BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G63070.1
Length=4429
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486811 jgi|Araly1|486811|fgenesh2_kg.5__2803__AT3G63070.1 6525 0.0
Ahg484006 jgi|Araly1|484006|fgenesh2_kg.4__3066__AT2G48160.1 983 0.0
> Ahg486811 jgi|Araly1|486811|fgenesh2_kg.5__2803__AT3G63070.1
Length=4361
Score = 6525 bits (3533), Expect = 0.0
Identities = 4124/4404 (94%), Gaps = 62/4404 (1%)
Strand=Plus/Plus
Query 1 TCGTGTGTGAATGTTTCTCTTCCACAAAAGCGATAGAATCCACCAGAAATCTTCGATTGT 60
|||||||||||| |||||||||| |||||||||| |||||||||| ||||||| |||||
Sbjct 1 TCGTGTGTGAATATTTCTCTTCCGGAAAAGCGATAAAATCCACCAGCAATCTTCTATTGT 60
Query 61 CTCTCTCCCTCATCTCAATTAGGGTTTACGGGACCGATTTTCTTCTGTCTTGCGTGCCTA 120
||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CTCTCTCGCTCGTCTCAATTAGGGTTTACGGGACCGATTTTCTTCTGTCTTGCGTGCCTA 120
Query 121 CATCCGTCGATTGGGTTGGGAATTTTCAATGCCTGCGAGTTCTTTAGCGGAATCTGTCTC 180
||||||||||||||||| | | ||||||||||||||||||||| |||||||||||||| |
Sbjct 121 CATCCGTCGATTGGGTTCGTATTTTTCAATGCCTGCGAGTTCTATAGCGGAATCTGTCAC 180
Query 181 CGAAAACCCTAGGCACTGCCGAGCTGCTAATTTTCGCCTGTGGTTCTGGCTTAACTTCGA 240
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 181 CGAAAACCCTAGGCACTGCCGAGCTGCTAATTTTCGCCTGCGGTTCTGGCTTAACTTCGA 240
Query 241 GAGTTAGAATCCTTACCTTTTCCTT-TTCTGATTTTCGTTGtttttttttCTTCTGAATT 299
||||||||||||||||||||||||| || ||||||||| || ||||||||| |||||||
Sbjct 241 GAGTTAGAATCCTTACCTTTTCCTTATT-TGATTTTCGCTG-TTTTTTTTC--CTGAATT 296
Query 300 CCGATGGCTCCGAGCCGCAAGAGAGGGGGTGGTAGGGCTGCGGCGGCATCATCCGCTCGC 359
|||||||||||||||||||||| ||| ||||||| |||||||||||||||||||||||||
Sbjct 297 CCGATGGCTCCGAGCCGCAAGAAAGGCGGTGGTAAGGCTGCGGCGGCATCATCCGCTCGC 356
Query 360 CGAGAGT------GGAAGGTTGGCGATCTCGTTCTTGCCAAAGTCAAAGGATTTCCTGCT 413
||||||| ||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 357 CGAGAGTGGAAGGGGAAGGTTGGCGATCTCGTGCTTGCCAAAGTCAAAGGATTTCCTGCT 416
Query 414 TGGCCTGCCGTGGTTGA-CGAACCGGAAAAATGGGGCCACTCAGCCGATTCGAAGAAAGT 472
|||||||||| |||| | ||||||||||||||||||| ||||||||||||||||||||||
Sbjct 417 TGGCCTGCCGCGGTT-AGCGAACCGGAAAAATGGGGCTACTCAGCCGATTCGAAGAAAGT 475
Query 473 AACT-GTTCACTTTTTTGGCACTCAACAGATAGCTTTTTGCAATCATGGTGATGTTGAAT 531
| | |||||||||||||||||||||||||||||| | ||||||| || |||||||||||
Sbjct 476 -ATTAGTTCACTTTTTTGGCACTCAACAGATAGCTCTCTGCAATCCTGCTGATGTTGAAT 534
Query 532 CATTTACTGAGGAGAAGAAGCAATCACTTTTGACAAGACGGCACGCCAAAGGTTCAGATT 591
||||||| ||||||||||||||||| |||||||||| ||| || ||||||||||||||||
Sbjct 535 CATTTACGGAGGAGAAGAAGCAATCGCTTTTGACAAAACGACATGCCAAAGGTTCAGATT 594
Query 592 TTGTCCGTGCTGTCAAGGAGATCACAGAGAGTTACGAGAAGCTGAAGCAGCAGGACCAAG 651
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 595 TTGTCCGTGCCGTCAAGGAGATCACAGAGAGTTACGAGAAGCTGAAGCAGCAGGACCAAG 654
Query 652 CTAGTGGGCCTAAATATGCTGAAGAAACAACTGCTGGAAGTTCTGGGAACACT-TCACAG 710
|||||| ||||||| ||||||||||||||||| ||||||||||| ||||||| | ||||
Sbjct 655 CTAGTGATCCTAAATGTGCTGAAGAAACAACTGTTGGAAGTTCTGCGAACACTGT-ACAG 713
Query 711 CTGCCTCAGGCCTGTGAAAATCTAATTGGTTCAAGACTTGACACTCAAATAGAGTCAAGT 770
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 714 CTGCCTCAGGCCTGTGAAAATCTAATTGGTTCAAGACTTAACACTCAAATAGAGTCAAGT 773
Query 771 TCTAGTCATGGTAGAGATGAGTTGACTCTTCTCAGCGAAGATGCTTCAGCTGCTGAACAA 830
|||||||||||||||||||| | |||||||||||||||||||| ||||||||||||||
