BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G63020.1 Length=615 Score E Sequences producing significant alignments: (Bits) Value Ahg324725 jgi|Araly1|324725|fgenesh1_pm.C_scaffold_5002269 778 0.0 > Ahg324725 jgi|Araly1|324725|fgenesh1_pm.C_scaffold_5002269 Length=633 Score = 778 bits (421), Expect = 0.0 Identities = 572/638 (90%), Gaps = 37/638 (6%) Strand=Plus/Plus Query 1 ATGACGTCATCCTCTACGATTCTCACCGGAGATATA-GATGAAGAACACCGCACGTC-GT 58 |||||||||||||||||||||||||||||||| | | |||||||||||||||||| | || Sbjct 10 ATGACGTCATCCTCTACGATTCTCACCGGAGA-AGACGATGAAGAACACCGCACG-CTGT 67 Query 59 CAAT-GGCAGAGGAAGACACGCCTACGCATTCCCATCGACGGCGCTGGAGCACTCCTGTT 117 | | ||| ||||| ||||||||||||||||| ||||||||||| ||||||||||| | | Sbjct 68 C-TTCGGCTGAGGACGACACGCCTACGCATTCTCATCGACGGCGGTGGAGCACTCC-GGT 125 Query 118 G-ATTCCGGCGGCGAACCTCTTCAAAGCTTATCCGTGAGCAGATCTCTAGAGATAAAATC 176 | ||||||| || ||| ||||||| ||||| |||||||||||||||| | ||| Sbjct 126 GAATTCCGGAGGGGAATCTCTTCAGAGCTTCTCCGTGAGCAGATCTC------T---ATC 176 Query 177 AGACCACGAGAATCCCGACGACGAGT---GCAGGGAACATAGAGGTGTGTGTGGAGTTAT 233 ||| |||||||||||||||||||||| ||||||||||||||||||||| |||||||| Sbjct 177 AGATCACGAGAATCCCGACGACGAGTGCAGCAGGGAACATAGAGGTGTGTCTGGAGTTAA 236 Query 234 TCTTGACGAATATTTCTCGTGTTCTTCGAAAAATAACAGTTACAGTTTCTATCTAGGAGG 293 ||||||||||||||||||||| || ||| ||||||||||||| ||||||||||||||||| Sbjct 237 TCTTGACGAATATTTCTCGTGCTCATCGGAAAATAACAGTTATAGTTTCTATCTAGGAGG 296 Query 294 GAAGATATCGCCGTGGGGACCGTATGGACCGCCGCTGCTGACGGA---GTCGAGATCAAA 350 ||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| Sbjct 297 GAAGATATCGCCGTGGGGACCGTATGGACCGCCGCTGCTAACGGAGTCGTCGAGATCAAA 356 Query 351 GGCGCCGTCGCCGC------------GGAGAGGAAGAAGCGTGACGAGGAAGCGAGATCT 398 ||||||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 357 CGCGCCGTCGCCGCGTGGAGAAGAGAGGAGAGGAAGAAGCGTGACGAAGAAGCGAGATCT 416 Query 399 GCCACCATTTTTGACGACACTGGATTGTAACGGACGGCCGAGATTTCATCACAGGAGAGT 458 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 417 GCCACCATTTTTGACGACACTGGATTGTAACGGACGGCCGAGATTTCATCACAGGAGAGT 476 Query 459 GAGAAGCGAAGGACGGTTAGAGATTGCCAGCGTGGCAGTAGATTCACCGGAGATCGTTAG 518 ||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| Sbjct 477 GAGAAGCGAAGGAAGGCTAGAGATTGCCAGCGTGGCAGTAGATTCACCGGAGATCGTTAG 536 Query 519 TGTTCGTGGGA-GAGAAGGACTAAGAATCGGAACAGTGAGAATCAGTCAACAAAACGACG 577 |||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 537 TGTTCG-GGGAAGAGAAGGACTAAGAATCGGAACAGTGAGAATCAGTCAACAAAACGACG 595 Query 578 TAGTAGAAGATGATAATGAAGATAAACAGAATCACTGA 615 || |||||||||| |||| || ||||||||||||||| Sbjct 596 AAGGAGAAGATGATGATGATGAGAAACAGAATCACTGA 633 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 22492521030 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5