BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G63050.1

Length=499
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg486808 jgi|Araly1|486808|fgenesh2_kg.5__2800__AT3G63050.1         542    1e-153


> Ahg486808 jgi|Araly1|486808|fgenesh2_kg.5__2800__AT3G63050.1
Length=464

 Score =  542 bits (293),  Expect = 1e-153
 Identities = 393/439 (90%), Gaps = 16/439 (4%)
 Strand=Plus/Plus

Query  18   ATGCAGAGAGCAAATGATGATGACAACAAGAGAGGGTTTTTTCGGCGGCTTTTAAAGTTG  77
            |||||||||| ||| |||||||   ||||||||||  ||||||| |||||||||| ||||
Sbjct  1    ATGCAGAGAGGAAAAGATGATG---ACAAGAGAGGCATTTTTCGCCGGCTTTTAAGGTTG  57

Query  78   GTGTTCGTTAAACTCATGGCGGGTGCGGGTCACAAGGAAGATAAGTCTGTGACAAAGAAA  137
            ||| |||||||||||||     |   ||||||||||||||||| ||||||||| ||||||
Sbjct  58   GTGGTCGTTAAACTCAT-----G-AAGGGTCACAAGGAAGATAGGTCTGTGACGAAGAAA  111

Query  138  CTGATCAAGAAAGAATCAAAGTCTGATATCACAATTTATTTCAAGCAAAGAGAAGAGTCC  197
            |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct  112  CTGATCAAGAAAGAATCAAAATCTGATATCACAATTTATTTCAAGCAAAGAGAAGACTCC  171

Query  198  GAGGATAACAACGCTAATCCCATCAATATCTCAAGAAGCTCGGAGAAAGATAGGGTGATC  257
            |||||||||   || |||||||||||| |||||||||||||||||||||| |||||||||
Sbjct  172  GAGGATAAC---GCAAATCCCATCAATTTCTCAAGAAGCTCGGAGAAAGAGAGGGTGATC  228

Query  258  ATGCTGGTTAATGGTAGTAACGGCTCAAAGAAGAACTTAGCGAGTGAGCTAAACGTTAGG  317
            |||||||||||||||||||||||||||||||||||||| ||||||||||| | |||||||
Sbjct  229  ATGCTGGTTAATGGTAGTAACGGCTCAAAGAAGAACTTGGCGAGTGAGCTGAGCGTTAGG  288

Query  318  CGATCAGTAGCTCAAACTGGAGCTGGTGGTGTGACACAGCCGAAGCCTCTTTTGAATGAT  377
            |||||||||||||||||||||||||||  ||  |||||||||||||||||||| ||||||
Sbjct  289  CGATCAGTAGCTCAAACTGGAGCTGGTA-TG--ACACAGCCGAAGCCTCTTTTCAATGAT  345

Query  378  ATAAACACTAAATCACATGCTTTCATTCAGAGTAGACTCGAGAAGATGCGAAAAGGCTTG  437
            ||||| || ||||| |||||||||||| ||||||||||||  ||||||||||||||||| 
Sbjct  346  ATAAATACGAAATCGCATGCTTTCATTGAGAGTAGACTCGCCAAGATGCGAAAAGGCTTA  405

Query  438  TAGCCAAATG-CATGATGA  455
            ||||||||   ||||||||
Sbjct  406  TAGCCAAAAAACATGATGA  424



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18123904775


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5