Sbjct 774 TCTAGTCATGGTAGAGATGAATCGACTCTTCTCAGCGAAGATG---CAGCTGCTGAACAA 830
Query 831 ATGCTAGCCCTGCGTCATAACACTCTAGCTCATAATGGTGCCTGTGATAGTGCAGCAGCT 890
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 831 ATGCTAGCCCTGCGTCATAACACTCTAGCTCATAATGGAGCCTGTGATAGTGCAGCAGCT 890
Query 891 AAAGATCTATGTGAGATAGCTACATATTCCTCAAGGAGAAGAAATGAAAGGGTGCGGGCT 950
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 891 AAAGATCTATGTGAGATAGCTACATATTCTTCAAGGAGAAGAAATGAAAGGGTGCGGGCT 950
Query 951 CTAAAGTATGCTCCACAGAGTATAATATTACCGGTTGAGCACTCTAAAATCTCATCAAGG 1010
||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 951 CTAAAGTGTGCTCCACAAAGTATAATATTACCGGTTGAGCACTCTAAAATCTCATCAAGG 1010
Query 1011 TTGGAATTGGATAGAGTTCAAAGGTCCATGCTTCAATGCAGTGATGGTGGTCCAAGTGTC 1070
||||||||||||||| |||||||||||||||||||||||||||||||||| || ||||||
Sbjct 1011 TTGGAATTGGATAGACTTCAAAGGTCCATGCTTCAATGCAGTGATGGTGGCCCGAGTGTC 1070
Query 1071 AATAGTATAAATGGCAA-AGCTATAAGAAGGAGAAAAAGAATCCGTACGTCAGGTCAATC 1129
||| ||||| || | || ||| ||||||||||||||||| ||||||| ||||||||||||
Sbjct 1071 AATGGTATAGAT-GAAAGAGCCATAAGAAGGAGAAAAAGGATCCGTAGGTCAGGTCAATC 1129
Query 1130 TGAATCAGATGACGTGGTTTCATCAGATCTAAATCTGCACGGATCTGATGAGGACAACGC 1189
||||||||||||||| |||||||||||||||||| ||||||||||||||||||| |||||
Sbjct 1130 TGAATCAGATGACGTTGTTTCATCAGATCTAAATTTGCACGGATCTGATGAGGAGAACGC 1189
Query 1190 ATCTGAAATTGCTACAGTTGAATCTAACAATAATAGTAGGAATGAAGGCAATGGTGTGGA 1249
|||||||||||| |||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 1190 ATCTGAAATTGCGACAGTTGAATCTGATAATAATAGTAGGAATGAAGGCAATGGTGTGGA 1249
Query 1250 TTCTGGTTCCAAAGTTGAGTATTCTGATGCCGTTGGTGAGGGTTGTGACGGAGGTCATGA 1309
||||||||||||||||||| |||||||| | |||| ||| ||||||||||||||||||||
Sbjct 1250 TTCTGGTTCCAAAGTTGAGCATTCTGATACTGTTGCTGACGGTTGTGACGGAGGTCATGA 1309
Query 1310 GCTTAACAAAGGGCTTGATTTTCATATTAGCACCATGGTTAAGAGGAAGAAGAGGAAACC 1369
||| ||||||||||||||||| || |||||||||||||||||||||||||||||||| ||
Sbjct 1310 GCTCAACAAAGGGCTTGATTTCCAAATTAGCACCATGGTTAAGAGGAAGAAGAGGAAGCC 1369
Query 1370 CACCAGAAAACGTGAAACCAGTGACATTATTGACCCTCCTGCTAAAGTTGAAGCAGAAGG 1429
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1370 CACCAGGAAACGTGAAACCAGTGACATTATTGACCCTCCTGCTAAAGTTGAAGCAGAAGG 1429
Query 1430 TCTTGGGCCCAATGCATGTGATAGCTGCCAGAGATCTCAAAATTCTCATGAAAGGCTGAA 1489
||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| |||
Sbjct 1430 TCTTGGGCCCAATGCTTGTGACAGCTGCCAGAGATCTCAAAATTCTCATGAAAGGCCGAA 1489
Query 1490 TGAGAGGCCCTGTGAAGAGAATGGTGATGAACATTTGCCTCTGGTAAAGCGAGCCAGAGT 1549
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1490 TGAGAGGCCCTGTGAAGAGAATGGTGATGAACATTTGCCTCTTGTAAAGCGAGCCAGAGT 1549
Query 1550 TCGAATGAGTAGAGCTTTTTATGCTGATGAAAAGGTCAATGCCTCTTCACAGGTGGAAGA 1609
||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct 1550 CCGAATGAGTAGAGCTTTTTATGCTGATGAAAAGGTCAATACCTCTTCACAGGTCGAAGA 1609
Query 1610 GAGATCGTCGAAAGACACCCTACTAAGTGCAGCTTTGCAGACAAGCCCTTCTGTGAATCA 1669
|||||| ||||||||||| ||| | |||||||||||||||||||||||||| ||||||||
Sbjct 1610 GAGATCATCGAAAGACACTCTAATGAGTGCAGCTTTGCAGACAAGCCCTTCGGTGAATCA 1669
Query 1670 TGAAAATGGTATTGGTTCTGGTCATGATACTTCTGCAGCCGAAGAATTTAACAGCTTTGA 1729
|||||||| ||||| ||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct 1670 TGAAAATGATATTGTTTCTGTTCATGATACTTCTGCAGCCGAAAAATTTAACAGCTTTGA 1729
