BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G63040.1
Length=654
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486807 jgi|Araly1|486807|fgenesh2_kg.5__2799__AT3G63040.1 737 0.0
> Ahg486807 jgi|Araly1|486807|fgenesh2_kg.5__2799__AT3G63040.1
Length=624
Score = 737 bits (399), Expect = 0.0
Identities = 568/643 (88%), Gaps = 37/643 (6%)
Strand=Plus/Plus
Query 16 CATGACTAGAGGCATGATACCAACAAAAGCAAAGGTAGTAGTCATCTCACTGATTTGGGC 75
||||||||||||||||| ||||||||| |||||| |||||||||||||||||||||||||
Sbjct 1 CATGACTAGAGGCATGACACCAACAAACGCAAAGTTAGTAGTCATCTCACTGATTTGGGC 60
Query 76 TATTCTGGTGTTGGAAAGTGCAACAGTGTCAAGTGCAGTAGAAGATTTGGTGGTGGAACA 135
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TATTCTGGTGTTGGAAAGTGCAACAGTGTCAAGTGCAGTAGAAGATTTGGTGGTGGAACA 120
Query 136 GTGCAAGCACAACTGTAAACATGATATCCACAACAAGAAGAAAGAGTGTGAAGATAAGTG 195
|||||||||| |||| ||||||||||||||||||| | ||||||||||||||||| |||
Sbjct 121 GTGCAAGCACGACTGCAAACATGATATCCACAACA-G--GAAAGAGTGTGAAGATAGGTG 177
Query 196 CAATGAACTGTTGATGATGGAGATAGAGAAAGAGACAAGTGGACGACAAGAAGAAGAACA 255
|||||||| | ||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 178 CAATGAACAGATGATGATGGAGATGGAGAAAGAGACAAGTGGACGACAAGAAGAAGAACA 237
Query 256 CAATCCCTTCTGTGAGGCATTTTGCAACCCCTTTGAAGGACTCTTTCAACATTGCATGGC 315
|||||||||||| || ||||||||||| |||||||||||||||| |||||| ||||||||
Sbjct 238 CAATCCCTTCTGCGATGCATTTTGCAAACCCTTTGAAGGACTCTATCAACAATGCATGGC 297
Query 316 CGTTTGCCCTCGCACCAAGTCCAAACCAGAGATGATGGTCATAGGAGGAGAAGGTGTTGC 375
||||||||||||||||||||||| | ||| || | || || || | | ||
Sbjct 298 CGTTTGCCCTCGCACCAAGTCCATAG--GAG--GA-G---AT-GG-GG------T-T-GC 339
Query 376 TAATGAGG-GTTTGCAGACAAAATGCAACAGAAAATGCCTGTCTTACACCGAACCGGAGG 434
||| | || ||| |||| || | |||||||||||||||| ||||||| | ||| ||||
Sbjct 340 TAACGGGGAGTT-GCAGGCATACTGCAACAGAAAATGCCCATCTTACATTGGACCAGAGG 398
Query 435 CCTATAAAAAATGCATATCCGGATGCTTCATGTCCAACGAGGAAGTCTGTGAGACATCGT 494
|||| ||||||||||| ||||||||||||| |||||||||||||||||| ||||||||||
Sbjct 399 CCTACAAAAAATGCATGTCCGGATGCTTCACGTCCAACGAGGAAGTCTGCGAGACATCGT 458
Query 495 GCAGTATTCTTCAAGAGGAACCGCTCACTATAAGGTGCATGAGGATTTGCCATGAGAGAA 554
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 459 GCAGTATTCTTCAAGAGGAACCGCTCACTATAAGGTGCATGAGGATTTGCCATGAGAGAA 518
Query 555 TTCCCGGAGTTGTAGC--CT-CTACTTAATGTTTTA---CG---A-G--GGGACTTGTAA 602
||||||||| ||| || || ||||||||||||| | | | | |||| || |||
Sbjct 519 TTCCCGGAGCTGTTGCTTCTTCTACTTAATGTTTAAAATCTTTTAAGAAGGGATTTCTAA 578
Query 603 GGAATAAGTGTGT-T-TCTTTGGTGTAAGAATCCAAATTAAAA 643
||||||||||||| | | |||||||||||||||||||||||||
Sbjct 579 GGAATAAGTGTGTGTGTTTTTGGTGTAAGAATCCAAATTAAAA 621
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23979314793
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5