BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G63030.1
Length=784
Score E
Sequences producing significant alignments: (Bits) Value
Ahg939394 jgi|Araly1|939394|scaffold_503585.1 717 0.0
> Ahg939394 jgi|Araly1|939394|scaffold_503585.1
Length=589
Score = 717 bits (388), Expect = 0.0
Identities = 517/578 (89%), Gaps = 14/578 (2%)
Strand=Plus/Plus
Query 45 AAGTGAGATGAAGGAAGAGGAGGAGATCGGAAAACCAGCGAAACCAAAAGCCAAGAAAGA 104
|||||||||| ||| | || ||||||| ||||||||||||||||||||||||||||||
Sbjct 14 AAGTGAGATGGAGG--CA-GACGAGATCGCAAAACCAGCGAAACCAAAAGCCAAGAAAGA 70
Query 105 TGTTGCTCCTGGGAGGTTGATTGATACCTATGCTGCACAGTGCGATAACTGTCACAAGTG 164
||| || ||||||||||| ||||||||||||||||| ||||| ||||||||||||||
Sbjct 71 CACTGCGCCAGGGAGGTTGATCGATACCTATGCTGCACAATGCGAAAACTGTCACAAGTG 130
Query 165 GAGGGTGATTGATAGCCAGGAGGAATATGAAGATATCAGAAGTAAAATGCTCGAGGATCC 224
|||||||||||||||||| ||||| ||||| |||||||||||||||||||| ||||| ||
Sbjct 131 GAGGGTGATTGATAGCCAAGAGGAGTATGAGGATATCAGAAGTAAAATGCTTGAGGACCC 190
Query 225 TTTTAACTGTCAGAAGAAACAGGGCATGTCTTGTGAAGAGCCTGCTGATATTGACTACGA 284
|||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| ||
Sbjct 191 TTTTAACTGTCAGAAGAAACAGGGCATGTCCTGTGAAGAGCCTGCTGATCTTGACTATGA 250
Query 285 TTCTTCTCGGACTTGGGTCATTGACAAGCCTGGTCTCCCCAAAACGCCTAAAGGTTTCAA 344
||| || ||||||||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct 251 TTCCTCAAGGACTTGGGTCATCGACAAGCCTGGTCTCCCCAAAACGCCTCAAGGTTTCAG 310
Query 345 GAGAAGCTTAGTTCTCAGAAAAGATTACTCTAAGATGGATACCTACTACTTTACTCCTAC 404
||| |||||||| ||||| ||||| ||||||||||||||||||||||| |||||||| ||
Sbjct 311 GAGGAGCTTAGTCCTCAGGAAAGACTACTCTAAGATGGATACCTACTATTTTACTCCAAC 370
Query 405 CGGGAAGAAGCTCAGGAGTCGCAATGAAATCGCTGCCTTCGTTGAAGCCAATCCGGAATT 464
|||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 371 CGGGAAGAAGCTGAGGAGTCGCAATGAAATCGCAGCCTTTGTTGAAGCCAATCCGGAATT 430
Query 465 CAGGAACGCACCACTTGGAGACTTCAATTTCACTGTCCCCAAGGTCATGGAAGATACTGT 524
|| ||||||||| || |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 431 CAAGAACGCACCCCTCGGAGACTTCAATTTTACTGTCCCCAAGGTCATGGAAGATACTGT 490
Query 525 TCCCCCTGATCCGAAGCTTGGCTCTCCTTTTCCAAGCACTACTACCACTACTTCAGAGAA 584
||| |||||||| ||||||| ||||||| || | ||||||||||| |||||||
Sbjct 491 TCCTCCTGATCCTAAGCTTGCCTCTCCTATT--------T-CTACCACTACTACAGAGAA 541
Query 585 GAGCAGTGTCAAGCAGAGCCATAA-CTAATATGTTCTC 621
||||||| ||||||||| ||| | |||||||||||||
Sbjct 542 GAGCAGTTTCAAGCAGATCCA-AGGCTAATATGTTCTC 578
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28935294003
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5