Query 1730 GTTGTCTGCTAAGCTTTCAGGTGTTATGGTTGATGTAGTGCCTTCTCATATGGAGAAACC 1789
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct 1730 GTTGTCTGCTAAGCTTTCAGATGTTATGGTTGATGTAGTGCCTTCTCATATGGAGAATTC 1789
Query 1790 TTCAGACAGAATGTCTCCTTCT-GTGGCCTGTGTTCAGACTGTAGGAGATAGACAAACGG 1848
|||||||||||||||||| ||| | ||||||||||||||||||||||||||||||||| |
Sbjct 1790 TTCAGACAGAATGTCTCCGTCTAG-GGCCTGTGTTCAGACTGTAGGAGATAGACAAACTG 1848
Query 1849 CTGTGAATTTCCATGAGAACGAGTTTACCATGACACTAGATGATGAAGTAACTCGAGCAC 1908
||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1849 CTGTGAAATTCCATGAGAACGTGTTTACCATGACACTAGATGATGAAGTAACTCGAGCAC 1908
Query 1909 AATCTAACCAACTTAGCAGTTTGGTAGAAACAGAAGCTCGTGTTCCTGAAGTAGTTCAGG 1968
|||||||||||||||||||||||| ||||| | |||||| ||| ||||||||||||||||
Sbjct 1909 AATCTAACCAACTTAGCAGTTTGGCAGAAAGAAAAGCTCATGTGCCTGAAGTAGTTCAGG 1968
Query 1969 GATGTTCTGAGGAATCGCAAACTGGGAACTGTCTAATTAGTGAGACTGATCCTATTGATA 2028
|||||||||||||||||||||| ||||||||||||| |||||| || ||||||| ||| |
Sbjct 1969 GATGTTCTGAGGAATCGCAAACCGGGAACTGTCTAAATAGTGAAACCGATCCTACTGACA 2028
Query 2029 TACAATGCTCACATCAAAGTGAGAAACATGAAACCCCTTTGAATCCTGATATCGTTGATT 2088
| |||||||||| ||||| ||||||| |||||||||| ||||||||||||||||||||||
Sbjct 2029 TGCAATGCTCACTTCAAAATGAGAAAAATGAAACCCCGTTGAATCCTGATATCGTTGATT 2088
Query 2089 CATCTGCAAATAAGTCCCCCGGTTTATGCTCGAGTTTGGATATGACAACAACAGTGGTAC 2148
|||| || | |||||||| ||||||||||||||||||||||||||||||| || ||| |
Sbjct 2089 CATCGGC--A-AAGTCCCCTGGTTTATGCTCGAGTTTGGATATGACAACAATAGGGGTTC 2145
Query 2149 CTGCTCAATCTCCTCACCAACACAAAATCCAGGAGTATGATTCTAGTGACCATTCATTGG 2208
||||||||||||||||||||||| ||| |||||||||||||||| |||||||||||||||
Sbjct 2146 CTGCTCAATCTCCTCACCAACACCAAAGCCAGGAGTATGATTCTGGTGACCATTCATTGG 2205
Query 2209 TCATTGTTGGAGATTCTCTTAATGGAAAATGTGAGAAAATTGATTACTGTATGACTCAGG 2268
|||||| ||||||||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct 2206 TCATTGGTGGAGATTCTCTTAATGAAAAATGTGAGAAAATTGATTACCGTATGACTCAGG 2265
Query 2269 TTGTTCAGTCCCAAGCCTTAGAACCGCCGCCTCCATTGTTCTGTTCAGTGGTCAATTATC 2328
|||||||||||||||| |||||| || ||||||||||||||||||||||||||||||
Sbjct 2266 TTGTTCAGTCCCAAGCTTTAGAA---CCTCCTCCATTGTTCTGTTCAGTGGTCAATTATG 2322
Query 2329 AGGAGGTTGAAAACCTGCAGGAGACTGAAAATACTCTTTGGAAAGAAAACCAAGGAAGTC 2388
| ||||||||||||| |||||||||||| || ||||| |||||||||||||||||||||
Sbjct 2323 AAGAGGTTGAAAACCCGCAGGAGACTGAGAACACTCTACGGAAAGAAAACCAAGGAAGTC 2382
Query 2389 CCGGTAAAGAACTTGATAGTGACAAACAAGCTCACATGATACAGAATCCAGTACTCTCTG 2448
| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2383 CGGGTAAAGAACTTGATAGTGACAAACAAGCTCACATGATACAGAATCCAGCACTCTCTG 2442
Query 2449 CTACTGAAAGTGAAATGATCGTAGATGATGCGGAACCTCAGTATGAAACTGTATATAGTC 2508
|||||||||||||||||||||| || || || |||||||||||||||||| | ||| |||
Sbjct 2443 CTACTGAAAGTGAAATGATCGTTGAAGAAGCAGAACCTCAGTATGAAACTATGTATGGTC 2502
Query 2509 ACTGTGCAGATGCTGTGGAGAACAGAGAGCTGGAAAAGAGTTGTGAGGTTGATGAGCAGA 2568
||||||| ||||| |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2503 ACTGTGCGGATGCAGTGGAGAACATAGAGCTGGAAAAGAGTTGTGAGGTTGATGAGCAGA 2562
Query 2569 AGGAGCAGATGCAAGCCACCAATTCTATCTCAGTATCTGAGAACTTTTCACGTGAAAAAT 2628
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2563 AGGAGCAGATGCAAGCCACCAATTCTATCTCAGTATCTGAGAACCTTTCACGTGAAAAAT 2622
