BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G62990.1

Length=596
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg324722 jgi|Araly1|324722|fgenesh1_pm.C_scaffold_5002266           444    4e-124


> Ahg324722 jgi|Araly1|324722|fgenesh1_pm.C_scaffold_5002266
Length=375

 Score =  444 bits (240),  Expect = 4e-124
 Identities = 355/405 (88%), Gaps = 30/405 (7%)
 Strand=Plus/Plus

Query  31   ATGAACATGACAAAGAACAACGTCGTTGAAGTGTCAACATTTTTGTTCTTCGAAGCATCT  90
            |||||||||||||||||||||||||||||||||||| ||||||||||| | |||||||||
Sbjct  1    ATGAACATGACAAAGAACAACGTCGTTGAAGTGTCACCATTTTTGTTCATGGAAGCATCT  60

Query  91   GCAGATTCCGAGACGACCCATCAGGAACGTGGACACGATGGCGATGATGTGAAAGGTTGT  150
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct  61   GCAGATTCCGAGACGACCCATCAGGAACGTGGACACGATGGAGATGATGTGAAAGGTCGT  120

Query  151  GACGATTGCGGTGAAGATGCTGAGTCATGCAGGTGCGAGATGTCAACGAGTCAGAGGATG  210
            || || || ||||||||||||||||||||||||||||||| |||||||||||| |||| |
Sbjct  121  GAAGAATGTGGTGAAGATGCTGAGTCATGCAGGTGCGAGACGTCAACGAGTCAAAGGACG  180

Query  211  AGTAGGTCAACGGATTTTGACACGGTTGAAGAAGTAGCTGACGTCGCCGGAGAAAATGAA  270
            ||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||
Sbjct  181  AGTAGGTCAACGGATTTTGACCCGGTTGAAGAAGAAGCTGACGTCGCCGGAGAAAATGAA  240

Query  271  GGTCACGTTGACGAAGATGGAGAGGTGAATAGTTATCGGAAGTGGCCAGAGAGGAGAGAC  330
            | | ||| ||| ||||| |||||||||||||||||| ||  |     |||||       |
Sbjct  241  GATGACGATGAGGAAGACGGAGAGGTGAATAGTTAT-GG--G-----AGAGA-------C  285

Query  331  GGCGAAAATCTGACAGTTGATTCATCTTCGACGGGAAATGACGAGAGGTTGATGAGTGAG  390
            |||||||| |||||||||||||||||||||| ||    |         | ||||||||||
Sbjct  286  GGCGAAAAGCTGACAGTTGATTCATCTTCGA-GG----T---------T-GATGAGTGAG  330

Query  391  ATTGaaaaaaaTCGAATGTTTTGGGAAGCTTGTTTGGCTTCTTAA  435
            |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct  331  ATTGAAAAAAGTCGAATGTTTTGGGAAGCTTGTTTGGCTTCTTAA  375



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21824996908


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5