BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G63000.1
Length=1652
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486804 jgi|Araly1|486804|fgenesh2_kg.5__2796__AT3G63000.1 2132 0.0
Ahg483989 jgi|Araly1|483989|fgenesh2_kg.4__3049__AT2G47970.1 926 0.0
> Ahg486804 jgi|Araly1|486804|fgenesh2_kg.5__2796__AT3G63000.1
Length=1414
Score = 2132 bits (1154), Expect = 0.0
Identities = 1272/1330 (96%), Gaps = 3/1330 (0%)
Strand=Plus/Plus
Query 212 TTTTGAACGAACGAGGATGACGATGCTCAGAGTCCGAAGCAGAGATGGATTGGAGAGAGT 271
||||||||||| || |||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct 52 TTTTGAACGAA-GAAGATGACGATGCTGAGAATCCGAAGCAGAGATGGATTGGAGAGAGT 110
Query 272 GAGTGTAGATGGACCTCATATCACAGTCTCCCAACTCAAAACCCTAATCCAAGATCAGCT 331
||| ||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct 111 GAGCGTAGATGGACCTCATATTACAGTCTCCCAACTCAAAACCCTAATCCAAGGTCAGCT 170
Query 332 TCAGATCCCTATCCACAACCAAACCTTATCCACCAATAGAAACCTTCTCCTCGCTAAGAG 391
||||||||||||||| ||||||||||||||||||||| |||||||||||||||| || |
Sbjct 171 TCAGATCCCTATCCATAACCAAACCTTATCCACCAATCGAAACCTTCTCCTCGCCAAAAC 230
Query 392 CCCTTCTGATTTCCTAGCGTTCACCGACATGGCCGATCCTAACCTCCGAATCTCGTCTCT 451
|||| |||||||||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 231 CCCTGCTGATTTCCTAGGGTTCACCGACATGGCCGATCCAAACCTCCGAATCTCGTCTCT 290
Query 452 CAATCTAGCTCACGGCTCTATGGTCTACCTTGCTTACGAAGGTGAGCGTACGATTCGTGG 511
|||||| || |||||||||||| ||||||||||||||||||||||||| |||||||| ||
Sbjct 291 CAATCTCGCCCACGGCTCTATGCTCTACCTTGCTTACGAAGGTGAGCGCACGATTCGCGG 350
Query 512 TGGTCCTGCTGTAACGCCTGCTGGTTCCTTCGGGAGGAAGATGACCGTCGAAGATCTAAT 571
||| ||||| || || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 351 TGGCCCTGCCGTTACACCTGCTGGTTCCTTCGGGAGGAAGATGACCGTCGAAGATCTAAT 410
Query 572 CGCTCGACAGATGCGCGTCGGTCGCCAGGAGAAGGCTCACTGCGATTCCGTCTCGTTCGA 631
||| || ||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 411 CGCACGGCAGATGCGCGTCGGTCGCCAGGAGAAGTCTCACTGCGATTCCGTCTCGTTCGA 470
Query 632 TCGCGATTGCGCCAATGCGTTTCAGCATTTCGTCAACGAGTCGCTTGCCTTCGCTGTCAA 691
||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 471 TCGCGATTGCGCCAACGCGTTTCAGCATTACGTCAACGAGTCGCTTGCCTTCGCTGTCAA 530
Query 692 ACGCGGTGGATTCATGTACGGGAACGTCTCTGAGGATGGTCAGGTTGAGGTGAATTTCAT 751
||||||||||||||||||||| |||||||||||| | |||||||||||||||||||||||
Sbjct 531 ACGCGGTGGATTCATGTACGGTAACGTCTCTGAGCAAGGTCAGGTTGAGGTGAATTTCAT 590
Query 752 CTACGAGCCACCGCAGCAAGGGATGGAGGATAATCTGATTCTGATGAGAGACTCTGAGGA 811