Query 2629 TGAATTCATCTCCTGCAAGGGGTACTCCAAATTGCAACTCAGTATGCCGAATTTCTACCG 2688
||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||
Sbjct 2623 TGAATTCATCTCCTGCAAGGGGTACTCCACATTGCAACTCTGTATGCCGAATTTCTACCG 2682
Query 2689 CAGAAAGTGAAAATGCTATGCA-GAACAACAGTTATTACAGCACCAATGTTCAGTATGGT 2747
||||||||| |||||||||||| ||| |||||| ||| ||||||||||||||||| ||||
Sbjct 2683 CAGAAAGTGCAAATGCTATGCAGGAA-AACAGTAATTGCAGCACCAATGTTCAGTTTGGT 2741
Query 2748 GAGAACAAATCATTAAATGTTGACACTGTCAAAGAAGAAAGCAAAGTTGAAACAGGCACA 2807
||| | |||||||| ||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct 2742 GAGGAGAAATCATTGAATAATGACACTGTCAAAGAAGAAAGCAAAGTTGAAACAGGCCCA 2801
Query 2808 ACTCAGGTGAAGAAAGTTGTTAGTTCTGATGTGCAATGCACTGTTGAGTCTTTTGAGACT 2867
|||||||||||||||||| |||||||||||||||||| ||||||||| ||||||||||||
Sbjct 2802 ACTCAGGTGAAGAAAGTTATTAGTTCTGATGTGCAATTCACTGTTGAATCTTTTGAGACT 2861
Query 2868 GCACTTGACTCATTGGTGAGGACAAAGGAGACCATTGGCCGAGCAACTCGCTTGGCTATG 2927
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2862 GCACTTGACTCATTGGTGAGGACAAAGGAGACCATTGGCCGAGCAACTCGCTTGGCTATG 2921
Query 2928 GACTTGGCGAAATTTGGCGTTTCAGCAAAGGCGATGGAAATTCTGGCCCACACTTTGGAA 2987
|||||||| |||||||| || || |||||||||||||||||||||||||| |||||||||
Sbjct 2922 GACTTGGCAAAATTTGGTGTGTCGGCAAAGGCGATGGAAATTCTGGCCCATACTTTGGAA 2981
Query 2988 AGTGAGTCAAATTTACAAAGGAGGGTGGATTTATTTTTCCTTGTGGATTCTATTGCTCAG 3047
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2982 AGCGAGTCAAATTTACAAAGGAGGGTGGATTTATTTTTCCTTGTGGATTCTATTGCTCAG 3041
Query 3048 TGCTCCAAAGGTTTGAATGGTGATGCTGGTGGTGTTTATCTTTCATCCATTCAGGCTATG 3107
|||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 3042 TGCTCCAAAGGTCTGAATGGTGATGCTGGTGGTGTTTATCTTTCATCCATTCAAGCTATG 3101
Query 3108 CTACCTCGCCTATTAACTGCTGCTGTCCCAGCTGGAGCTACCACACAAGAAAACCGAAAA 3167
|| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 3102 CTGCCTCGCCTATTAACTGCTGCTGTTCCAGCTGGAGCTACCACACAAGAAAACCGGAAA 3161
Query 3168 CAGTGCTTGAAGGTTTTGAGGCTTTGGCTTGAAAGACGGATCCTTCCTGAATCTATAGTT 3227
|||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 3162 CAGTGCCTGAAGGTTTTGAGGCTTTGGCTCGAAAGACGGATCCTTCCTGAATCTATAGTT 3221
Query 3228 CGTCACCATATAAGAGAACTTGATTC-GCTTAGTAATGTTCCTGCTTGCCTCTATTCTCG 3286
|||||||||||||||||||||||||| | ||||||||||||||||||| |||||||||||
Sbjct 3222 CGTCACCATATAAGAGAACTTGATTCAG-TTAGTAATGTTCCTGCTTGTCTCTATTCTCG 3280
Query 3287 GCGATCCGCTCGAACAGAAAGGGCGCTGGATGACCCTGTTAGAGATATGGAGGGTATACT 3346
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3281 GCGATCTGCTCGAACAGAAAGGGCGCTGGATGACCCTGTTAGAGATATGGAGGGTATACT 3340
Query 3347 GGTGGATGAATATGGAAGTAATTCAACTCTCCAGCTTCATGGATTCTGCATACCTCCAAT 3406
||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 3341 GGTGGATGAATATGGAAGTAATTCAACTCTCCAGCTTCATGGATTCTGCATGCCTGCAAT 3400
Query 3407 ACTTAGGGATGAAGACGAAGGAAGTGACTCGGATGGGGGTGATTTTGAGTCTGTCACCCC 3466
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3401 GCTTAGGGATGAAGACGAAGGAAGTGACTCGGATGGGGGTGATTTTGAGTCTGTCACCCC 3460
Query 3467 TGAACACGAGTCAAGAAGCCTTGAAGAACATGTCACACCGTCCATTACCGAAAGGCATAC 3526
|||||| ||||| |||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 3461 TGAACATGAGTCCAGAAGCCTTGAAGAACATGTCACACCCTCCATTACTGAAAGGCATAC 3520
Query 3527 CCGTATACTGGAAGATGTTGATGGTGAGCTTGAAATGGAAGACGTGGCTCCACCTTGGGA 3586
