BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G63095.1
Length=753
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486813 jgi|Araly1|486813|fgenesh2_kg.5__2805__AT3G63095.1 880 0.0
> Ahg486813 jgi|Araly1|486813|fgenesh2_kg.5__2805__AT3G63095.1
Length=710
Score = 880 bits (476), Expect = 0.0
Identities = 673/758 (89%), Gaps = 53/758 (7%)
Strand=Plus/Minus
Query 1 ATGGATACACTTTTTATTGCAG-TAACTCTGGCTCTCGCTCTCTCCTCTTTCACAAGAGG 59
|||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 710 ATGGATACACTTTTTATTGCAGCT-ACTCTGGCTCTCGCTCTCTCCTCTTTCACAAGAGG 652
Query 60 CCAGAGAGTGATACAGATTCCACCACCACGTCCACTATGCGCGTCTCAATACGCCCTAGC 119
|||||||||||||||||||||||| ||||||||||| ||||||||||||||||| || ||
Sbjct 651 CCAGAGAGTGATACAGATTCCACCGCCACGTCCACTGTGCGCGTCTCAATACGCTCTGGC 592
Query 120 TAACTACGCCTGCTCACGTCTCCCAATGCACACTGTCCCACCACCTGCCCCCATTACCCC 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 591 TAACTACGCCTGCTCACGTCTCCCAATGCACACTGTCCCACCACCTGCCCCCATTACCCC 532
Query 180 ACCTCCTGCTCCCATCGCTCCCCCGCCTCCTGAACatgaccaccacgaccacgaccatga 239
||||||| ||||||||||||||||||||||||| |||| | | | |||||||||||||
Sbjct 531 ACCTCCTCCTCCCATCGCTCCCCCGCCTCCTGACCATG---A-C-C-ACCACGACCATGA 478
Query 240 ccatgaccacgaccacgaccacgacgatgaccacgatgatgatgatgaccatgaccacga 299
|||| ||||| || | | || ||||||||| |||| |||||||| || | ||
Sbjct 477 CCAT------GACCATGA-C-C-AC---GACCACGATCATGACGATGACCACGATGATGA 430
Query 300 tgatgaccacgatcacgaccatgacgatgatcacgaccatgacgacgatgaccgtgaccg 359
|||||||||||| ||||| ||||| | |||||||||||| |||||||||| |
Sbjct 429 TGATGACCACGACCACGATGATGACCACGATCACGACCAT---GACGATGACC---A--- 379
Query 360 tgaccgtgaccgtgaccgcgaccgtgaccgtgaccgcgatcatgaccgtgctcacgatga 419
||| ||| ||| ||| |||||| |||| |||||||| |||||||||
Sbjct 378 TGA---TGA---TGA---CGA----GACCGT------GATCGTGACCGTGATCACGATGA 338
Query 420 ccatgaccATAACCATGACCATGACAATGATCACAATGACAACAATCACGACCATAATCA 479
|||| |||||||||| |||| ||||||||||||||||||| | |||||||||||| ||||
Sbjct 337 CCATAACCATAACCACGACCGTGACAATGATCACAATGACCATAATCACGACCATGATCA 278
Query 480 TGAC-GCCGACCACCACAACAATGACGACAACAG-C-C-ACGATCAACACCGCCGTCGAc 535
|||| | |||||||||||| |||||||||||||| | | ||||||| |||||||||||||
Sbjct 277 TGACAG-CGACCACCACAATAATGACGACAACAGCCACGACGATCACCACCGCCGTCGAC 219
Query 536 accaccgccaccaccaccgccaccaTCATCGACACAGAGAAGAGACGTTTGCGCAACAAG 595
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 218 ACCACCGCCACCACCACCGACACCATCATCGACACAGTGAAGAGACGTTTGCGCAACAAG 159
Query 596 AGTGCTGCAAGTGGTTGAAGCAAATGGACAACGAGTGCGTGTGCGACCTTCTGGTCCGGC 655
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 158 ATTGCTGCAAGTGGTTGAAGCAAATGGACAACGAGTGCGTGTGCGACCTTCTGGTCCGGC 99
Query 656 TTCCGCCATTGCTAGCCAAACCAATTCATAACTATACAGTCTTTGTGGATGAGTCATGTA 715
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 98 TTCCGCCATTGCTAGCCAAACCAATTCATAACTATACAGTCTTTGTGGATGAGTCATGCA 39
Query 716 TCGTCACTTTCGTCTGTGGAGGCAGACTCATTAGCTGA 753
||||||||||||||||||||||||||||||||||||||
Sbjct 38 TCGTCACTTTCGTCTGTGGAGGCAGACTCATTAGCTGA 1
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27753483576
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5