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 591 CTACGAGCCACCGCAGCAAGGGATGGAGGATAATCTGATTCTGATGAGAGACTCTGAGGA 650
Query 812 AGAGAAACGTGTTGATGCTATTGCTTTAGGGTTAGGGATGAGGAGAGTTGGGTTTATATT 871
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 651 AGAGAAACGTGTTGATGCTATTGCTTTAGGGTTAGGGATGAGGAGAGTTGGGTTTATATT 710
Query 872 CAACCAGACTGTGACTCAGGACAAGAAGGAGTACACTTTGTCTAACGTTGAGGTGTTGCT 931
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 711 CAACCAGACTGTGACTCAGGACAAGAAGGAGTACACTTTGTCTAACGTTGAGGTGTTGCT 770
Query 932 TGCGGCTCAGCTTCACGCTGAGAGCGAATTGAAGGAGTGGGTCACTGCTGTTGTGAAGCT 991
|||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 771 TGCGGCGCAGCTTCACGCCGAGAGCGAATTGAAGGAGTGGGTCACTGCGGTTGTGAAGCT 830
Query 992 TGAGATCAATGAGGATGGTGGTGCTGATGTTCACTTTGAGCCGTTTCAGATGAGTGATAT 1051
||||||||| |||||||||| ||||||||||||||| ||| |||||||||||||||||||
Sbjct 831 TGAGATCAACGAGGATGGTGCTGCTGATGTTCACTTCGAGGCGTTTCAGATGAGTGATAT 890
Query 1052 GTGCGTTAGGTTGTTTAAGGAAGGATGGTTCGAGACTGAGATTGGA-CCTGAGGATGATC 1110
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 891 GTGCGTTAGGTTGTTTAAGGAAGGATGGTTCGAGACTGAGATTGGATCC-GAGGATGATC 949
Query 1111 CCAAGCTCTCCAAGTTGAAGAAAGAGGTTGTTGTTGGAGTCAAGGATGTTAAAGAAGTCG 1170
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 950 CCAAGCTCTCCAAGTTGAAGAAAGAGGTTGTTGTTGGAGTCAAGGACGTTAAAGAAGTCG 1009
Query 1171 ATAATGATTTCTTCCTTGTTCTCGTCAAGATCTTGGATCATCAGGGACCGTTGTCGTGTA 1230
| ||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |
Sbjct 1010 ACAATGATTTCTTCCTTGTTCTCGTCAAGATCTTGGATCATCAGGTACCTTTGTCGTGCA 1069
Query 1231 CCTTCCCGATAGAGAACAGGAACACTCAAACAACAATGCGGGCTTTGAAAACGCATATGG 1290
||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct 1070 CCTTCCCGATAGAGAACCGGAACATTCAAACAACAATGCGGGCTTTGAAAACGCATATGG 1129
Query 1291 AGCGAGCAAGGAGCCTCCCATTCGTGAAGAGGATCTCTGATTTTCATCTGCTTCTCTTTG 1350
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1130 AGCGAGCAAGGAGCCTCCCATTTGTGAAGAGGATCTCTGATTTTCATCTGCTTCTCTTTG 1189
Query 1351 TGGCTCAGTTTCTAGACGTATCATCCGACGTCCCTGCGTTGGCTGAATGCGTCCGTCTAC 1410
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 1190 TGGCTCAGTTTCTAGACGTATCATCCGACGTCCCTGCGTTGGCTGAGTGCGTCCGTCTTC 1249
Query 1411 AGTCTCATGTCCCTGAGGGATATGAGTTGCTCATCGACTCCATGGCCAATACTTCTTAAG 1470
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1250 AGTCTCATGTCCCTGAGGGTTATGAGTTGCTCATCGACTCCATGGCCAATACTTCTTAAA 1309
Query 1471 TTTTACAAGTCTGTGTGTTCATATTCTCTCCTTTAGATTTGTGTACAGCTGTTACTTCTT 1530
||||||||||||||||||||||||||||||||| |||||||||||| || |||||||||