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3521 CCGTATATTGGAAGATGTTGATGGTGAGCTTGAAATGGAAGACGTGGCTCCACCTTGGGA 3580
Query 3587 AGGTGGAAGCAGTGCTAGTGCGATCACAGATCAAGCTGATAATAGAGAGTCTGCAAATTG 3646
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3581 AGGTGGAAGCAGTACTAGTGCGATCACAGATCAAGCTGATAATAGAGAGTCTGCAAATTG 3640
Query 3647 TCTGCTTGTCCCTGGAACTTCACATCAGAATGTTACCTCGTCATCTCCACCAGCTCGCCC 3706
|| || |||| |||| ||||||||||||||||||||||| |||||||||||||||| |||
Sbjct 3641 TCAGCCTGTCTCTGGCACTTCACATCAGAATGTTACCTCTTCATCTCCACCAGCTCCCCC 3700
Query 3707 TTCGCAGAATGCTCAGTTGGCAATGTCTAATTCCTACTCAAATGGCTTTGACTACCGCAG 3766
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 3701 TTCGCAGAATGCTCAGTTGGCAATGTCTGATTCCTACTCAAATGGCTTTGACTACAGCAG 3760
Query 3767 AAATCCCAGCATGCAGGGCGACTATCATGCCGGTCCTCCAAGGATGAATCCCCCAATGCA 3826
||||||||||||||| || || ||||| ||||||||||||| || || | |
Sbjct 3761 AAATCCCAGCATGCATGGAGATTATCAGGCCGGTCCTCCAA---TGCAT-------T--A 3808
Query 3827 TTACGGAAGTCCTGAACCATCTTATAGTTCCCGAGTATCTTTGTCAAAAAGCATGCCACG 3886
| |||||||| || |||||||||||||||| |||||||||||||||||||||| ||
Sbjct 3809 T---GGAAGTCCCGAGTCATCTTATAGTTCCCGCGTATCTTTGTCAAAAAGCATGCTGCG 3865
Query 3887 TGGGGAGGGTTCTAACTTCCAGCATAGGCCATATCCATCTTCTCATCCCCCACCTCCTCC 3946
|||||||||||||||||||||||||||||| || ||||||||||||| ||||||||
Sbjct 3866 TGGGGAGGGTTCTAACTTCCAGCATAGGCCTTACCCATCTTCTCATCTACCACCTCC--- 3922
Query 3947 GCCATCACATCATTATTCATATATGGAGCCGGACCACCATATAAAGTCGCGGAGAGAAGG 4006
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 3923 GCCATCACATCATTATTCATATATGGAGCAGGACCACCATATAAAGTCGCGGAGAGAAGG 3982
Query 4007 TCTATCATACCCTCACAGATCTCATTACACACTGGAATTTGACGAAAGGAATTATCAAGA 4066
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3983 TCCATCATACCCTCACAGATCTCATTACACACTGGAATTTGACGAAAGGAATTATCAAGA 4042
Query 4067 CAGCTATGAGAGAATGAGGCCTGAACCATGCGAGAATCGAGACAATTGGAGATATCATCC 4126
||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||
Sbjct 4043 CAGCTATGAGAGAATGAGGCCTGCACCATGTGAGAATCGAGACAATTGGAGATATCATCC 4102
Query 4127 GCCCTCTTCTCATGGTCCACGATATCATGACAGACACAAAGGACCTCATCAATCGAGCTC 4186
|||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct 4103 GCCCTCTTCTCATGGTCCACGATATCATGACAGACACAAAGGCCCTTATCAATCGAGCTC 4162
Query 4187 ATACAGTGGGCATCACCGTGACTCAGGAAGGTTGCAGAACAATAGGTGGAGTGATTCTCC 4246
||||||||| |||||||||||||| ||||| || |||||||||||||||||| |||||||
Sbjct 4163 ATACAGTGGCCATCACCGTGACTCTGGAAGATTTCAGAACAATAGGTGGAGTCATTCTCC 4222
Query 4247 GCGTGCATATAACAATAGACACTC-TTATCACTATAAGCAGCATTCGGAAGGTCCTGTTC 4305
|||||||||||||| ||||||||| || ||||||||||| ||||||||||||||||||||
Sbjct 4223 GCGTGCATATAACAGTAGACACTCGTT-TCACTATAAGCCGCATTCGGAAGGTCCTGTTC 4281
Query 4306 CAGTAGGAATGAGAGATCC---AGGGACGTGGCATCAAAGGTGAGTGGGAGACAAGAGAT 4362
||||||||||||||||||| |||||||||||||||||||||||||||||||| | |
Sbjct 4282 CAGTAGGAATGAGAGATCCTCCAGGGACGTGGCATCAAAGGTGAGTGGGAGACATG---T 4338
Query 4363 GAAGAAGG-GCAAAGGTGCAGTCT 4385
||||||| | |||||||||||||
Sbjct 4339 CAAGAAGGCG-AAAGGTGCAGTCT 4361
> Ahg484006 jgi|Araly1|484006|fgenesh2_kg.4__3066__AT2G48160.1
Length=4601
Score = 983 bits (532), Expect = 0.0
Identities = 1310/1673 (78%), Gaps = 104/1673 (6%)
Strand=Plus/Plus
Query 302 GATGGCTCCGAGCCGCAAGAGAGGGGGTGGTAGGGCTGCGGCGGCATCAT-CCG-CTCGC 359
||||||||||||||||| || ||| ||||||| |||||| || | | | | ||| || ||
