Sbjct 527 TCAAAGAGGAGCAAAGCCAAGTGACAAGTGATCGTGTGGTCGAGAACGCAAAGCTCGAGA 586
Query 601 AGAAGCTTAAACCATTGGGATTAACAGTCAGTGAGATTAAACCAGACGGACATTGCCTTT 660
|||||||||||||||||||||||||| ||| |||||| ||||||||||||||||||||||
Sbjct 587 AGAAGCTTAAACCATTGGGATTAACAATCAATGAGATAAAACCAGACGGACATTGCCTTT 646
Query 661 ACCGTGCTGTTGAGAATCAGCTTGCCAACCGCTCGGGCGGTGCATCTCCTTACACATACC 720
|||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 647 ACCGGGCTGTTGAGAATCAGCTTGCCAATCGCTCAGGCGGTGCATCTCCTTACACATACC 706
Query 721 AGAATCTAAGAGAAATGGCTGCTTCGTACATGAGAGAGCACAAAACCGACTTTCTCCCGT 780
|||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 707 AGAACCTAAGAGAAATGGCTGCTTCGTACATGAGAGAGCACAAGACCGATTTTCTCCCGT 766
Query 781 TTTTCTTGTCAGAGACTGAGGGTGACTCCAACAGTGGATCTGCAGAAGAGCGGTTTGAGA 840
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 767 TTTTCTTGTCAGAGACTGAGGGCGACTCCAACAGTGGATCTGCAGAAGAGCGGTTTGAGA 826
Query 841 AATACTGCAGAGAAGTCGAGTCAACCGCTGCTTGGGGCAGTCAATTGGAGCTTGGAGCAT 900
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 827 AATACTGCAGAGAAGTCGAGTCAACCGCCGCTTGGGGCAGTCAATTGGAGCTTGGAGCAT 886
Query 901 TAACACATTGCTTGAGGAAACACATAAAGGTGTATTC-GGGATCGTTTCCGGATGTTGAG 959
||||||||||||||||||||||||||||||||||||| ||| |||||||| ||||||||
Sbjct 887 TAACACATTGCTTGAGGAAACACATAAAGGTGTATTCTGGG-TCGTTTCCAGATGTTGAA 945
Query 960 ATGGGCAAAGAGTATAGATCCGGCGATGACTCGAGCCTCATGTTATCGTATCACAGGCAT 1019
||||||| |||||||| |||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 946 ATGGGCAGAGAGTATAAATCCGGCGATGACTCGAGTCTCTTGTTATCGTATCACAGGCAT 1005
Query 1020 GCTTTTGGGCTCGGGGAGCATTATAACTCAGTGGTGCTCGTCAACAACATCACCGGATGA 1079
||||||||||||||||||||||||||||| |||||||||| | |||||||||||||||||
Sbjct 1006 GCTTTTGGGCTCGGGGAGCATTATAACTCCGTGGTGCTCGCCCACAACATCACCGGATGA 1065
Query 1080 TGGATGATGGACTTTATCTAAAGCTTTAAGAAAAGTGCTTTTGTATCAAAAGTTTACTGA 1139
|| | | |||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct 1066 TG-A--A----CTTTATCTCAAGCTTTAAGAAAAGTACTTTTGTATCAAAAGTTTACTGA 1118
Query 1140 AATTCTTTCTTCTTTAATGTTTGTTGGATTTGAGAGA-A-CCAATGTGTAACTTCAATTT 1197
|| |||||||||||||||||||||||||||||||||| | ||||| ||||||||||||||
Sbjct 1119 AAATCTTTCTTCTTTAATGTTTGTTGGATTTGAGAGAGAACCAATCTGTAACTTCAATTT 1178
Query 1198 TTCATTTGGTTACAAGGCGAAGCATAATCTATTGCTAC 1235
||||||||||||||||||||||||||||||||| ||||
Sbjct 1179 TTCATTTGGTTACAAGGCGAAGCATAATCTATTTCTAC 1216
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46128729570
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5