BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G62970.1
Length=1092
Score E
Sequences producing significant alignments: (Bits) Value
Ahg939388 jgi|Araly1|939388|scaffold_503579.1 1345 0.0
> Ahg939388 jgi|Araly1|939388|scaffold_503579.1
Length=905
Score = 1345 bits (728), Expect = 0.0
Identities = 831/879 (95%), Gaps = 13/879 (1%)
Strand=Plus/Plus
Query 13 AGTGCTAGTCTCCAGTCAGACTCGATGGAagcagcagcagcagcagATTCTTCGATTCCC 72
||||||| || ||||||||||||||| | | | ||||||||||||||||||||||
Sbjct 38 AGTGCTAATCACCAGTCAGACTCGAT----G--G-A--AGCAGCAGATTCTTCGATTCCC 88
Query 73 AGAGACAAAGACTTTGGCAAATTCCAATTCGGATGCGAGCACTACAAGAGACGATGTAAA 132
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 89 AGAGTCAAAGACTTTGGCAAATTCCAATTCGGATGCGAGCACTACAAGAGACGATGTAAA 148
Query 133 ATCAGAGCTCCTTGCTGCAATCTCATCTTCTCATGCCGCCATTGCCACAACGACTCTGCG 192
|||||||||||||||||||||||||||||| |||||||||| |||||||||||| |||||
Sbjct 149 ATCAGAGCTCCTTGCTGCAATCTCATCTTCCCATGCCGCCACTGCCACAACGACGCTGCG 208
Query 193 AATTCTCT-TCCTGATCCTAAAGAACGTCATGATTTGGTCCGCCAAAACGTCAAACAGGT 251
|||||| | || ||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 209 AATTCTTTATC-TGACCCTAAAGAACGACATGATTTGGTCCGCCAAAACGTCAAACAGGT 267
Query 252 TGTTTGTTCAATTTGTCAAACTGAGCAAGAGGTTGCTAAAGTCTGCTCGAATTGTGGCGT 311
|||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 268 TGTTTGTTCAATATGTCAAACTGAGCAAGAGGTTGCCCAAGTCTGCTCGAATTGTGGCGT 327
Query 312 CAATATGGGAGAATACTTTTGCGATATCTGCAAATTCTTTGACGACGATATTTCGAAAGA 371
||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 328 CAATATGGGGGAATACTTTTGCGATATCTGCAAATTCTTTGACGACGATACCTCGAAAGC 387
Query 372 ACAGTTTCATTGTGATGACTGTGGAATTTGTAGAGTTGGTGGGCGTGACAAATTCTTTCA 431
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 388 ACAGTTTCATTGTGATGACTGTGGAATTTGTAGAGTTGGTGGGCGTGACAAATTCTTTCA 447
Query 432 TTGCCAGAACTGTGGAGCTTGCTACGGAATGGGCTTGCGCGATAAACACTCGTGCATTGA 491
|||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 448 TTGCCAGAACTGTGGAGCTTGCTATGCAATGGGCTTGCGCGATAAACACTCGTGCATTGA 507
Query 492 GAACTCTACAAAAAATTCTTGTCCTGTCTGTTATGAGTATCTATTTGATTCGGTAAAGGC 551
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 508 GAACTCCACAAAAAATTCTTGTCCTGTTTGTTATGAGTATCTATTTGATTCGGTAAAAGC 567
Query 552 CGCACATGTGATGAAATGTGGTCATACAATGCATATGGATTGCTTTGAACAAATGATCAA 611
||||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||
Sbjct 568 CGCACATGTGATGAAATGTGGTCATACTATGCATATTGATTGCTTCGAACAAATGATCAA 627
Query 612 TGAAAACCAGTACCGATGCCCAATTTGTGCCAAGTCAATGGTGGATATGTCTCCTTCGTG 671
||||||||||||||||||||| |||||| ||||||||||| |||||||||||| ||||||
Sbjct 628 TGAAAACCAGTACCGATGCCCCATTTGTTCCAAGTCAATGTTGGATATGTCTCATTCGTG 687
Query 672 GCACCTATTAGAT-TTCGAGATAAGCGCAACAGAGATGCCTGTTGAGTACAAGTTTGAGG 730
||| |||||||| || ||||||||||||||||||||||| |||||||| || |||||||
Sbjct 688 GCAATTATTAGATCTT-GAGATAAGCGCAACAGAGATGCCGGTTGAGTATAACTTTGAGG 746
Query 731 TTTCAATTCTCTGCAATGACTGCAACAAGGGGAGTAAAGCTATGTTCCACATTTTGGGAC 790
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 747 TTTCAATTCTCTGCAATGACTGCAACAAGGGGAGTAAAGCTATGTTCCACATTTTGGGAC 806
Query 791 ACAAGTGCAGTGATTGCGGTTCATACAACACTCGGAGAATCTCAACGCCACAAGATCCAG 850
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 807 ACAAGTGCAGTGATTGTGGTTCATACAACACTCGGAGAATCTCAACGCCACAAGATCCAG 866
Query 851 TGAGTGAAACAGAGTGATCATTTTCTGAAGCCAACTCTT 889
||||||||||||||||||||||||||||||| |||||||
Sbjct 867 TGAGTGAAACAGAGTGATCATTTTCTGAAGCGAACTCTT 905
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40677152439
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5