BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G63020.1
Length=615
Score E
Sequences producing significant alignments: (Bits) Value
Ahg324725 jgi|Araly1|324725|fgenesh1_pm.C_scaffold_5002269 778 0.0
> Ahg324725 jgi|Araly1|324725|fgenesh1_pm.C_scaffold_5002269
Length=633
Score = 778 bits (421), Expect = 0.0
Identities = 572/638 (90%), Gaps = 37/638 (6%)
Strand=Plus/Plus
Query 1 ATGACGTCATCCTCTACGATTCTCACCGGAGATATA-GATGAAGAACACCGCACGTC-GT 58
|||||||||||||||||||||||||||||||| | | |||||||||||||||||| | ||
Sbjct 10 ATGACGTCATCCTCTACGATTCTCACCGGAGA-AGACGATGAAGAACACCGCACG-CTGT 67
Query 59 CAAT-GGCAGAGGAAGACACGCCTACGCATTCCCATCGACGGCGCTGGAGCACTCCTGTT 117
| | ||| ||||| ||||||||||||||||| ||||||||||| ||||||||||| | |
Sbjct 68 C-TTCGGCTGAGGACGACACGCCTACGCATTCTCATCGACGGCGGTGGAGCACTCC-GGT 125
Query 118 G-ATTCCGGCGGCGAACCTCTTCAAAGCTTATCCGTGAGCAGATCTCTAGAGATAAAATC 176
| ||||||| || ||| ||||||| ||||| |||||||||||||||| | |||
Sbjct 126 GAATTCCGGAGGGGAATCTCTTCAGAGCTTCTCCGTGAGCAGATCTC------T---ATC 176
Query 177 AGACCACGAGAATCCCGACGACGAGT---GCAGGGAACATAGAGGTGTGTGTGGAGTTAT 233
||| |||||||||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct 177 AGATCACGAGAATCCCGACGACGAGTGCAGCAGGGAACATAGAGGTGTGTCTGGAGTTAA 236
Query 234 TCTTGACGAATATTTCTCGTGTTCTTCGAAAAATAACAGTTACAGTTTCTATCTAGGAGG 293
||||||||||||||||||||| || ||| ||||||||||||| |||||||||||||||||
Sbjct 237 TCTTGACGAATATTTCTCGTGCTCATCGGAAAATAACAGTTATAGTTTCTATCTAGGAGG 296
Query 294 GAAGATATCGCCGTGGGGACCGTATGGACCGCCGCTGCTGACGGA---GTCGAGATCAAA 350
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 297 GAAGATATCGCCGTGGGGACCGTATGGACCGCCGCTGCTAACGGAGTCGTCGAGATCAAA 356
Query 351 GGCGCCGTCGCCGC------------GGAGAGGAAGAAGCGTGACGAGGAAGCGAGATCT 398
||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 357 CGCGCCGTCGCCGCGTGGAGAAGAGAGGAGAGGAAGAAGCGTGACGAAGAAGCGAGATCT 416
Query 399 GCCACCATTTTTGACGACACTGGATTGTAACGGACGGCCGAGATTTCATCACAGGAGAGT 458
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 GCCACCATTTTTGACGACACTGGATTGTAACGGACGGCCGAGATTTCATCACAGGAGAGT 476
Query 459 GAGAAGCGAAGGACGGTTAGAGATTGCCAGCGTGGCAGTAGATTCACCGGAGATCGTTAG 518
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 GAGAAGCGAAGGAAGGCTAGAGATTGCCAGCGTGGCAGTAGATTCACCGGAGATCGTTAG 536
Query 519 TGTTCGTGGGA-GAGAAGGACTAAGAATCGGAACAGTGAGAATCAGTCAACAAAACGACG 577
|||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 TGTTCG-GGGAAGAGAAGGACTAAGAATCGGAACAGTGAGAATCAGTCAACAAAACGACG 595
Query 578 TAGTAGAAGATGATAATGAAGATAAACAGAATCACTGA 615
|| |||||||||| |||| || |||||||||||||||
Sbjct 596 AAGGAGAAGATGATGATGATGAGAAACAGAATCACTGA 633
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22492521030
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5