Sbjct 1310 TTTTACAAGTCTGTGTGTTCATATTCTCTCCTTCAGATTTGTGTACTTCTTTTACTTCTT 1369
Query 1531 CCTTTAAATT 1540
|| |||||||
Sbjct 1370 CCCTTAAATT 1379
> Ahg483989 jgi|Araly1|483989|fgenesh2_kg.4__3049__AT2G47970.1
Length=1376
Score = 926 bits (501), Expect = 0.0
Identities = 1008/1255 (80%), Gaps = 26/1255 (2%)
Strand=Plus/Plus
Query 233 GATGCTCAGAGTCCGAAGCAGAGATGGATTGGAGAGAGTGAGTGTAGATGGACCTCATAT 292
|||||||||| ||||||||||||||||| ||||| |||| | | || ||| |||||||
Sbjct 35 GATGCTCAGAATCCGAAGCAGAGATGGACTGGAGCGAGTCACAGCCGAGGGAGCTCATAT 94
Query 293 CACAGTCTCCCAACTCAAAACCCTAATCCAAGATCAGCTTCAGATCCCTATCCACAACCA 352
|| || ||||| ||||||||| ||||| | |||||||||||||||||| |||| || ||
Sbjct 95 AACTGTTTCCCAGCTCAAAACCTTAATCGAGGATCAGCTTCAGATCCCTCTCCATAAGCA 154
Query 353 AACCTTATCCACCAATAGAAACCTTCTCCTCGCTAAGAGC-CCTTCTGATTTCCTAGCGT 411
|||||||| |||||| | | || |||||||| || | | || ||||| | || || |
Sbjct 155 GACCTTATCTACCAATCGTGATCTCCTCCTCGCCAA-AACTCCCGCTGATCTACTCGCCT 213
Query 412 TCACCGACATGGCCGATCCTAACCTCCGAATCTCGTCTCTCAATCTAGCTCACGGCTCTA 471
||||||| | |||| || ||||||| |||| ||||||||||| | || |||||||
Sbjct 214 CCACCGACCTCACCGACCCAAACCTCCCCCTCTCCTCTCTCAATCTCGGGCATGGCTCTA 273
Query 472 TGGTCTACCTTGCTTACGAAGGTGAGCG-TACGATTCGTGGTGGTCCTGCTGTAACGCCT 530
|| ||| ||| || ||||| || ||||| | | |||| ||| | |||| | | || |||
Sbjct 274 TGCTCTTCCTCGCCTACGATGGGGAGCGCT-CCATTCCTGGAGCTCCTCCCGCCACTCCT 332
Query 531 GCTGGTTCCTTCGGGAGGAAGATGACCGTCGAAGATC-TAATCGCTCGACAGATGCGCGT 589
|| || |||||||| ||||||||||||||||| || | | ||||| || |||||||||||
Sbjct 333 GCCGGATCCTTCGGCAGGAAGATGACCGTCGATGA-CTTGATCGCCCGCCAGATGCGCGT 391
Query 590 CGGTCGCCAGGAGAAGGCTCACTGCGATTCCGTCTCGTTCGATCGCGATTGCGCCAATGC 649
||| ||||||| | |||||||||| |||||||| |||||||||||||||||||| ||
Sbjct 392 TACTCGTCAGGAGACGTCTCACTGCGACTCCGTCTCCTTCGATCGCGATTGCGCCAACGC 451
Query 650 GTTTCAGCATTTCGTCAACGAGTCGCTTGCCTTCGCTGTCAAACGCGGTGGATTCATGTA 709
|| ||||| | ||||||||| || || || || || ||||| ||||| || || |||||
Sbjct 452 CTTCCAGCACTACGTCAACGATTCTCTAGCTTTTGCCGTCAAGCGCGGCGGCTTTATGTA 511
Query 710 CGGGAACGTCTCTGA-GGATGGTCAGGTTG-AGGTGAATTTCATCTACGAGCCACCGCAG 767
||| | |||| | || ||| || ||||| | || || |||||||||||||||| ||||||
Sbjct 512 CGGCACCGTCACGGAGGGA-GGACAGGTGGAAGTTG-ATTTCATCTACGAGCCGCCGCAG 569
Query 768 CAAGGGATGGAGGATAATCTGATTCTGATGAGAGACT-CTGAGGAAGAGAAACGTGTTGA 826
||||| | ||||| |||||| |||||||||||||| | | || |||||||| || || ||
Sbjct 570 CAAGGCACGGAGGCTAATCTTATTCTGATGAGAGA-TGCCGATGAAGAGAAGCGCGTGGA 628
