BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G63110.1
Length=1465
Score E
Sequences producing significant alignments: (Bits) Value
Ahg939405 jgi|Araly1|939405|scaffold_503596.1 1600 0.0
> Ahg939405 jgi|Araly1|939405|scaffold_503596.1
Length=1051
Score = 1600 bits (866), Expect = 0.0
Identities = 986/1046 (94%), Gaps = 0/1046 (0%)
Strand=Plus/Plus
Query 74 ATATTGCAAAGCGTTTCATCATGATCATGAAGATATCTATGGCTATGTGCAAACAACCAT 133
||| ||||||||| |||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct 1 ATACTGCAAAGCGCTTCATCATGATCATGAAGGTATCTATGGCTATGTGCAAACTACCAT 60
Query 134 TGCCTCCTTCGCCGACTTTAGACTTCCCTCCAGCGAGATTTGGTCCCAATATGCTAACTC 193
|||||||||||||| | |||||||||||||| |||||||||||||||||||||||| |||
Sbjct 61 TGCCTCCTTCGCCGGCGTTAGACTTCCCTCCTGCGAGATTTGGTCCCAATATGCTATCTC 120
Query 194 TAAACCCATACGGTCCAAAGGACAAAGTTGTGGTCATCATGGGTGCTACCGGGACAGGCA 253
||||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 121 TAAACCCATTTGGTCCAAAGGACAAAGTTGTGGTCATAATGGGTGCTACCGGAACAGGCA 180
Query 254 AGTCACGACTCTCCGTGGATATAGCCACACGTTTTCGGGCTGAGATCATAAACTCAGACA 313
||||| |||||||||| ||||||||||||||||||||||||||||| ||||| || ||||
Sbjct 181 AGTCAAGACTCTCCGTCGATATAGCCACACGTTTTCGGGCTGAGATAATAAATTCCGACA 240
Query 314 AGATACAAGTCCACCAAGGTCTAGACATTGTAACCAACAAGATCACGAGCGAGGAGAGCT 373
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 241 AGATCCAAGTCCACCAAGGTCTAGACATTGTCACCAACAAGATCACGAGCGAGGAGAGCT 300
Query 374 GCGGGGTACCGCACCATCTCCTCGGCGTCTTGCCGCCTGAAGCCGACTTAACCGCCGCGA 433
||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct 301 GCGGGGTACCGCATCATCTCCTCGGCGTCTTGCCGCCTGAAGCGGACTTAACCGCCCCGA 360
Query 434 ATTACTGTCACATGGCGAATCTCTCCATTGAATCCGTCCTAAACCGTGGAAAGCTTCCAA 493
||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||
Sbjct 361 ATTACTGTCACATGGCGAATCTCTCCATTGAATCCATCCTAAACCGGGGAAAGCTTCCAA 420
Query 494 TCATCGTTGGAGGTTCCAACTCTTACGTGGAGGCTCTAGTGGATGACAAAGAAAACAAGT 553
|||||||||||||||| |||||||||||||||||||||||||||||| |||| ||||| |
Sbjct 421 TCATCGTTGGAGGTTCTAACTCTTACGTGGAGGCTCTAGTGGATGACGAAGACAACAAAT 480
Query 554 TCAGGTCGAGATACGACTGTTGTTTTCTATGGGTGGACGTGGCACTTCCCGTTTTGCACG 613
||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 481 TCAGGTCCAGATACGACTGTTGTTTTCTATGGGTCGACGTGGCACTTCCCGTTTTGCATG 540
Query 614 GGTTCGTGTCTGAGAGAGTTGACAAGATGGTGGAGAGTGGAATGGTTGAGGAAGTCAGAG 673
|||||||||||||||| |||||||||||||| || | |||||||||||||||||| ||||
Sbjct 541 GGTTCGTGTCTGAGAGGGTTGACAAGATGGTAGAAAATGGAATGGTTGAGGAAGTTAGAG 600
Query 674 AATTTTTCGACTTTTCGAACTCTGATTACTCAAGAGGGATCAAGAAAGCAATCGGATTTC 733
| ||||| ||||||||| | |||||||||||||||||||||||||||||||||||| |||
Sbjct 601 ATTTTTTTGACTTTTCGGATTCTGATTACTCAAGAGGGATCAAGAAAGCAATCGGAGTTC 660
Query 734 CGGAGTTTGACAGGTTTTTCAGGAACGAGCAGTTCTTGAATGTGGAAGACAGAGAAGAAC 793
| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 661 CAGAGTTTGACAGGTTTTTCAGGAACGAGCAGTTCTTGAATGTGGAAGACAGGGAAGAAC 720
Query 794 TGTTAAGTAAAGTGTTGGAAGAAATAAAGAGGAATACATTTGAGTTAGCTTGTAGGCAGA 853
|||||| ||||||| | ||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 721 TGTTAATTAAAGTGGTCGAAGACATAAAGAGGAACACATTTGAGTTAGCTTGTAGGCAGA 780
Query 854 GAGAAAAGATCGAACGGTTGAGAAAAGTGAAGAAGTGGTCTATTCAGAGAGTGGATGCGA 913
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 781 GAGAAAAGATCGAACGGTTGAGAAAAGTGAAGAAGTGGTCCATTCAGAGAGTGGATGCGA 840
Query 914 CTCCAGTCTTTACAAAGCGAAGGTCCAAGATGGATGCTAACGTGGCCTGGGAGAGGCTCG 973
|||| |||||||||||||| |||||||||| ||||||| ||||||||||||||| |||||
Sbjct 841 CTCCGGTCTTTACAAAGCGCAGGTCCAAGACGGATGCTGACGTGGCCTGGGAGAAGCTCG 900
Query 974 TGGCTGGACCAAGCACAGATACTGTGTCGCGGTTTCTGCTGGACATTGCCAGCCGACGAC 1033
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| || |
Sbjct 901 TGGCTGGACCAAGCACCGATACTGTGTCGCGGTTTCTGCTGGACATTGCCAGCCGTCGGC 960
Query 1034 CGCTCGTGGAAGCTTCAACAGCGGTTGCGGCCGCCATGGAACGCGAGTTGTCGCGGTGTC 1093
||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||
Sbjct 961 CGCTCGTGGAAGCTTCAACCGCCGTTGCGGCGGCCATGGAACGCGAGTTGTCGCGGTGTC 1020
Query 1094 TAGTGGCGTGATCAGTTGTAACCACG 1119
||||||||||||||||||||||||||
Sbjct 1021 TAGTGGCGTGATCAGTTGTAACCACG 1046
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54811862555
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5