Sbjct 172 GATGGCTCCGAGCCGCAGGAAAGGCGGTGGTAAGGCTGCCGCCGTAGC-TGCCGCCT-GC 229
Query 360 CGAGAGTGGAAGGTTGGCGATCTCGTTCTTGCCAAAGTCAAAGGATTTCCTGCTTGGCCT 419
| | |||||||||| ||||| || || ||||||||||||||||| |||||||||||||||
Sbjct 230 CTAAAGTGGAAGGTGGGCGACCTTGTGCTTGCCAAAGTCAAAGGTTTTCCTGCTTGGCCT 289
Query 420 GCCGTGGTTGA-CGAACCGGAAAAATGGGGCCA-C-TCAGCCGATTCGAAGAAAGTAACT 476
|||| |||| | || || ||||| ||||| | | ||| |||||| ||||||||| |
Sbjct 290 GCCGCGGTT-AGTGAGCCAGAAAAGTGGGG--AGCTTCAACCGATTTGAAGAAAGTCTTT 346
Query 477 GTTCACTTTTTTGGCACTCAACAGATAGCTTTTTGCAATCATGGTGATGTTGAATCATTT 536
|||||||||||||| || |||||||||||||| ||||||||| ||||||||| |||||
Sbjct 347 GTTCACTTTTTTGGAACACAACAGATAGCTTTCTGCAATCATACCGATGTTGAAGCATTT 406
Query 537 ACTGAGGAGAAGAAGCAATCACTTTTGACAAGACGGCACGCCAAAGGTTCAGATTTTGTC 596
|| || |||| |||||||||||||||||||| ||| || || |||||||||||||||||
Sbjct 407 ACAGACGAGAGGAAGCAATCACTTTTGACAAAACGCCATGCGAAAGGTTCAGATTTTGTT 466
Query 597 CGTGCTGTCAAGGAGATCACAGAGAGTTACGAGAAGCTGAAGCAGCAGGACCAAGCTAGT 656
|||||||| |||||||| | ||||||||| |||||||| |||||||| || |||||| ||
Sbjct 467 CGTGCTGTAAAGGAGATTATAGAGAGTTATGAGAAGCTTAAGCAGCAAGAACAAGCTGGT 526
Query 657 GGGCCTAAATATGCTGAAGAAACAACTGCTGGA-AGTTCTG-GGAACACTTCACAGCTGC 714
| || |||| |||||||||| | ||| || || ||| ||| || | ||| ||| | |||
Sbjct 527 GATCCCAAATCTGCTGAAGAAGCCACT-CTTGAGAGTGCTGAGG-ATACTACACTGATGC 584
Query 715 CTCAGGCCTGTGAAAATCTAATTGGTTCAAGACTTGACACTCAAATAG-AGTCAAGTT-C 772
|||||| | |||||| || || ||| |||| | | | || ||||| | |||| ||| |
Sbjct 585 CTCAGGTCAGTGAAATTCCAACTGGGACAAGTC-T-A-ACACAAAT-GAAGTC-TGTTCC 639
Query 773 TAGTCATGGTAGAGATGAGT-TGACTCTTCTCAGCGAAGATGCTTCAGCTGCTGAACAAA 831
|||||||||||||||||| | | ||| | || | || ||||||||||||||||||||||
Sbjct 640 TAGTCATGGTAGAGATGAATCT-ACTATGCTAAATGAGGATGCTTCAGCTGCTGAACAAA 698
Query 832 TGCTAGCCCTGCGTCATAACACTCTAGCTCATAATGGTGCCTGTGATAGTGCAGCAGCTA 891
|||||||||||||| |||||| | || | | ||| |||||||||||||||| | ||
Sbjct 699 TGCTAGCCCTGCGTGATAACAGTGTACCACGTAACAAAGCCTGTGATAGTGCAGTTGTTA 758
Query 892 AAGATCTATGTGAGATAGCTACATATTCCTCAAGGAGAAGAAATGAAAGGGTGCGGGCTC 951
|||| | | | ||||||| |||||||| ||||||| |||||||| | |||| || |||
Sbjct 759 AAGAACCACGCAAGATAGCAACATATTCTTCAAGGAAAAGAAATGGAGGGGTACGATCTC 818
Query 952 TAAAG-TATGCTCCACAGA-GTATA-ATATTACCGGTTGAGCACTCTAAAA-TCTCATCA 1007
|||| | ||| ||||||| | ||| || || | |||| ||| |||||||| | ||||||
Sbjct 819 -AAAGGTGTGCACCACAGAAGAATACATGTT-C-GGTTCAGCGCTCTAAAAGT-TCATCA 874
Query 1008 AGGTTGGAATTGGATAGAG-TTCAAAGGTCCATGCTT-CAATGCAGTGATGGTGGTCCA- 1064
|||||| || |||| || ||||||| |||||| || ||| ||| |||||||| | |
Sbjct 875 AGGTTGCAAACCGATA-AGCTTCAAAGCTCCATG-TTGCAAAACAGCGATGGTGGAC-AG 931
Query 1065 AGTGTCAAT-A-GTATAA-ATGGCAAAGCTAT-AAGAAGGAGAAAAAGAATCCGTA---C 1117
||| | || | || || |||| | || || ||||||| ||||||| ||| | | |
Sbjct 932 AGTATTGATGACGTGGAAGATGG-A--GC-ATTAAGAAGGGGAAAAAGGATCAGAAGATC 987
Query 1118 GTCAGGTCAATCTGAATCAGATGACGTGGTTTCATCAGATCTAAATCTGC-ACGG-ATCT 1175
|||||||| |||||||||||||| |||| |||||||| | ||||| | | | || | |
Sbjct 988 ATCAGGTCATTCTGAATCAGATGATGTGGCTTCATCAGCTTTAAAT-TCCCATGGGAG-T 1045
Query 1176 GATGAGGACAACGCATCTGAAATTGCTACAGTTGAATCTAACAATAATAGTAGGAATGAA 1235
|| || || || || ||||||||||| || ||||||||| | ||||||| ||||||||||
Sbjct 1046 GACGAAGAAAATGCCTCTGAAATTGCGACGGTTGAATCTGATAATAATACTAGGAATGAA 1105
Query 1236 GGCAATGGTGTGGATTCTGGTTCCAAAGTTGAGTATTCTG-ATGCCGTTGGTG-AGGGTT 1293