Query 827 TGCTATTGCTTTAGGG-TTAGGGATGAGGAGAGTTGGGTTT-ATATTCAACCAGACTGTG 884
|| || || | ||| | |||||||||| || | ||||| || || |||||||| |||
Sbjct 629 CGCAATCGCCAT-GGGCCTGGGGATGAGGA-AGGTCGGTTTCATTTTTAACCAGACCGTG 686
Query 885 ACT-CAGGACAAGAAGGAGTACACTTTGTCTAACGTTGAGGTGTTGCTTGCGGCTCAGCT 943
| |||||||||| || |||||| |||| |||| |||||| | | ||||| ||||
Sbjct 687 -TTGCAGGACAAGACTGAATACACTCTGTCCAACGCCGAGGTGCTACAGGCGGCGGAGCT 745
Query 944 TCACGCTGAGAGCGAATTGAAGGAGTGGGTCACTGCTGTTGTGAAGCTTGAGATCAATGA 1003
||| || ||| |||| || ||||||||||||| || || |||||||||||| | |||||
Sbjct 746 TCATGCCGAGGGCGAGCTGCAGGAGTGGGTCACGGCGGTGGTGAAGCTTGAGGTGAATGA 805
Query 1004 GGATGGTGGTGCTGATGTTCACTTT-GAGCCGTTTCAGATGAGTGATATGTGCGTTAGG- 1061
||||||||| || ||||| || ||| ||| ||||||||||||||||||||||| | |||
Sbjct 806 GGATGGTGGCGCCGATGTCCA-TTTCGAGGCGTTTCAGATGAGTGATATGTGCATCAGGC 864
Query 1062 TTGTTTAAGGAAGGA-TGGTTCGAGACTGAGATT-GGACCTGAGGATGATCCCAAGCTCT 1119
|| || |||||| || ||||||||||| |||||| | || || |||||||| |||||||
Sbjct 865 TT-TTCAAGGAA-GAGTGGTTCGAGACGGAGATTATG-CCCGACGATGATCCAAAGCTCT 921
Query 1120 CCAAGTTGAAGAAAGAGGTTGTTGTTGGAGTCAAGGATGTTAAAGAAGTCGATAATGATT 1179
| ||| ||||||| ||||| |||||||| ||||||||| |||| || || ||||| ||||
Sbjct 922 CTAAGATGAAGAAGGAGGTGGTTGTTGGTGTCAAGGATCTTAAGGAGGTGGATAACGATT 981
Query 1180 TCTTCCTTGTTCTCGTCAAGATCTTGGATCATCAGGGACCGTTGTCGTGTACCTTCCCGA 1239
||||||| ||||| |||| |||||||||||| |||||||| |||| | || ||||| |
Sbjct 982 TCTTCCTCGTTCTGGTCAGGATCTTGGATCACCAGGGACCCCTGTCATCAACATTCCCAA 1041
Query 1240 TAGAGAACAGGAACACTCAAACAACAATGCGGGCTTTGAAAACGCATATGGAGCGAGCAA 1299
|||||||| ||| || || | |||| ||||||| | ||||||| ||| |||| || ||||
Sbjct 1042 TAGAGAACCGGAGCAGTCGAGCAACGATGCGGGATCTGAAAACACATCTGGACCGGGCAA 1101
Query 1300 GGAGCCTCCCATTCGTGAAGAGGATCTCTGATTTTCATCTGCTTCTCTTTGTGGCTCAGT 1359
|||| | || || ||||||| ||| || |||||||||||||||||||||||||||||||
Sbjct 1102 AGAGCTTGCCGTTGGTGAAGAAGATGTCAGATTTTCATCTGCTTCTCTTTGTGGCTCAGT 1161
Query 1360 TTCTAGACGTATCATCCGACGTCCCTGCGTTGGCTGAATGCGTCCGTCTACAGTCTCATG 1419
|||| ||||| ||||| ||||||||||| | ||||| || || ||||| ||||| | ||
Sbjct 1162 TTCTGGACGTGTCATCGGACGTCCCTGCCATAGCTGAGTGTGTGCGTCTGCAGTCGCCTG 1221
Query 1420 TCCCTGAGGGATATGAGTTGCTCATCGACTCCATGGCCAATACTTCTTAAGTTTT 1474
| || ||||| |||| |||||||||||| || ||||||||||||| |||| ||||
Sbjct 1222 TTCCAGAGGGCTATGCGTTGCTCATCGAATCAATGGCCAATACTTGTTAACTTTT 1276
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61934738370
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5