BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G63090.1
Length=1562
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486812 jgi|Araly1|486812|fgenesh2_kg.5__2804__AT3G63090.1 1770 0.0
> Ahg486812 jgi|Araly1|486812|fgenesh2_kg.5__2804__AT3G63090.1
Length=1212
Score = 1770 bits (958), Expect = 0.0
Identities = 1136/1221 (93%), Gaps = 15/1221 (1%)
Strand=Plus/Plus
Query 190 ATGGTGCTCAGAAACTTAACCATTTCTTACGAAATCATCAAATCTCTGAAACATGCCAAA 249
|||||| |||||||||||||||||||||||||||||||||||| |||| || | |||
Sbjct 1 ATGGTGTTCAGAAACTTAACCATTTCTTACGAAATCATCAAATGTCTG-AA-A----AAA 54
Query 250 GAACATAG--T-TTAGGGATTCAAATCCGATGGATCTCGAGCCTGAAAGTGGTATGGAAG 306
|| | ||| | |||||| |||||||| ||| |||||||||| |||||||||||||||||
Sbjct 55 GAGCCTAGTTTATTAGGGCTTCAAATCAGATCGATCTCGAGCTTGAAAGTGGTATGGAAG 114
Query 307 AAAGACACGAGGCTAGACGAAGCCATCGAGCAGGACAAGCGTTACAAGCTCTGTGCTCGG 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 115 AAAGACACGAGGCTAGACGAAGCCATCGAGCAGGACAAGCGTTACAAGCTCTGTGCTCGG 174
Query 367 GTTGTGAAAGAAGTCCTGAACGAGCCAGGTCAAGTCATTCCTCTCAGATACCTCGAAAAA 426
|| || |||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 175 GTGGTTAAAGAAGTGCTGAACGAGCCAGGTCAAGTCATTCCTCTCAGATACCTCGAGAAA 234
Query 427 CGGCGCGAGAGGCTACGTCTCACTTTCAAAGCTAAGAGCTTTGTTGAAATGAACCCTTCC 486
|| ||||||||| |||||||||||| |||||||||||||||| | || ||||||||||
Sbjct 235 CGCCGCGAGAGGTTACGTCTCACTTCCAAAGCTAAGAGCTTTATCGAGATGAACCCTTGT 294
Query 487 CTGTTCGAGATCTACTACGATCGGATCAAACCCAAGTCCGATCCCGTCCAATTCCTCCGC 546
|||||||||||||||||||||||||||||||||||||| |||| ||| |||||| |||||
Sbjct 295 CTGTTCGAGATCTACTACGATCGGATCAAACCCAAGTCGGATCTCGTTCAATTCATCCGC 354
Query 547 CCCACGCCTCGTCTCAGAGCTTTCCTCGACGAAGAGCAGAGGATTTACTCTGAGAATGAG 606
|| |||||||||||||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct 355 CCAACGCCTCGTCTCAGAGCTTTCCTCGACGAAGAACAGAGGATTTACGCTGAGAATGAG 414
Query 607 -CCTTTACTTGTTTCCAAGCTCTGCCAATTGCTGATGATGGCTAAAGATAAGGTTATCAG 665
|||| | ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 415 CCCTTGA-TTGTTTCCAAGCTCTGCAAATTGCTGATGATGGCTAAAGATAAGGTTATCAG 473
Query 666 TGCAGATAAACTGGTTCATGTGAAGAGAGATTTCGGATTTCCGAACGATTTTCTGATGAA 725
||| ||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 474 TGCGGATAAGCTGGTTCATGTGAAGAGAGATTTCGGATTCCCGAATGATTTTCTGATGAA 533
Query 726 ATTGGTTCAGAAATACCCTAATTACTTCAGGCTAACCGGTTTACCTGAAGAAGGTAAGTC 785
