BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G62960.1
Length=615
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486802 jgi|Araly1|486802|fgenesh2_kg.5__2794__AT3G62960.1 850 0.0
> Ahg486802 jgi|Araly1|486802|fgenesh2_kg.5__2794__AT3G62960.1
Length=593
Score = 850 bits (460), Expect = 0.0
Identities = 566/613 (92%), Gaps = 24/613 (4%)
Strand=Plus/Plus
Query 4 AAAGCTACATATACTAAAAGATATATAATTTCTCGATTGTCCTGAGCCCTCAGACCAAAA 63
|||||||||||| || |||||| |||||||||||||||||||||||||||||| |||||
Sbjct 1 AAAGCTACATATTCTTTAAGATACATAATTTCTCGATTGTCCTGAGCCCTCAGATCAAAA 60
Query 64 TCTGACCATGGACAAGGTTATGAGAATGTCATCGGAGAAAGGAGTCGTGATCTTCACCAA 123
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 61 TCTGACCATGGACAAGGTGATGAGAATGTCATCGGAGAAAGGAGTCGTGATCTTCACGAA 120
Query 124 AAGTTCATGTTGTCTCTGCTACGCCGTGCAAATCCTTTTCCGTGATCTTAGGGTTCAACC 183
||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 121 AAGCTCATGCTGTCTCTGCTACGCCGTGCAAATCCTTTTCCGTGACCTTAGGGTTCAACC 180
Query 184 AACAATCCACGAGATCGACAACGATCCTGACTGCCGTGAGATCGAGAAGGCCTTAGTTCG 243
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 181 AACAATCCACGAGATCGACAACGATCCTGACTGCCGAGAGATTGAGAAGGCCTTAGTTCG 240
Query 244 TCTTGGCTGCGCCAACGCGGTTCCTGCTGTCTTTGTAAGTGGCAAGCTCGTGGGTTCGAC 303
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 241 TCTTGGCTGCGCCAACGCGGTTCCTGCGGTCTTTGTAAGTGGCAAGCTCGTGGGTTCGAC 300
Query 304 CAACGATGTCATGTCGCTTCACCTAAGTGGCTCCCTCGTTCCCTTGATCAAGCCGTATCA 363
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 301 CAACGATGTCATGTCGCTTCACCTAAGTGGCTCTCTCGTTCCCTTGATCAAGCCGTATCA 360
Query 364 GTCATTTCATAACTAGAAAAACAATATCGATGCTTAAGAAAGATAATTAGTATATACTAT 423
||||||||||||||||||||||||| |||||| ||||||||||||||||||||| | |
Sbjct 361 GTCATTTCATAACTAGAAAAACAAT--CGATGCATAAGAAAGATAATTAGTATATG-T-T 416
Query 424 TAATTGGACAGTGAGAATAATGATGGAATTAGATAACACGTAAATGTGTATCAGGTTCTT 483
||||||| ||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 417 -AATTGGATAGTGAGAATAATGATGGAA--AGATATCACGTAAATGTGTATCAGGTTCTT 473
Query 484 ATTTATAGCTAGTGCTTATATCTTGTTTAGCTTATGTCTAAGAAATTGATGAGCTAGCTT 543
||||||| | | | ||||||||||||||||||||||| || |||||||||
Sbjct 474 ATTTATATC--G-----A------GTTTAGCTTATGTCTAAGAAATTAATTAGCTAGCTT 520
Query 544 TGTATTTCCAGCTTAACTAATCGGTGGATGTACTGAT----GTGTACTATCTATTTAATG 599
||||||||||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct 521 TGTATTTCCAGCTTAACTAATCGGTGGATGTACTGATCTATGTGTGTTATCTATTTAATG 580
Query 600 GAAAAATTATTGA 612
|||||||||||||
Sbjct 581 GAAAAATTATTGA 593
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22492521030
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5