||||||||||| |||||||||||||||||||| | || || |||||| | ||
Sbjct 1106 GGCAATGGTGTAGATTCTGGTTCCAAAGTTGAACAAA-TGGATA---TTGGTGGACAATT 1161
Query 1294 G-T-GACGGAGGTCATGAGCTTAACAAAGGGCTTGATTTTCATATTAGCACCATGGTTAA 1351
| || |||| | ||||||| ||||| |||||| |||| || |||| | |||||||||
Sbjct 1162 TCTCGAAGGAGATTATGAGCTCAACAAGGGGCTTAATTTCCAAATTAATATCATGGTTAA 1221
Query 1352 GAGGAAGAAGAGGAAACCC-ACCAGAAAACGTGAAACCAGTGACATTATTGACCCTCCTG 1410
||| |||||||| ||| || ||||||||||||| ||||||||| || |||| |||| |
Sbjct 1222 GAGAAAGAAGAG-AAAGCCGACCAGAAAACGTGGAACCAGTGATGTTGTTGATCCTCAGG 1280
Query 1411 CTAAAGTTGAAGCAGAAG--GT-CTTG-GGCCCAATGCATGTGATAGCTGC-CAGAGATC 1465
|||||||||||||||||| || | || ||| | ||| |||||| || |||| |||
Sbjct 1281 CTAAAGTTGAAGCAGAAGCAGTTCCTGAGGCTGGA-GCACGTGATAA-TGTTCAGACATC 1338
Query 1466 TCAAAATTCTCATGAAAGGCTGAATGAGAGGCCCTGTGAAGAGAATGGTGATGAACATTT 1525
|||||||||||||||||| | | ||||||||| |||||||| ||||| ||||| || ||
Sbjct 1339 ACAAAATTCTCATGAAAGGTTTACTGAGAGGCCTTGTGAAGATAATGGGGATGAGCACTT 1398
Query 1526 GCCTCTGGT-AAAGCGAGCCAGAGTTC-GAATGAGTAGAGCTTTTTATGCTGATGAAAAG 1583
|||||||| ||| ||||||||||| | | ||||||||||| ||||||| | || | ||
Sbjct 1399 ACCTCTGGTGAAA-CGAGCCAGAGT-CAGGATGAGTAGAGCATTTTATGGTAATCATGAG 1456
Query 1584 GTCAAT-GCCTCTTCACAGGTGGAAGAGAGATCGTCGAAAGACACCCTACTAAGTGCAGC 1642
| |||| || ||||||||||| ||||| ||||| || || |||||||| | |||||| |
Sbjct 1457 GCCAATAGC-TCTTCACAGGTTGAAGAAAGATCATCCAAGGACACCCTGGTCAGTGCAAC 1515
Query 1643 TTTGCAGACAAGCCCTTCTGTGAATCATGAAAATGGTATTGGTTCTGGTCATGATACTTC 1702
|||||||||||||||| | | || | | | | || ||||||||||||
Sbjct 1516 AGCACAGACAAGCCCTTCTG--A-T-ATCA---T--T-T-----CTAGTCATGATACTTT 1560
Query 1703 TGCAGCCGAAGAATTTAACAGCTTT-GA-GTTGTCTGCTAAGCTTTCAGGTGTTATGGTT 1760
||||| ||||||| || || ||| || || |||||||||||| ||||||| ||||||
Sbjct 1561 TGCAGTTGAAGAATCTA-CATTTTTTGAAGT-GTCTGCTAAGCTCTCAGGTGACATGGTT 1618
Query 1761 GATGTAGTGCCTTCTCATATGGAGAAACCTTCA-GACAGAATGTCTCCTTCTGTGGCCTG 1819
|||||| || |||| | ||||||||||| || || |||||||||| |||| ||| ||
Sbjct 1619 AATGTAGCACCATCTCCTGTGGAGAAACCT-CATGATGGAATGTCTCCATCTGAGGCTTG 1677
Query 1820 TGTTCAGACTGTAGGAGATAGACAA-ACGGCTGTGAATTTCCATGAGAACGAGTTTACCA 1878
||||||||||| |||| ||| || | | ||||| | | ||| ||| ||| ||
Sbjct 1678 CGTTCAGACTGTGGGAGGGAGAGAATATG-CTGTGGGGT-----G-GAATGAGCTTAGCA 1730
Query 1879 TGACACTAGATGATGAAGTAACTCGAGCACAATCTAACCAACTTAGCAGTTTG 1931
||||| | ||||||||| | || || | |||||||| ||| |||||||||||
Sbjct 1731 AGACACCAAATGATGAAGCAGCTGGACCCCAATCTAATCAAGTTAGCAGTTTG 1783
Score = 933 bits (505), Expect = 0.0
Identities = 882/1055 (84%), Gaps = 61/1055 (6%)
Strand=Plus/Plus
Query 2638 CTCCTGCAAGGGGTACTCCAAATTGCAACTCAG--TA-TGCCGA-ATTTCTACCGCAGAA 2693
||||||| ||||| |||||| || ||| ||||| || | || | |||||||| ||||||
Sbjct 2499 CTCCTGCGAGGGGGACTCCACATAGCAGCTCAGTTTATTACC-ACATTTCTACTGCAGAA 2557
Query 2694 AGTGAAAATGCTATGCAGAACAACAGTTA-TTACAGCACC-AATGTT-CAGTATGGTGAG 2750
|||| ||||| ||||||||||||||| || || |||| || |||||| || | |||||||
Sbjct 2558 AGTGCAAATGATATGCAGAACAACAG-TAGTTGCAGC-CCAAATGTTCCA-TCTGGTGAG 2614
Query 2751 AACAAATCAT-TAAATGTTGACACTGTCAAAGAAGAA-AGCAAAGTTGAAACAGGCACAA 2808
|| ||| || | || || || ||||||||||||| || ||| | |||||||| |
Sbjct 2615 AAGAAA-AATGTTTGTGATGCCATTGTCAAAGAAGAAGAG-AAAATCGAAACAGGTGTAT 2672
