BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G63052.1

Length=201
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg480869 jgi|Araly1|480869|fgenesh2_kg.3__3570__AT3G63052.1         226    5e-59
  Ahg486809 jgi|Araly1|486809|fgenesh2_kg.5__2801__AT3G63052.1         130    4e-30


> Ahg480869 jgi|Araly1|480869|fgenesh2_kg.3__3570__AT3G63052.1
Length=165

 Score =  226 bits (122),  Expect = 5e-59
 Identities = 138/145 (95%), Gaps = 3/145 (2%)
 Strand=Plus/Plus

Query  27   CCGACCCAGGAAAGTCCCCGGGCCACTTATCCGCAGAGATGCGGCCTCGGTAACGAGAGA  86
            |||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct  1    CCGACCCAGGAAAGTCCCCGGGCCAC-TACCCGCAGAGATGCGGCCTCGGTAACGAGAGA  59

Query  87   ATCTTGCGGTGGAGAGATTC-AAATTGCTGAGACGCGTGTGTGGAGCTTATGTGGTCTCT  145
            ||| |||||||||||||| | ||| |||||||||||||||||||||||| ||||||||||
Sbjct  60   ATCATGCGGTGGAGAGATCCTAAA-TGCTGAGACGCGTGTGTGGAGCTTCTGTGGTCTCT  118

Query  146  CCGCCGATGATATCATGGCCGTTCG  170
            |||||||||||||||||||||||||
Sbjct  119  CCGCCGATGATATCATGGCCGTTCG  143


> Ahg486809 jgi|Araly1|486809|fgenesh2_kg.5__2801__AT3G63052.1
Length=159

 Score =  130 bits (70),  Expect = 4e-30
 Identities = 72/73 (99%), Gaps = 0/73 (0%)
 Strand=Plus/Plus

Query  112  GCTGAGACGCGTGTGTGGAGCTTATGTGGTCTCTCCGCCGATGATATCATGGCCGTTCGA  171
            |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  78   GCTGAGACGCGTTTGTGGAGCTTATGTGGTCTCTCCGCCGATGATATCATGGCCGTTCGA  137

Query  172  CAGTTATTCACCT  184
            |||||||||||||
Sbjct  138  CAGTTATTCACCT  150


 Score =  108 bits (58),  Expect = 2e-23
 Identities = 70/75 (93%), Gaps = 3/75 (4%)
 Strand=Plus/Plus

Query  1   ATGGGTCATATGGGCTTGTCC-AAGTTCCGACCCAGGAAAGTCCCCGGGCCACTTATCCG  59
           |||||||| ||||||||| || |||||||||||||||||||||||||||| ||| |||||
Sbjct  1   ATGGGTCAAATGGGCTTG-CCTAAGTTCCGACCCAGGAAAGTCCCCGGGCTACT-ATCCG  58

Query  60  CAGAGATGCGGCCTC  74
           |||||||||||||||
Sbjct  59  CAGAGATGCGGCCTC  73



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 6797510458


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5