BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G63060.1
Length=1184
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486810 jgi|Araly1|486810|fgenesh2_kg.5__2802__AT3G63060.1 1445 0.0
> Ahg486810 jgi|Araly1|486810|fgenesh2_kg.5__2802__AT3G63060.1
Length=975
Score = 1445 bits (782), Expect = 0.0
Identities = 886/934 (95%), Gaps = 15/934 (2%)
Strand=Plus/Plus
Query 17 AATGCTTCTAGAGGGAAGATTCTCCGTCGTCCAGATGAACACGAATAGACGGCTCAAATT 76
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 1 AATGCTTCTAGAGGGAAAATTCTCCGTCGTCCAGATGAACACGAATAGACGGCTCAGATT 60
Query 77 TAACCAACCGAGTCGATTACCCAACTCGGGTAAGTCAGGTATAGAGAATGAGCGAGTCCT 136
||||||||||||||||||||||| ||| ||| |||||||||||||||| |||||||||||
Sbjct 61 TAACCAACCGAGTCGATTACCCAGCTCAGGTGAGTCAGGTATAGAGAACGAGCGAGTCCT 120
Query 137 GGTTCTTGTCTTCGAGTCCATTAGCTGGGACATCCACACGCTATGCACAATCGCCTCCCT 196
|||||| ||||||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct 121 GGTTCTCGTCTTCGAGTCCATTAGCTGGGACATCCACACGCTATGCGCAATTGCCTCCCT 180
Query 197 CAGCCGCAGATTCTGCGCAATCGCCAGACGAATTCTGTGGCGGCGGCTCTGTGTGAACCG 256
|||||||||||||||||||||||||| |||||||||||||||||||||||| || |||||
Sbjct 181 CAGCCGCAGATTCTGCGCAATCGCCAAACGAATTCTGTGGCGGCGGCTCTGCGTAAACCG 240
Query 257 TGCGCCAGGGATGGTGGCGGCATTGTCCGGCGAAGATCCCAGCGGTCGAATCGACGGCGG 316
|||||| ||||||||||| |||||||||||| |||||||||||| || |||||||||||
Sbjct 241 TGCGCCGGGGATGGTGGCAGCATTGTCCGGCTCAGATCCCAGCGGCCGGATCGACGGCGG 300
Query 317 CTGGCACGCGTTAGCGAAACTCATGTTCTTCTGCGGCGGGGGTGAGTCGACTCGGTATTT 376
|||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 301 ATGGCACGCGTTAGCGAAACTCATGTTCTTCTGCGCCGGAGGTGAGTCGACTCGGTATTT 360
Query 377 CAATCTGAGTCAACCGACGTCGGGTCACTTCGCCTGCGAGTCCAGATTCTCCAAGACATC 436
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 361 CAATCTGAGTCAACCGTCGCCGGGTCACTTCGCCTGCGAGTCCAGATTCTCCAAGACATC 420
Query 437 CGGGAGATTCTTCCTGCCAAAGAATTGCCGCCGTGATCTCCTATACATGAGCGATCCGTG 496
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 421 CGGGAGATTCTTCCTGCCGAAGAATTGCCGCCGTGATCTCCTATACATGAGCGATCCGTG 480
Query 497 CGAGCATCAGGCGGTGGGTGGAGATGAGCATTTAGGGGTTTTCAGAGGGGTATTTCGGGA 556
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 CGAGCATCACGCGGTGGGTGGAGATGAGCATTTAGGGGTTTTCAGAGGGGTATTTCGGGA 540
Query 557 ATTTATGAGGTCAAAGACGAGGGAGTGTCTCGTGAGAAGACAAGCGGCGCTGGAGGAGAA 616
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 ATTTATGAGGTCAAAGACGAGGGAGTGTCTCGTGAGAAGACAAGCGGCGCTGGAGGAGAA 600
Query 617 GGTTAGGTGTCCGTATTGCGGAGGGCGCGTGTGGAGCATGACGGCGGCGCGTCTCGTCCC 676
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 601 GGTTAGGTGTCCGTATTGCGGAGGGCGCGTGTGGAGCATGACGGCGGCGCGTCTTGTCCC 660
Query 677 GAAGAGTGCGGCGCGGCGGCTGGGATCACGTGAAGGTGGGTTAGAGTTCTTCGTGTGCGT 736
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 661 GAAGAGTGCGGCGCGGCGGCTGGGATCACGTGAAGGTGGGTTAGAGTTCTTCGTATGCGT 720
Query 737 GAACGGTCACTTGCACGGCACTTGCTGGCTGATTCCGCTTTCATCGGAGGAAGAAGACAA 796
|||||||||||||||||||| |||||||||||||||||||| ||||| | ||||| |
Sbjct 721 CAACGGTCACTTGCACGGCACCTGCTGGCTGATTCCGCTTTCGTCGGA--A-GAAGA-A- 775
Query 797 TGGAGAAGACGACGACAACAGTGACGGAAGTGTGATCTAATCCAATGGTGGTGGCGATGT 856
| | |||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 776 -G-A-----CGACGACAACAGTGACGGCAGTGTGATCTAATCCAATGGTGGTGGCGATGT 828
Query 857 CCACGTGGAATTAGGTCTCTTGGGCCATATGCAAACCACAAGAGGAAAATCTCAGTTAGA 916
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 829 CCACGTGGAATTAGGTCTCTTGGGGCATATGCAAACCACAAGAGGAAAATCTCAGTTAGA 888
Query 917 TT--T-CTCCTATGAGATGTGGAGCTCACTAGTA 947
|| | ||||||||| ||||||||||||||||||
Sbjct 889 TTCATTCTCCTATGACATGTGGAGCTCACTAGTA 922
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44184460803
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5