Query 2809 CTCAGGTGA-AGAAAGTTGTTAGTTCTGATGTGCAATGCACT-GTTGAGTCTTTTGA-GA 2865
||||| || ||||||||||||||| ||||||||||| |||| || || |||| ||| ||
Sbjct 2673 GTCAGG-GACAGAAAGTTGTTAGTTGTGATGTGCAATCCACTCGTGGA-TCTTATGAGGA 2730
Query 2866 CTGCACTTGA-CTCATTGGTGAGGACAAAGGAGACCATTGGCCGAGCAACTCGCTTGGCT 2924
||||||| | |||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 2731 -TGCACTT-AGTTCATTGGTGAGGACAAAGGAGAGTATTGGCCGAGCAACTCGTTTGGCT 2788
Query 2925 ATGGACTTGGCGAAATTTGGCGTTTCAGCAAAGGCGATGGAAATTCTGGCCCACACTTTG 2984
||||||||| ||||||||| || || |||||||| ||||| ||| |||| || ||||||
Sbjct 2789 ATGGACTTGATGAAATTTGGTGTGTCTGCAAAGGCTATGGAGATTTTGGCTCATACTTTG 2848
Query 2985 GAAAGTGAGTCAAATTTACAA-AGGAGGGTGGATTTATTTTTCCTTGTGGATTCTATTGC 3043
|||||||||||||||||| || ||||||||||| |||||||||||||||||||| |||||
Sbjct 2849 GAAAGTGAGTCAAATTTA-AAGAGGAGGGTGGACTTATTTTTCCTTGTGGATTCCATTGC 2907
Query 3044 TCAGTGCTCCAAAGGTTTGAATGGTGATGCTGGTGGTGTTTATCTTTCATCCATTCAGGC 3103
||||||||||||||| |||| |||||| ||||| |||||||||||||| ||||||| |
Sbjct 2908 TCAGTGCTCCAAAGGGCTGAAAGGTGATACTGGTTGTGTTTATCTTTCAGCCATTCAAG- 2966
Query 3104 T-ATGCTACCTCGCCTATTAACTGCTGCTGTCCCAGCTGGAGCTACCACACAAGAAAACC 3162
| || ||||||||||||| | |||||||| || ||||||||||||||||||||||| |
Sbjct 2967 TAATTTTACCTCGCCTATTGGCGGCTGCTGTACCTGCTGGAGCTACCACACAAGAAAATC 3026
Query 3163 GAAAACAGTGCTTGAAGGTTTTGAGGCTTTGGCTTGAAAGACGGATCCTTCCTGAATCTA 3222
| ||||||||||| |||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct 3027 GGAAACAGTGCTTAAAGGTTTTGAAGCTTTGGCTTGAAAGACGGATCCTGCCTGAATCTA 3086
Query 3223 TAGTTCGTCACCATATAAGAGAACTTGATTCGCTTAGTAAT-GTTCCTGCTTGCCTCTAT 3281
| ||||||||||||||||||||||||||||| | |||| || ||||||| ||||||||||
Sbjct 3087 TTGTTCGTCACCATATAAGAGAACTTGATTCACATAGT-ATAGTTCCTGTTTGCCTCTAT 3145
Query 3282 TCTCGGCGATCCGCTCGAACAGAAAGGGCGCTGGATGACCCTGTTAGAGATATGGAGGGT 3341
|||||||| || ||||||||||||||| || ||||||| ||||| ||||||||||||| |
Sbjct 3146 TCTCGGCGCTCAGCTCGAACAGAAAGGTCGTTGGATGATCCTGTGAGAGATATGGAGGAT 3205
Query 3342 ATACTGGTGGATGAATATGGAAGTAATTCAACTCTCCAGCTTCATGGATTCTGCATACCT 3401
|| |||||||||||||||||||||||||||||||||||||| | |||||| ||||| ||
Sbjct 3206 ATGCTGGTGGATGAATATGGAAGTAATTCAACTCTCCAGCTCCCTGGATTTTGCATGCC- 3264
Query 3402 C-CAAT-ACTTAGGGATGA--AG--A----C-GA-----AGG-A---AGTGACTCGGATG 3441
| || | | ||| |||||| || | | || ||| | |||||||||||||
Sbjct 3265 CGCATTGA-TTAAGGATGAGGAGGGAGGGACTGACTCGGAGGGAGGCAGTGACTCGGATG 3323
Query 3442 G-GGGTGATTTTGAGTCTGTCACCCCTGAACACGAGTCAAGAAGCCTTGAAGAACATGTC 3500
| ||| ||||| |||||||||||||||||||| ||||| |||| |||||||||| |||||
Sbjct 3324 GAGGG-GATTTCGAGTCTGTCACCCCTGAACATGAGTCCAGAATCCTTGAAGAAAATGTC 3382
Query 3501 ACACCGTCCATTACCGAAAGGCATACCCGTATACTGGAAGATGTTGATGGTGAGCTTGAA 3560
| | |||| | ||||||||||| | |||| ||||||||||||||||||||||||||
Sbjct 3383 TCGTCATCCACGGCTGAAAGGCATACACTTATATTGGAAGATGTTGATGGTGAGCTTGAA 3442
Query 3561 ATGGAAGACGTGGCTCCACCTTGGGAAGGTGGAAGCAGTGCTAGTGCGATCACAGATCAA 3620
|||||||| |||||||| ||||||||| ||||| | | || | | | ||| ||||||
Sbjct 3443 ATGGAAGATGTGGCTCCGCCTTGGGAAACTGGAAACTGCGC-A---C-A-CACTGATCAA 3496
Query 3621 GCTGATAATAGAGAG-TCTGCAAATTGTCTGCTTG 3654
|||||||||| | || | | | ||||||| |||||
Sbjct 3497 GCTGATAATACAAAGGT-TACCAATTGTCAGCTTG 3530
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 167529436346
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5