BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G63088.1

Length=147
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg939402 jgi|Araly1|939402|scaffold_503593.1                        244    9e-65


> Ahg939402 jgi|Araly1|939402|scaffold_503593.1
Length=255

 Score =  244 bits (132),  Expect = 9e-65
 Identities = 143/148 (97%), Gaps = 2/148 (1%)
 Strand=Plus/Plus

Query  1    ATGGCAGGGACAGTAGTATTGAGATGCTGCACTAGTG-TAACCAAGGTTAGGACATGGAA  59
            |||||||||||||| || ||||||||||||| ||||| ||| ||||||||||||||||||
Sbjct  89   ATGGCAGGGACAGTTGTGTTGAGATGCTGCAGTAGTGTTAA-CAAGGTTAGGACATGGAA  147

Query  60   AAGATGTTCGAAGCAGATAAAGGAGCAAAGGGCTCGTCTTTACATCATCTGGAAATGTGC  119
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  148  AAGATGTTCGAAGCAGATAAAGGAGCAAAGGGCTCGTCTTTACATCATCTGGAAATGTGC  207

Query  120  TGTCTTTCTTCTCTCCTCCCATGATTGA  147
            ||||||||||||||||||||||||||||
Sbjct  208  TGTCTTTCTTCTCTCCTCCCATGATTGA  235



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 4735344364


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5