BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G63120.1
Length=1009
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486815 jgi|Araly1|486815|fgenesh2_kg.5__2807__AT3G63120.1 1256 0.0
> Ahg486815 jgi|Araly1|486815|fgenesh2_kg.5__2807__AT3G63120.1
Length=962
Score = 1256 bits (680), Expect = 0.0
Identities = 833/905 (92%), Gaps = 18/905 (2%)
Strand=Plus/Plus
Query 1 CACAATTCTTCGCGGCTTCTTTTAGCTTCTAAGCTTCAGAGCAGCaaaaaaaaaaCAATG 60
|||| ||||||||||||||||||||||| | |||||| || ||| || |||||||
Sbjct 1 CACATTTCTTCGCGGCTTCTTTTAGCTTTTTAGCTTC--AG-AGC-----AACAACAATG 52
Query 61 GAGAAGCGCCGGAGATAGATCTGCTTTCTTCCATTCTCCGGACCTTCTCTAGTTCACGAA 120
||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |||
Sbjct 53 GAGAAGCGCCGGAGATAGATCTGCTTTCTTCCAATCTCTGGACCTTCTCTAGTTCAAGAA 112
Query 121 CCAACTTCTTCCACTTTATTCTCATTCGTTGGAGAAATGGACTCTCTCGCAACCGATCCA 180
|||||||| ||||||| |||||||||| ||| ||| |||| |||||||||||||||||||
Sbjct 113 CCAACTTCCTCCACTTAATTCTCATTCATTGCAGAGATGGGCTCTCTCGCAACCGATCCA 172
Query 181 GCTTTCATTGATTCGGATGTATACCTCAGGTTAGGACTTATTATTGAGGGCAAACGATTG 240
| ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 173 GGTTTCATTGATTCGGATGTATACCTCAGATTAGGACTTATCATTGAGGGCAAACGATTG 232
Query 241 AAAAAGCCACCGACTGTTCTCTCACGCCTCTCTTCTTCTCTGGAGAGATCTCTGTTACTC 300
|||||||||| ||||||||||| ||||||||||| |||||||||||||||||||| |||
Sbjct 233 CAAAAGCCACCCACTGTTCTCTCCCGCCTCTCTTCATCTCTGGAGAGATCTCTGTTGCTC 292
Query 301 AATCATGATGACAAGATTCTG-CTTGGATCGCCAGACTCTGTTACCGTGTTTGACGGGAG 359
|||| ||||||| |||||| | || ||||||||||||||||||||| ||||| |||||
Sbjct 293 AATC---ATGACAATATTCTGAC-TGAATCGCCAGACTCTGTTACCGTCTTTGATGGGAG 348
Query 360 ATCTCCCCCTGAGATCAGTATTGCACACTACTTGGATCGCATTTTCAAGTACTCTTGCTG 419
|||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct 349 ATCTCCCCCTGAGATCAGCATTTCACACTACTTGGATCGCATTTTCAAGTACTCTTGCTG 408
Query 420 CAGTCCCTCCTGCTTCGTCATTGCGCATATCTACATTGATCACTTTCTCCATAAGACCCG 479
||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 409 CAGCCCCTCCTGCTTCGTCATTGCACATATCTACATTGATCACTTTCTCCACAAGACCCG 468
Query 480 AGCCCTTCTCAAACCCCTTAATGTCCACCGCCTTATCATTACAACTGTCATGTTAGCTGC 539
||||| ||||||||| ||||||||||||||||||||||| |||| |||||||||||| ||
Sbjct 469 AGCCCATCTCAAACCGCTTAATGTCCACCGCCTTATCATAACAAGTGTCATGTTAGCCGC 528
Query 540 TAAAGTCTTCGATGATAGGTATTTCAACAATGCATACTACGCAAGAGTGGGAGGTGTGA- 598
||||||||||||||||||||||||||||||||||||||| || ||||| |||||||| |
Sbjct 529 TAAAGTCTTCGATGATAGGTATTTCAACAATGCATACTATGCGAGAGTTGGAGGTGTCAG 588
Query 599 CTACGAGAGAGTTAAACAGATTGGAGATGGAGTTGTTGTTTACCCTTGACTTCAAGCTTC 658
| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 589 C-ACGAGAGAGTTAAACAGATTGGAGATGGAGTTGTTGTTCACCCTTGACTTCAAGCTTC 647
Query 659 AGGTAGATCCTCAGACGTTTCACACACACTGTTGTCAGTTAGAAAAGCAGAACAGAGACG 718
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||
Sbjct 648 AGGTAGATCCTCAGACGTTTCACACACATTGTTGTCAGTTAGAAAAACAGAACAGCGACA 707
Query 719 GCTTCCAGATCGAGTGGCCCATAAAAGAAGCATGCCGAGCCAACAAAGAGACTTGGCAGA 778
||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 708 GCTTCCAGATCGAGTGGCCGATAAAAGAAGCATGTCGAGCCAACAAAGAGACTTGGCAGA 767
Query 779 AGAGGACACCCGACTCACTCTGCTCTCAAACCACAGCACGCTGATCGGCAAGGGTAAGAT 838
|||||||||||||||| ||||||||||||| |||||||||||||| |||||||||||||
Sbjct 768 AGAGGACACCCGACTCTGTCTGCTCTCAAACGACAGCACGCTGATCAGCAAGGGTAAGAT 827
Query 839 AGGATTATTTTGTGTTTTAGTAGTGATGATTCTTTTGCATGATTGATTGTTTGTGACAAT 898
|||||| || ||||||| |||||||||||||||||||| |||| ||||||||||||||
Sbjct 828 AGGATT-TT--GTGTTTTGGTAGTGATGATTCTTTTGCAAGATTAATTGTTTGTGACAAC 884
Query 899 TGTGT 903
|||||
Sbjct 885 TGTGT 889
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37512950328
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5