BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G63095.1 Length=753 Score E Sequences producing significant alignments: (Bits) Value Ahg486813 jgi|Araly1|486813|fgenesh2_kg.5__2805__AT3G63095.1 880 0.0 > Ahg486813 jgi|Araly1|486813|fgenesh2_kg.5__2805__AT3G63095.1 Length=710 Score = 880 bits (476), Expect = 0.0 Identities = 673/758 (89%), Gaps = 53/758 (7%) Strand=Plus/Minus Query 1 ATGGATACACTTTTTATTGCAG-TAACTCTGGCTCTCGCTCTCTCCTCTTTCACAAGAGG 59 |||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| Sbjct 710 ATGGATACACTTTTTATTGCAGCT-ACTCTGGCTCTCGCTCTCTCCTCTTTCACAAGAGG 652 Query 60 CCAGAGAGTGATACAGATTCCACCACCACGTCCACTATGCGCGTCTCAATACGCCCTAGC 119 |||||||||||||||||||||||| ||||||||||| ||||||||||||||||| || || Sbjct 651 CCAGAGAGTGATACAGATTCCACCGCCACGTCCACTGTGCGCGTCTCAATACGCTCTGGC 592 Query 120 TAACTACGCCTGCTCACGTCTCCCAATGCACACTGTCCCACCACCTGCCCCCATTACCCC 179 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 591 TAACTACGCCTGCTCACGTCTCCCAATGCACACTGTCCCACCACCTGCCCCCATTACCCC 532 Query 180 ACCTCCTGCTCCCATCGCTCCCCCGCCTCCTGAACatgaccaccacgaccacgaccatga 239 ||||||| ||||||||||||||||||||||||| |||| | | | ||||||||||||| Sbjct 531 ACCTCCTCCTCCCATCGCTCCCCCGCCTCCTGACCATG---A-C-C-ACCACGACCATGA 478 Query 240 ccatgaccacgaccacgaccacgacgatgaccacgatgatgatgatgaccatgaccacga 299 |||| ||||| || | | || ||||||||| |||| |||||||| || | || Sbjct 477 CCAT------GACCATGA-C-C-AC---GACCACGATCATGACGATGACCACGATGATGA 430 Query 300 tgatgaccacgatcacgaccatgacgatgatcacgaccatgacgacgatgaccgtgaccg 359 |||||||||||| ||||| ||||| | |||||||||||| |||||||||| | Sbjct 429 TGATGACCACGACCACGATGATGACCACGATCACGACCAT---GACGATGACC---A--- 379 Query 360 tgaccgtgaccgtgaccgcgaccgtgaccgtgaccgcgatcatgaccgtgctcacgatga 419 ||| ||| ||| ||| |||||| |||| |||||||| ||||||||| Sbjct 378 TGA---TGA---TGA---CGA----GACCGT------GATCGTGACCGTGATCACGATGA 338 Query 420 ccatgaccATAACCATGACCATGACAATGATCACAATGACAACAATCACGACCATAATCA 479 |||| |||||||||| |||| ||||||||||||||||||| | |||||||||||| |||| Sbjct 337 CCATAACCATAACCACGACCGTGACAATGATCACAATGACCATAATCACGACCATGATCA 278 Query 480 TGAC-GCCGACCACCACAACAATGACGACAACAG-C-C-ACGATCAACACCGCCGTCGAc 535 |||| | |||||||||||| |||||||||||||| | | ||||||| ||||||||||||| Sbjct 277 TGACAG-CGACCACCACAATAATGACGACAACAGCCACGACGATCACCACCGCCGTCGAC 219 Query 536 accaccgccaccaccaccgccaccaTCATCGACACAGAGAAGAGACGTTTGCGCAACAAG 595 ||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| Sbjct 218 ACCACCGCCACCACCACCGACACCATCATCGACACAGTGAAGAGACGTTTGCGCAACAAG 159 Query 596 AGTGCTGCAAGTGGTTGAAGCAAATGGACAACGAGTGCGTGTGCGACCTTCTGGTCCGGC 655 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 158 ATTGCTGCAAGTGGTTGAAGCAAATGGACAACGAGTGCGTGTGCGACCTTCTGGTCCGGC 99 Query 656 TTCCGCCATTGCTAGCCAAACCAATTCATAACTATACAGTCTTTGTGGATGAGTCATGTA 715 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 98 TTCCGCCATTGCTAGCCAAACCAATTCATAACTATACAGTCTTTGTGGATGAGTCATGCA 39 Query 716 TCGTCACTTTCGTCTGTGGAGGCAGACTCATTAGCTGA 753 |||||||||||||||||||||||||||||||||||||| Sbjct 38 TCGTCACTTTCGTCTGTGGAGGCAGACTCATTAGCTGA 1 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 27753483576 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5