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 534 ATTGGTTCAGAAATACCCTAATTATTTCAGGCTAACTGGTTTACCTGAAGAAGGTAAGTC 593
Query 786 CTTTCTTGAGCTAGTCTCTTGGAACCCTGATTTCGCCAAATCGAAGATTGAGCTGAGAGC 845
|||||||||||| |||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 594 CTTTCTTGAGCTCGTCTCTTGGAACCCTGATTTCGCCAAATCGAAGATTGAACAGAGAGC 653
Query 846 AGAAGACG-AGACCCTTAAAACCGGTGTCCGGATTCGACCCAATTACAATGTGAAATTGC 904
|||||||| || | ||| |||||||||||||| |||||||||||| ||||||||||||||
Sbjct 654 AGAAGACGAAG-CTCTTCAAACCGGTGTCCGGGTTCGACCCAATTTCAATGTGAAATTGC 712
Query 905 CGTCTGGTTTTTTCCTAAGGAAGGAGATGAGAGAGTGGACTAGGGATTGGTTAGAGCAAG 964
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 713 CGTCTGGGTTTTTCCTAAGGAAGGAGATGAGAGAGTGGACTAGGGATTGGTTAGAGCAAG 772
Query 965 ACTACATATCACCATAT-GAGGATGTGTCTCATTTAGACCAAGCTTCTAAGGAAATGGAG 1023
||||||||||||| ||| || |||||||||||||||||||||||||| ||||||||||||
Sbjct 773 ACTACATATCACCCTATGGA-GATGTGTCTCATTTAGACCAAGCTTCCAAGGAAATGGAG 831
Query 1024 AAACGAACTGTTGGTGTTGTGCACGAATTGCTTTCTCTGTCACTGTTGAAAAGAGTCCCT 1083
||||||||||||| ||||||||||||||||| ||||| || || |||||||||||||||
Sbjct 832 AAACGAACTGTTGCCGTTGTGCACGAATTGCTGTCTCTTTCGCTTTTGAAAAGAGTCCCT 891
Query 1084 GTGCCTACACTTGGCAAGTTCTGCGATGAGTTCCGGTTTTCCAACGCGTTCTCGAGTGTT 1143
|||||||||||||||||||||||| |||| ||||||||||| ||||| ||||||||||||
Sbjct 892 GTGCCTACACTTGGCAAGTTCTGCCATGAATTCCGGTTTTCAAACGCCTTCTCGAGTGTT 951
Query 1144 TTCACTCGTCATTCAGGTATATTCTACTTGTCGTTAAAAGGAGGGATCAAGACTGCAGTG 1203
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 952 TTCACTCGTCATTCAGGTATATTCTACTTGTCACTAAAAGGAGGGATCAAGACTGCAGTG 1011
Query 1204 TTGAGAGAAGCTTATAAAGACGATGAGCTTGTTGATAGAGATCCTTTGCTTGCTATTAAG 1263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1012 TTGAGAGAAGCTTATAAAGACGATGAGCTTGTTGATAGAGATCCTTTGCTTGCTATTAAG 1071
Query 1264 GATAAGTTCCTGAGGTTATTAGAGGAAGGATGGCAAGAAAGGAAAGATAGACTGAAGCTG 1323
|||| |||||| || |||||||||||||||||||||||||||||||||||||| || | |
Sbjct 1072 GATAGGTTCCTCAGCTTATTAGAGGAAGGATGGCAAGAAAGGAAAGATAGACTCAAACAG 1131
Query 1324 CAGAGGGAACAAGTTCAGAAAGACAGGGAGATGATGTTAGCAGCGAAAAGCAATGAACCG 1383
||||||||||||||||||||||| |||||| || | |||||| ||||||||||||||||
Sbjct 1132 CAGAGGGAACAAGTTCAGAAAGATAGGGAGTTGCTATTAGCAACGAAAAGCAATGAACCT 1191
Query 1384 ATAGAGCGTCTCTGTGATTAA 1404
| |||||||||||||||||||
Sbjct 1192 AAAGAGCGTCTCTGTGATTAA 1212
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58506616320
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5