BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G63080.1
Length=1132
Score E
Sequences producing significant alignments: (Bits) Value
Ahg324733 jgi|Araly1|324733|fgenesh1_pm.C_scaffold_5002277 821 0.0
Ahg484007 jgi|Araly1|484007|fgenesh2_kg.4__3067__AT2G48150.1 385 5e-106
> Ahg324733 jgi|Araly1|324733|fgenesh1_pm.C_scaffold_5002277
Length=522
Score = 821 bits (444), Expect = 0.0
Identities = 497/523 (95%), Gaps = 2/523 (0%)
Strand=Plus/Plus
Query 425 ATGGGTGCTTC-ATCATCATCATCTGTGTCGGAGAAATCAATCCATCAATTCACCGTCAA 483
||||||||||| || ||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 1 ATGGGTGCTTCTAT-ATCATCATCAGTGTCCGAGAAATCAATCCATCAATTCACCGTCAA 59
Query 484 GGATAGCTCCGGCAAGGAGGTTGACCTAAGCGTGTATCAAGGGAAAGTGCTGCTCGTCGT 543
||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct 60 GGATAGCTCCGGCAAGGAGGTTGACCTAAGCGTATATCAAGGGAAAGTGTTGCTCGTCGT 119
Query 544 CAACGTCGCTTCTAAATGCGGATTCACGGAGTCCAATTACACCCAGCTGACGGAACTTTA 603
||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 120 CAATGTCGCTTCTAAATGCGGATTCACGGAATCCAATTATACCCAGCTGACGGAACTTTA 179
Query 604 CCGGAAATATAAAGATCAAGGTTTTGTGGTATTGGCGTTTCCTTGCAACCAGTTTCTGTC 663
||||||||||||||||||||| |||||| ||||||| ||||||||||||||||||||||
Sbjct 180 CCGGAAATATAAAGATCAAGGGTTTGTGATATTGGCCTTTCCTTGCAACCAGTTTCTGTA 239
Query 664 CCAAGAGCCTGGCACCAGCGAAGAGGCTCATCAATTTGCTTGTACTCGCTTTAAGGCTGA 723
||||||||||||||||||| |||| |||||||||||||| |||||||| |||||||| ||
Sbjct 240 CCAAGAGCCTGGCACCAGCCAAGATGCTCATCAATTTGCCTGTACTCGGTTTAAGGCCGA 299
Query 724 ATACCCTGTTTTCCAAAAGGTGCGTGTAAATGGACAAAACGCTGCACCAGTCTACAAATT 783
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 300 ATACCCCGTTTTCCAAAAGGTGCGTGTCAATGGACAAAACGCTGCACCAGTCTACAAATT 359
Query 784 CCTCAAATCTAAGAAACCCTCTTTTCTTGGAAGTCGTATCAAATGGAACTTCACCAAGTT 843
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 CCTCAAATCTAAGAAACCCTCTTTTCTTGGAAGTCGTATCAAATGGAACTTCACCAAGTT 419
Query 844 CTTGGTCGGCAAAGATGGTCAAGTCATTGATCGTTATGGCACAACTGTTTCACCTCTATC 903
|||||||||||||||||| ||||||||||||||||||||||||||||| | ||||||||
Sbjct 420 CTTGGTCGGCAAAGATGGCCAAGTCATTGATCGTTATGGCACAACTGTGCCTCCTCTATC 479
Query 904 CATCCAGAAAGACATCGAGAAAGCCCTTGCACAAGAATTGTGA 946
||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 480 CATCCAGAAAGACATCGAGAAAGCCCTTGCACAAGTATTATGA 522
> Ahg484007 jgi|Araly1|484007|fgenesh2_kg.4__3067__AT2G48150.1
Length=681
Score = 385 bits (208), Expect = 5e-106
Identities = 398/488 (82%), Gaps = 20/488 (4%)
Strand=Plus/Plus
Query 455 GAGAAATCAATCCATCAATTCACCGTCAAGGATAGCTCCGGCAAGGAGGTTG-ACCTAAG 513
|||| ||| ||||||||||||| || |||||||||||||||||||| || | | ||
Sbjct 48 GAGAGATCCGTCCATCAATTCACTGTAAAGGATAGCTCCGGCAAGGA-CCTGAATTTGAG 106
Query 514 CGTGTATCAAGGGAAAGTGCTGCTCGTCGTCAACGTCGCTTCTAAATGCGGATTCACGGA 573
| | || ||||| ||||| || ||| ||||||| || ||||| |||||||| ||||| ||
Sbjct 107 CATTTACCAAGGAAAAGTCCTCCTCATCGTCAATGTTGCTTCCAAATGCGGTTTCACCGA 166
Query 574 GTCCAATTACACCCAGCTGACGGAACTTTACCGGAAATAT-AAAGATCAAGGTTTTGTGG 632
| || || |||||||| || |||||||||||||||| | || || |||| ||||| |
Sbjct 167 AACAAACTATACCCAGCTCACCGAACTTTACCGGAAAT-TCAAGGACCAAGATTTTGAGA 225
Query 633 TATTGGCGTTTCCTTGCAACCAGTTTCTGTCCCAAGAGCCTGGCACCAG-CGAAGAGGCT 691
| ||||| || ||||||||||||||||| | ||| ||||| ||||| || | |||| |||
Sbjct 226 TCTTGGCATTCCCTTGCAACCAGTTTCTATACCAGGAGCCCGGCACAAGTC-AAGATGCT 284
Query 692 CATCAATTTGCTTGTACTCGCTTTAAGGCTGAATACCCTGTTTTCCAAAAGGTGCGTGTA 751
||| ||||||| || || ||||||||||| ||||||||||||||||||||||| || |||
Sbjct 285 CATGAATTTGCCTGCACACGCTTTAAGGCCGAATACCCTGTTTTCCAAAAGGTACGCGTA 344
Query 752 AATGGACAAAACGCTGCACCAGTCTACAAATTCCTCAAATCTAAG-AAACCCTCTTTTCT 810
|| || |||||||| |||||| |||| |||||||| || | ||| |||||| | ||||
Sbjct 345 AACGGTCAAAACGCAGCACCACTCTATAAATTCCTGAAGGC-AAGTAAACCCACCTTTC- 402
Query 811 TGGAAG-T-C-GTATCAAA-TGGAACTTCACCAAGTTCTTGGTCGGCAAAGATGG-TCAA 865
||| | | | | || ||| ||||||||||||||||||||||||||||||||||| | |
Sbjct 403 TGG--GTTCCAGGAT-AAAGTGGAACTTCACCAAGTTCTTGGTCGGCAAAGATGGCTTA- 458
Query 866 GTCATTGATCGTTATGGCACAACTGTTT-CACCTCTATCCATCCAGAAAGACATCGAGAA 924
|| ||||||||||||||||| | || || |||| ||||| ||| ||||||||||| ||||
Sbjct 459 GTGATTGATCGTTATGGCACGA-TGGTTACACCGCTATCAATCGAGAAAGACATCAAGAA 517
Query 925 AGCCCTTG 932
||| ||||
Sbjct 518 AGCTCTTG 525
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42202069119
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5