BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G62950.1

Length=686
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg939386 jgi|Araly1|939386|scaffold_503577.1                        593    4e-169


> Ahg939386 jgi|Araly1|939386|scaffold_503577.1
Length=355

 Score =  593 bits (321),  Expect = 4e-169
 Identities = 343/354 (97%), Gaps = 0/354 (0%)
 Strand=Plus/Plus

Query  35   AACTTTCTTGACCATCGCAAATGGAGAGAATAAGAGATTTGTCGTCGAAGAAAGCGGCGG  94
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  2    AACTTTCTTGATCATCGCAAATGGAGAGAATAAGAGATTTGTCGTCGAAGAAAGCGGCGG  61

Query  95   TGATATTCACAAAGAGCTCATGTTGTATGTGCCATAGCATCAAGACGCTATTCTACGAAC  154
            ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct  62   TGATATTCACAAAGAGCTCATGTTGCATGTGCCATAGCATCAAGACGCTATTCTACGAAC  121

Query  155  TAGGCGCTAGTCCGGCGATCCATGAGCTCGACAAAGACCCTGAAGGCCGTGAAATGGAAC  214
            |||||||||||||||| ||||| ||||||||||||||||| |||||||| |||||||| |
Sbjct  122  TAGGCGCTAGTCCGGCAATCCACGAGCTCGACAAAGACCCCGAAGGCCGCGAAATGGAGC  181

Query  215  GGGCCCTACGTGCCCTCGGCTCATCGAACCCGGCGGTTCCAGCTGTTTTCGTTGGAGGAA  274
            | |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct  182  GAGCCCTACGTGCCCTTGGCTCATCGAACCCGGCGGTTCCAGCTGTTTTCGTTGGAGGAA  241

Query  275  GGTACATCGGATCAGCCAAAGACATCATCTCATTCCACGTGGACGGGTCACTCAAGCAGA  334
            |||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct  242  GGTACATCGGATCAGCCAAAGACATCATCTCATTCCACGTCGACGGGTCGCTCAAGCAGA  301

Query  335  TGCTTAAAGACGCTAAGGCCATTTGGTTATAGCGTCCGATCATCGTACATGTAT  388
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  302  TGCTTAAAGACGCTAAGGCCATTTGGTTATAGCGTCCGATCATCGTACATGTAT  355



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25199248137


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5